Wall clock time and date at job start Sat Apr 11 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21271 * 120.00188 * 2 1 4 4 N 1.34784 * 120.00090 * 180.02562 * 2 1 3 5 5 C 1.46497 * 120.00101 * 180.02562 * 4 2 1 6 6 C 1.53004 * 109.46657 * 304.12177 * 5 4 2 7 7 C 1.50698 * 109.46790 * 184.12557 * 5 4 2 8 8 O 1.21286 * 119.99795 * 225.15181 * 7 5 4 9 9 N 1.34769 * 120.00297 * 45.15977 * 7 5 4 10 10 C 1.46928 * 120.63365 * 5.63124 * 9 7 5 11 11 C 1.53193 * 108.77914 * 233.58938 * 10 9 7 12 12 C 1.53037 * 109.31142 * 305.36285 * 11 10 9 13 13 C 1.53042 * 109.53904 * 61.36575 * 12 11 10 14 14 H 1.09003 * 109.49594 * 58.61499 * 13 12 11 15 15 C 1.52999 * 109.50006 * 178.68398 * 13 12 11 16 16 N 1.46503 * 109.46886 * 294.99948 * 15 13 12 17 17 C 1.36941 * 120.00083 * 180.02562 * 16 15 13 18 18 H 1.08001 * 119.99752 * 359.97438 * 17 16 15 19 19 C 1.38809 * 120.00125 * 179.97438 * 17 16 15 20 20 N 1.31617 * 119.99834 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00004 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47286 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47158 * 120.00153 * 21 19 17 24 24 H 1.48507 * 109.47121 * 239.99812 * 21 19 17 25 25 C 1.46931 * 120.63290 * 185.35470 * 9 7 5 26 26 C 1.52995 * 109.47230 * 64.12360 * 5 4 2 27 27 C 1.52994 * 109.47428 * 64.67390 * 26 5 4 28 28 C 1.53003 * 109.47174 * 184.67642 * 26 5 4 29 29 H 1.08999 * 109.46831 * 269.99451 * 1 2 3 30 30 H 1.09000 * 109.47151 * 150.00099 * 1 2 3 31 31 H 1.08997 * 109.47077 * 30.00049 * 1 2 3 32 32 H 0.97001 * 119.99405 * 359.97438 * 4 2 1 33 33 H 1.09000 * 109.47237 * 67.24457 * 6 5 4 34 34 H 1.09000 * 109.46704 * 187.23996 * 6 5 4 35 35 H 1.08996 * 109.47445 * 307.23563 * 6 5 4 36 36 H 1.09000 * 109.58334 * 353.37739 * 10 9 7 37 37 H 1.09005 * 109.58771 * 113.79887 * 10 9 7 38 38 H 1.08997 * 109.49387 * 65.31542 * 11 10 9 39 39 H 1.09000 * 109.49531 * 185.38091 * 11 10 9 40 40 H 1.09002 * 109.45733 * 181.38304 * 12 11 10 41 41 H 1.09000 * 109.46253 * 301.36083 * 12 11 10 42 42 H 1.09001 * 109.47280 * 54.99712 * 15 13 12 43 43 H 1.08995 * 109.47324 * 175.00253 * 15 13 12 44 44 H 0.96999 * 119.99963 * 359.97438 * 16 15 13 45 45 H 0.97000 * 120.00135 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.58720 * 246.20181 * 25 9 7 47 47 H 1.08999 * 109.58447 * 6.62599 * 25 9 7 48 48 H 1.09001 * 109.47397 * 304.67180 * 26 5 4 49 49 H 1.09006 * 109.47264 * 67.01544 * 27 26 5 50 50 H 1.08996 * 109.47760 * 187.01889 * 27 26 5 51 51 H 1.08998 * 109.46958 * 307.01913 * 27 26 5 52 52 H 1.08994 * 109.47443 * 180.02562 * 28 26 5 53 53 H 1.09001 * 109.46581 * 300.00038 * 28 26 5 54 54 H 1.09004 * 109.47022 * 59.99614 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 7 2.1810 -1.1673 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1563 -0.3572 -1.1934 7 6 4.1482 -2.5843 -0.1029 8 8 5.0484 -2.9624 0.6166 9 7 3.5973 -3.4315 -0.9946 10 6 2.5929 -2.9570 -1.9563 11 6 1.3473 -3.8418 -1.8454 12 6 1.7494 -5.3071 -2.0281 13 6 2.7284 -5.7107 -0.9232 14 1 2.2608 -5.5607 0.0499 15 6 3.1044 -7.1847 -1.0874 16 7 1.9178 -8.0177 -0.8766 17 6 2.0120 -9.3804 -0.9729 18 1 2.9609 -9.8411 -1.2046 19 6 0.8878 -10.1697 -0.7727 20 7 -0.2685 -9.6083 -0.4898 21 14 1.0162 -12.0286 -0.9047 22 1 2.4149 -12.4063 -1.2307 23 1 0.6250 -12.6449 0.3885 24 1 0.1104 -12.5123 -1.9776 25 6 3.9939 -4.8459 -1.0274 26 6 4.1554 -0.5386 1.2985 27 6 3.7433 -1.4128 2.4845 28 6 5.6810 -0.4321 1.2492 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3633 -0.8900 -0.5138 31 1 -0.3633 0.8900 -0.5138 32 1 1.6959 -2.0073 -0.0005 33 1 3.9026 0.6937 -1.0545 34 1 5.2386 -0.4629 -1.2680 35 1 3.6915 -0.7255 -2.1080 36 1 2.3289 -1.9242 -1.7292 37 1 2.9966 -3.0194 -2.9670 38 1 0.8929 -3.7088 -0.8636 39 1 0.6318 -3.5613 -2.6185 40 1 0.8612 -5.9367 -1.9740 41 1 2.2263 -5.4344 -2.9999 42 1 3.4913 -7.3512 -2.0928 43 1 3.8681 -7.4485 -0.3559 44 1 1.0656 -7.6039 -0.6681 45 1 -1.0540 -10.1598 -0.3495 46 1 4.5095 -5.0591 -1.9638 47 1 4.6545 -5.0597 -0.1872 48 1 3.7254 0.4563 1.4137 49 1 4.2717 -2.3649 2.4351 50 1 3.9958 -0.9051 3.4153 51 1 2.6687 -1.5914 2.4480 52 1 6.0440 0.0154 2.1744 53 1 6.1110 -1.4270 1.1340 54 1 5.9746 0.1908 0.4043 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713245551.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:25 Heat of formation + Delta-G solvation = -75.119813 kcal Electronic energy + Delta-G solvation = -32360.976399 eV Core-core repulsion = 28332.475363 eV Total energy + Delta-G solvation = -4028.501036 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.54906 -40.38198 -39.22687 -37.14438 -36.76464 -34.88846 -33.97629 -33.01758 -31.99563 -31.35303 -29.89061 -27.96091 -27.26750 -26.85317 -25.13037 -24.46131 -23.10872 -22.69976 -21.30613 -20.90822 -19.76982 -19.20530 -18.78525 -17.83034 -17.09305 -16.72282 -16.40302 -16.19464 -16.13636 -15.74611 -15.60623 -15.33334 -15.24764 -15.06968 -14.78637 -14.71104 -14.26798 -14.18941 -13.83802 -13.65602 -13.51214 -13.46087 -13.25399 -13.15653 -13.03565 -12.93933 -12.81395 -12.69313 -12.59058 -12.28408 -12.12145 -12.08539 -11.96450 -11.86966 -11.83625 -11.67950 -11.51538 -11.35680 -11.03939 -10.93032 -10.34180 -9.99021 -9.68417 -8.98649 -7.95574 -5.23426 1.28439 1.47486 1.48033 1.57894 1.63689 1.81990 2.22558 2.56061 3.19178 3.38337 3.61458 3.75725 3.78183 3.82065 3.92716 3.93998 4.01007 4.17617 4.27957 4.36509 4.41332 4.41877 4.50213 4.54206 4.56815 4.63897 4.70163 4.72128 4.76057 4.78347 4.80671 4.85569 4.87842 4.92579 4.97680 5.00249 5.11760 5.13882 5.17698 5.19705 5.24307 5.26562 5.36997 5.41682 5.44409 5.49511 5.51962 5.60159 6.27108 6.30490 6.45093 7.02037 7.20369 7.34294 8.09538 8.33763 9.27959 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017512 B = 0.002750 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.501646 B =10180.736445 C =10788.104655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.513 3.487 3 O -0.570 6.570 4 N -0.718 5.718 5 C 0.172 3.828 6 C -0.161 4.161 7 C 0.516 3.484 8 O -0.548 6.548 9 N -0.599 5.599 10 C 0.079 3.921 11 C -0.128 4.128 12 C -0.107 4.107 13 C -0.091 4.091 14 H 0.058 0.942 15 C 0.158 3.842 16 N -0.740 5.740 17 C -0.245 4.245 18 H 0.072 0.928 19 C -0.072 4.072 20 N -0.966 5.966 21 Si 0.970 3.030 22 H -0.268 1.268 23 H -0.294 1.294 24 H -0.291 1.291 25 C 0.127 3.873 26 C -0.083 4.083 27 C -0.151 4.151 28 C -0.156 4.156 29 H 0.105 0.895 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.411 0.589 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.012 0.988 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.083 0.917 49 H 0.056 0.944 50 H 0.058 0.942 51 H 0.050 0.950 52 H 0.056 0.944 53 H 0.070 0.930 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 23.287 -2.754 23.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.303 3.697 3 O -0.449 6.449 4 N -0.375 5.375 5 C 0.082 3.918 6 C -0.218 4.218 7 C 0.304 3.696 8 O -0.425 6.425 9 N -0.331 5.331 10 C -0.043 4.043 11 C -0.166 4.166 12 C -0.145 4.145 13 C -0.111 4.111 14 H 0.077 0.923 15 C 0.031 3.969 16 N -0.383 5.383 17 C -0.377 4.377 18 H 0.090 0.910 19 C -0.265 4.265 20 N -0.617 5.617 21 Si 0.800 3.200 22 H -0.193 1.193 23 H -0.222 1.222 24 H -0.219 1.219 25 C 0.004 3.996 26 C -0.103 4.103 27 C -0.208 4.208 28 C -0.214 4.214 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.250 0.750 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.086 0.914 39 H 0.121 0.879 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.030 0.970 44 H 0.208 0.792 45 H 0.060 0.940 46 H 0.099 0.901 47 H 0.094 0.906 48 H 0.101 0.899 49 H 0.075 0.925 50 H 0.077 0.923 51 H 0.069 0.931 52 H 0.075 0.925 53 H 0.089 0.911 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.571 23.665 -2.418 24.224 hybrid contribution -0.525 -1.786 0.309 1.887 sum 4.046 21.879 -2.110 22.350 Atomic orbital electron populations 1.21979 0.88390 1.06558 1.06146 1.21454 0.91885 0.82453 0.73911 1.90664 1.71352 1.32434 1.50414 1.46601 1.05452 1.10104 1.75357 1.20478 0.81281 0.91549 0.98459 1.22326 1.01936 1.01999 0.95570 1.20750 0.82550 0.87105 0.79234 1.90617 1.30638 1.77190 1.44094 1.48213 1.41589 1.08987 1.34344 1.22614 0.88061 1.00466 0.93121 1.21950 0.97351 0.93702 1.03581 1.21451 0.98578 0.96627 0.97836 1.21545 0.96403 0.93462 0.99651 0.92341 1.20720 0.89247 0.89544 0.97425 1.42504 1.07824 1.02720 1.85289 1.19646 0.94884 0.84338 1.38800 0.90956 1.25500 0.95463 1.02212 1.03317 1.69799 0.99865 1.35358 1.56699 0.85121 0.77586 0.80611 0.76730 1.19290 1.22152 1.21854 1.21546 0.95801 0.79168 1.03094 1.21223 0.97177 0.99432 0.92468 1.21941 1.00746 1.00441 0.97714 1.22099 0.94231 1.03239 1.01794 0.87681 0.87731 0.88078 0.74986 0.89555 0.91074 0.90451 0.86367 0.89696 0.91354 0.87900 0.93181 0.91499 0.95647 0.96995 0.79151 0.93987 0.90066 0.90619 0.89851 0.92502 0.92315 0.93121 0.92479 0.91130 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.30 71.24 0.73 -0.65 16 2 C 0.51 7.99 7.34 87.66 0.64 8.63 16 3 O -0.57 -12.90 13.40 -3.00 -0.04 -12.94 16 4 N -0.72 -10.90 2.37 -426.33 -1.01 -11.91 16 5 C 0.17 3.32 0.12 2.86 0.00 3.32 16 6 C -0.16 -2.81 7.19 71.98 0.52 -2.29 16 7 C 0.52 12.06 5.87 87.66 0.51 12.58 16 8 O -0.55 -16.32 11.04 -3.05 -0.03 -16.36 16 9 N -0.60 -12.46 2.91 -818.04 -2.38 -14.84 16 10 C 0.08 1.16 4.56 86.36 0.39 1.55 16 11 C -0.13 -2.05 5.90 30.67 0.18 -1.87 16 12 C -0.11 -2.71 5.05 30.62 0.15 -2.55 16 13 C -0.09 -2.67 2.39 -10.57 -0.03 -2.69 16 14 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 15 C 0.16 6.07 5.65 86.38 0.49 6.56 16 16 N -0.74 -36.59 5.32 -343.45 -1.83 -38.41 16 17 C -0.24 -13.53 9.99 84.03 0.84 -12.69 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.86 16 19 C -0.07 -4.11 5.50 84.86 0.47 -3.64 16 20 N -0.97 -57.86 13.06 21.65 0.28 -57.57 16 21 Si 0.97 45.67 29.55 68.60 2.03 47.70 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 25 C 0.13 3.19 5.73 86.51 0.50 3.69 16 26 C -0.08 -1.81 2.17 -10.80 -0.02 -1.83 16 27 C -0.15 -3.45 8.67 71.98 0.62 -2.83 16 28 C -0.16 -3.39 8.48 71.98 0.61 -2.78 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.41 5.45 5.88 -92.71 -0.55 4.90 16 33 H 0.09 1.71 6.15 -2.39 -0.01 1.70 16 34 H 0.07 1.25 6.78 -2.39 -0.02 1.24 16 35 H 0.08 1.11 6.14 -2.39 -0.01 1.10 16 36 H 0.12 1.42 3.39 -2.39 -0.01 1.41 16 37 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.07 1.06 7.21 -2.39 -0.02 1.04 16 39 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.05 1.60 7.15 -2.39 -0.02 1.58 16 41 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.38 19.51 6.85 -92.71 -0.63 18.88 16 45 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 46 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 47 H 0.08 2.20 7.04 -2.39 -0.02 2.18 16 48 H 0.08 1.96 6.38 -2.39 -0.02 1.94 16 49 H 0.06 1.55 5.90 -2.38 -0.01 1.54 16 50 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 51 H 0.05 1.08 7.56 -2.39 -0.02 1.06 16 52 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.07 1.82 5.43 -2.39 -0.01 1.81 16 54 H 0.06 1.16 6.52 -2.39 -0.02 1.15 16 Total: -1.00 -70.22 396.12 3.37 -66.85 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -0.27 Total: 34.99 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 6.62 Total: 2.50 kcal Atomic # 7 Polarization: -117.80 SS G_CDS: -4.93 Total: -122.74 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.07 Total: -29.30 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -70.22 3.37 -66.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713245551.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.269 kcal (2) G-P(sol) polarization free energy of solvation -70.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds