Wall clock time and date at job start Sat Apr 11 2020 05:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47108 * 2 1 4 4 C 1.53001 * 109.46754 * 60.00315 * 3 2 1 5 5 C 1.52993 * 109.47292 * 300.00382 * 3 2 1 6 6 C 1.50702 * 109.46983 * 180.02562 * 3 2 1 7 7 O 1.21277 * 120.00346 * 0.02562 * 6 3 2 8 8 N 1.34782 * 119.99431 * 180.02562 * 6 3 2 9 9 C 1.46499 * 119.99484 * 179.97438 * 8 6 3 10 10 C 1.53004 * 109.47079 * 184.87380 * 9 8 6 11 11 H 1.08989 * 109.45820 * 173.96294 * 10 9 8 12 12 C 1.53046 * 109.45858 * 293.93727 * 10 9 8 13 13 C 1.53122 * 109.27279 * 179.19299 * 12 10 9 14 14 C 1.53110 * 109.16593 * 302.34262 * 13 12 10 15 15 C 1.53040 * 109.27640 * 57.65245 * 14 13 12 16 16 N 1.46839 * 109.52756 * 300.82431 * 15 14 13 17 17 C 1.46898 * 111.00119 * 185.83758 * 16 15 14 18 18 C 1.50698 * 109.47088 * 73.42170 * 17 16 15 19 19 O 1.21285 * 120.00135 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99989 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99633 * 179.97438 * 20 18 17 22 22 H 1.07997 * 120.00481 * 359.97438 * 21 20 18 23 23 C 1.38958 * 119.99355 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00215 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99665 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46843 * 89.99899 * 25 23 21 27 27 H 1.48497 * 109.47412 * 210.00109 * 25 23 21 28 28 H 1.48504 * 109.47391 * 330.00382 * 25 23 21 29 29 H 1.09009 * 109.46823 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46998 * 299.99466 * 1 2 3 31 31 H 1.08999 * 109.47252 * 59.99846 * 1 2 3 32 32 H 1.09008 * 109.47133 * 240.00316 * 2 1 3 33 33 H 1.08999 * 109.47636 * 120.00829 * 2 1 3 34 34 H 1.08996 * 109.46987 * 179.97438 * 4 3 2 35 35 H 1.09005 * 109.47054 * 300.00037 * 4 3 2 36 36 H 1.08999 * 109.47372 * 59.99990 * 4 3 2 37 37 H 1.09005 * 109.47631 * 300.00038 * 5 3 2 38 38 H 1.09005 * 109.47095 * 59.99608 * 5 3 2 39 39 H 1.08998 * 109.47667 * 179.97438 * 5 3 2 40 40 H 0.97000 * 120.00034 * 0.02562 * 8 6 3 41 41 H 1.09001 * 109.47145 * 64.87399 * 9 8 6 42 42 H 1.09003 * 109.47480 * 304.87274 * 9 8 6 43 43 H 1.09000 * 109.50350 * 59.25369 * 12 10 9 44 44 H 1.08999 * 109.53468 * 299.15294 * 12 10 9 45 45 H 1.09002 * 109.51505 * 182.43483 * 13 12 10 46 46 H 1.09000 * 109.52017 * 62.25185 * 13 12 10 47 47 H 1.09006 * 109.50386 * 297.71985 * 14 13 12 48 48 H 1.08995 * 109.53831 * 177.61708 * 14 13 12 49 49 H 1.09002 * 109.45987 * 180.80723 * 15 14 13 50 50 H 1.09002 * 109.45356 * 60.83515 * 15 14 13 51 51 H 1.09003 * 109.47093 * 193.42189 * 17 16 15 52 52 H 1.09001 * 109.47212 * 313.41787 * 17 16 15 53 53 H 0.96993 * 119.99881 * 359.97438 * 20 18 17 54 54 H 0.97001 * 119.99890 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5300 2.1638 -1.2491 6 6 3.5470 1.4425 -0.0006 7 8 4.1534 0.3922 -0.0015 8 7 4.2208 2.6098 -0.0002 9 6 5.6858 2.6098 -0.0003 10 6 6.1958 4.0470 0.1228 11 1 7.2804 4.0395 0.2306 12 6 5.8137 4.8330 -1.1336 13 6 6.3084 6.2756 -0.9973 14 6 5.7025 6.8978 0.2637 15 6 6.0877 6.0519 1.4795 16 7 5.5914 4.6815 1.3012 17 6 5.8217 3.8769 2.5084 18 6 4.8557 4.2992 3.5853 19 8 4.0546 5.1836 3.3686 20 7 4.8826 3.6946 4.7896 21 6 4.0042 4.0791 5.7694 22 1 3.2909 4.8667 5.5765 23 6 4.0317 3.4555 7.0109 24 7 4.8999 2.4975 7.2459 25 14 2.8352 3.9799 8.3462 26 1 1.5940 3.1709 8.2442 27 1 3.4562 3.7679 9.6783 28 1 2.5042 5.4177 8.1774 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.8937 3.1912 1.2496 35 1 0.4400 2.1636 1.2493 36 1 1.8934 1.6498 2.1393 37 1 1.8932 1.6500 -2.1392 38 1 0.4399 2.1638 -1.2491 39 1 1.8929 3.1916 -1.2490 40 1 3.7358 3.4498 0.0009 41 1 6.0491 2.1738 -0.9309 42 1 6.0492 2.0219 0.8426 43 1 4.7299 4.8293 -1.2496 44 1 6.2747 4.3711 -2.0067 45 1 6.0008 6.8502 -1.8710 46 1 7.3957 6.2821 -0.9203 47 1 4.6169 6.9266 0.1697 48 1 6.0839 7.9110 0.3897 49 1 5.6458 6.4842 2.3773 50 1 7.1728 6.0349 1.5809 51 1 5.6696 2.8226 2.2769 52 1 6.8433 4.0286 2.8568 53 1 5.5235 2.9875 4.9631 54 1 4.9188 2.0619 8.1124 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713255071.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:35 Heat of formation + Delta-G solvation = -111.089545 kcal Electronic energy + Delta-G solvation = -32211.109824 eV Core-core repulsion = 28181.049023 eV Total energy + Delta-G solvation = -4030.060801 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -41.49561 -40.59213 -39.33858 -37.32121 -35.97645 -35.76105 -34.34478 -33.19991 -32.35400 -30.82432 -29.03199 -28.28579 -27.42985 -26.38301 -25.66898 -24.11069 -22.93164 -22.21473 -20.97536 -20.37920 -19.92582 -19.83730 -17.97840 -17.74871 -17.26615 -16.79512 -16.64689 -16.38434 -16.09907 -15.66292 -15.50832 -15.42993 -15.18937 -15.01848 -14.83740 -14.67944 -14.54996 -13.92217 -13.85405 -13.67539 -13.51752 -13.43266 -13.16018 -13.03930 -12.96970 -12.81777 -12.80836 -12.66165 -12.46635 -12.40393 -12.15759 -12.13707 -12.10418 -11.57666 -11.54892 -11.53637 -11.50694 -11.25981 -11.15847 -10.63647 -10.25407 -9.98345 -9.96129 -9.20609 -8.44746 -5.93059 1.37293 1.40285 1.53011 1.68593 2.08590 2.24391 2.31251 2.72939 3.21991 3.38414 3.66816 3.68772 3.78209 3.82684 3.90493 4.01184 4.14138 4.24345 4.26975 4.34656 4.39742 4.42904 4.44417 4.48251 4.55380 4.62208 4.66274 4.68093 4.74195 4.75192 4.89133 4.94521 4.95044 4.98361 5.06446 5.07447 5.09878 5.12570 5.15252 5.23345 5.27611 5.35624 5.41218 5.41722 5.50924 5.53426 5.54861 5.91071 6.10031 6.23511 6.61980 6.62565 7.15034 7.29918 7.58970 8.14291 8.73009 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007579 B = 0.004582 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.452787 B = 6108.975209 C = 8682.789688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.097 4.097 3 C -0.076 4.076 4 C -0.135 4.135 5 C -0.135 4.135 6 C 0.515 3.485 7 O -0.589 6.589 8 N -0.702 5.702 9 C 0.122 3.878 10 C 0.075 3.925 11 H 0.067 0.933 12 C -0.104 4.104 13 C -0.113 4.113 14 C -0.108 4.108 15 C 0.060 3.940 16 N -0.514 5.514 17 C 0.052 3.948 18 C 0.449 3.551 19 O -0.603 6.603 20 N -0.580 5.580 21 C -0.325 4.325 22 H 0.081 0.919 23 C -0.016 4.016 24 N -0.925 5.925 25 Si 0.991 3.009 26 H -0.272 1.272 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.063 0.937 33 H 0.040 0.960 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.030 0.970 37 H 0.064 0.936 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.412 0.588 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.051 0.949 50 H 0.034 0.966 51 H 0.094 0.906 52 H 0.060 0.940 53 H 0.391 0.609 54 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 2.041 -19.920 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.135 4.135 3 C -0.079 4.079 4 C -0.193 4.193 5 C -0.192 4.192 6 C 0.302 3.698 7 O -0.470 6.470 8 N -0.354 5.354 9 C -0.003 4.003 10 C -0.033 4.033 11 H 0.085 0.915 12 C -0.142 4.142 13 C -0.150 4.150 14 C -0.146 4.146 15 C -0.067 4.067 16 N -0.240 5.240 17 C -0.079 4.079 18 C 0.236 3.764 19 O -0.488 6.488 20 N -0.217 5.217 21 C -0.454 4.454 22 H 0.099 0.901 23 C -0.215 4.215 24 N -0.567 5.567 25 Si 0.815 3.185 26 H -0.198 1.198 27 H -0.198 1.198 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.059 0.941 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.085 0.915 40 H 0.250 0.750 41 H 0.103 0.897 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.108 0.892 45 H 0.100 0.900 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.093 0.907 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.112 0.888 52 H 0.078 0.922 53 H 0.224 0.776 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -1.363 1.848 -19.985 20.117 hybrid contribution 0.774 -0.145 1.762 1.930 sum -0.588 1.703 -18.223 18.312 Atomic orbital electron populations 1.21891 0.93486 1.02474 1.02868 1.21307 0.97145 0.93420 1.01644 1.20803 0.89767 0.98630 0.98747 1.21840 1.02833 0.99572 0.95026 1.21889 1.03099 0.99873 0.94328 1.21070 0.90965 0.83231 0.74516 1.90636 1.71347 1.32847 1.52168 1.45844 1.07113 1.08828 1.73582 1.21510 0.80624 0.96235 1.01886 1.22038 0.97469 0.92341 0.91495 0.91527 1.21619 1.02026 0.95294 0.95262 1.21553 1.00462 0.95479 0.97505 1.21516 1.01194 0.98223 0.93698 1.22076 0.96591 0.88412 0.99632 1.61417 1.59393 1.01920 1.01228 1.21763 0.96645 0.99046 0.90447 1.20607 0.87498 0.84739 0.83557 1.90466 1.42772 1.34175 1.81409 1.41969 1.33597 1.34979 1.11198 1.19628 1.14299 1.19138 0.92357 0.90079 1.26028 0.99391 0.95940 1.00141 1.69691 1.36831 1.24976 1.25162 0.84957 0.77882 0.78610 0.77085 1.19781 1.19810 1.19483 0.91989 0.92411 0.90562 0.91823 0.94072 0.92600 0.89283 0.95121 0.91732 0.89335 0.91520 0.75012 0.89736 0.93157 0.91469 0.89179 0.90010 0.91433 0.92294 0.90742 0.93073 0.94766 0.88764 0.92195 0.77637 0.91532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.21 71.98 0.66 -2.10 16 2 C -0.10 -2.40 4.28 30.59 0.13 -2.27 16 3 C -0.08 -1.90 0.64 -52.93 -0.03 -1.93 16 4 C -0.14 -3.76 8.02 71.98 0.58 -3.19 16 5 C -0.13 -2.38 8.02 71.98 0.58 -1.81 16 6 C 0.51 15.63 6.48 87.66 0.57 16.20 16 7 O -0.59 -22.12 15.98 -3.02 -0.05 -22.17 16 8 N -0.70 -18.60 4.92 -463.05 -2.28 -20.87 16 9 C 0.12 2.98 4.59 86.38 0.40 3.37 16 10 C 0.07 1.62 2.10 44.94 0.09 1.72 16 11 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 12 C -0.10 -1.73 5.26 30.65 0.16 -1.57 16 13 C -0.11 -1.78 6.00 30.67 0.18 -1.60 16 14 C -0.11 -2.38 6.09 30.64 0.19 -2.19 16 15 C 0.06 1.74 5.11 86.33 0.44 2.18 16 16 N -0.51 -15.06 3.55 -875.65 -3.11 -18.17 16 17 C 0.05 1.85 5.29 85.56 0.45 2.30 16 18 C 0.45 21.23 7.48 87.66 0.66 21.88 16 19 O -0.60 -31.91 14.55 -3.04 -0.04 -31.95 16 20 N -0.58 -30.31 5.29 -306.98 -1.62 -31.93 16 21 C -0.32 -18.52 9.68 84.04 0.81 -17.71 16 22 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 23 C -0.02 -0.86 5.50 84.93 0.47 -0.40 16 24 N -0.93 -51.41 13.05 21.67 0.28 -51.13 16 25 Si 0.99 43.58 29.55 68.60 2.03 45.61 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 28 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 29 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 30 H 0.06 1.09 6.43 -2.39 -0.02 1.08 16 31 H 0.08 1.11 6.43 -2.39 -0.02 1.09 16 32 H 0.06 1.58 8.10 -2.38 -0.02 1.56 16 33 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 34 H 0.05 1.66 7.56 -2.39 -0.02 1.65 16 35 H 0.09 2.05 6.43 -2.38 -0.02 2.03 16 36 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.09 1.25 6.43 -2.38 -0.02 1.24 16 39 H 0.07 1.10 7.57 -2.39 -0.02 1.08 16 40 H 0.41 10.57 6.13 -92.71 -0.57 10.01 16 41 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 1.45 6.32 -2.39 -0.02 1.44 16 43 H 0.07 1.20 7.14 -2.39 -0.02 1.18 16 44 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 48 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.05 1.91 6.49 -2.39 -0.02 1.89 16 50 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.09 3.32 5.46 -2.39 -0.01 3.30 16 52 H 0.06 1.97 8.03 -2.39 -0.02 1.95 16 53 H 0.39 20.04 7.90 -92.71 -0.73 19.31 16 54 H 0.28 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -70.08 411.49 1.14 -68.94 By element: Atomic # 1 Polarization: 49.18 SS G_CDS: -0.40 Total: 48.78 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.33 Total: 12.89 kcal Atomic # 7 Polarization: -115.37 SS G_CDS: -6.73 Total: -122.10 kcal Atomic # 8 Polarization: -54.02 SS G_CDS: -0.09 Total: -54.12 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -70.08 1.14 -68.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713255071.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.145 kcal (2) G-P(sol) polarization free energy of solvation -70.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds