Wall clock time and date at job start Sat Apr 11 2020 05:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47359 * 2 1 4 4 C 1.53004 * 109.47335 * 120.00297 * 2 1 3 5 5 C 1.53002 * 109.47139 * 59.99569 * 4 2 1 6 6 C 1.52997 * 109.47019 * 299.99512 * 4 2 1 7 7 C 1.50697 * 109.47210 * 179.97438 * 4 2 1 8 8 O 1.21285 * 120.00222 * 0.02562 * 7 4 2 9 9 N 1.34780 * 120.00199 * 179.97438 * 7 4 2 10 10 C 1.46497 * 119.99981 * 180.02562 * 9 7 4 11 11 C 1.53004 * 109.46991 * 180.02562 * 10 9 7 12 12 H 1.08998 * 110.87140 * 57.38835 * 11 10 9 13 13 C 1.55144 * 110.99105 * 293.54713 * 11 10 9 14 14 C 1.54315 * 103.01973 * 206.21847 * 13 11 10 15 15 N 1.47451 * 107.23296 * 22.27991 * 14 13 11 16 16 C 1.46896 * 110.99845 * 123.25814 * 15 14 13 17 17 C 1.50700 * 109.46942 * 69.87372 * 16 15 14 18 18 O 1.21293 * 120.00282 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00075 * 179.97438 * 17 16 15 20 20 C 1.37104 * 120.00173 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99666 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00001 * 180.27893 * 20 19 17 23 23 N 1.31414 * 119.99893 * 359.72318 * 22 20 19 24 24 Si 1.86801 * 119.99957 * 179.72309 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99808 * 24 22 20 26 26 H 1.48504 * 109.46757 * 209.99794 * 24 22 20 27 27 H 1.48492 * 109.47185 * 329.99590 * 24 22 20 28 28 C 1.47846 * 108.56493 * 0.99145 * 15 14 13 29 29 H 1.09006 * 109.46662 * 299.99526 * 1 2 3 30 30 H 1.08999 * 109.47428 * 59.99316 * 1 2 3 31 31 H 1.09003 * 109.47510 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47108 * 240.00319 * 2 1 3 33 33 H 1.09002 * 109.47142 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47168 * 300.00218 * 3 2 1 35 35 H 1.09001 * 109.46750 * 60.00100 * 3 2 1 36 36 H 1.08997 * 109.47168 * 180.02562 * 5 4 2 37 37 H 1.08997 * 109.46793 * 300.00360 * 5 4 2 38 38 H 1.09001 * 109.46750 * 60.00317 * 5 4 2 39 39 H 1.09000 * 109.47675 * 300.00211 * 6 4 2 40 40 H 1.09002 * 109.47072 * 60.00060 * 6 4 2 41 41 H 1.08997 * 109.47167 * 179.97438 * 6 4 2 42 42 H 0.96997 * 119.99706 * 0.02562 * 9 7 4 43 43 H 1.08995 * 109.47381 * 60.00317 * 10 9 7 44 44 H 1.08998 * 109.47212 * 299.99834 * 10 9 7 45 45 H 1.09001 * 110.70646 * 87.82928 * 13 11 10 46 46 H 1.09007 * 110.69888 * 324.60064 * 13 11 10 47 47 H 1.09001 * 109.88577 * 262.87755 * 14 13 11 48 48 H 1.08997 * 110.02678 * 141.76157 * 14 13 11 49 49 H 1.08994 * 109.47346 * 309.87678 * 16 15 14 50 50 H 1.08998 * 109.47279 * 189.87350 * 16 15 14 51 51 H 0.97000 * 120.00140 * 0.02562 * 19 17 16 52 52 H 0.97004 * 119.99542 * 180.02562 * 23 22 20 53 53 H 1.09001 * 110.36964 * 94.73487 * 28 15 14 54 54 H 1.09000 * 110.36860 * 217.07208 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5300 -2.1638 1.2492 6 6 1.5301 -0.0001 2.4985 7 6 3.5470 -0.7219 1.2489 8 8 4.1534 -0.1966 0.3393 9 7 4.2210 -1.3051 2.2599 10 6 5.6859 -1.3051 2.2598 11 6 6.1960 -2.0266 3.5089 12 1 5.8079 -3.0441 3.5554 13 6 5.8357 -1.2352 4.7938 14 6 6.9309 -1.6717 5.7895 15 7 8.0741 -2.1586 4.9956 16 6 9.2989 -1.4187 5.3279 17 6 9.7489 -1.7903 6.7173 18 8 9.1117 -2.5922 7.3671 19 7 10.8593 -1.2316 7.2380 20 6 11.2691 -1.5701 8.5019 21 1 10.7016 -2.2841 9.0804 22 6 12.4106 -0.9897 9.0409 23 7 13.1007 -0.1205 8.3372 24 14 12.9645 -1.4450 10.7658 25 1 13.8877 -2.6063 10.6988 26 1 13.6659 -0.2899 11.3815 27 1 11.7804 -1.8007 11.5882 28 6 7.7441 -2.0201 3.5612 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.8929 -2.6775 2.1394 37 1 0.4400 -2.1637 1.2492 38 1 1.8933 -2.6776 0.3592 39 1 1.8934 1.0276 2.4985 40 1 0.4401 0.0000 2.4985 41 1 1.8931 -0.5142 3.3884 42 1 3.7360 -1.7249 2.9875 43 1 6.0493 -0.2776 2.2595 44 1 6.0492 -1.8193 1.3700 45 1 4.8484 -1.5197 5.1576 46 1 5.8860 -0.1616 4.6118 47 1 6.5547 -2.4717 6.4271 48 1 7.2386 -0.8238 6.4013 49 1 9.0995 -0.3480 5.2848 50 1 10.0815 -1.6717 4.6127 51 1 11.3687 -0.5900 6.7186 52 1 13.8979 0.2844 8.7134 53 1 8.1331 -1.0794 3.1715 54 1 8.1464 -2.8611 2.9964 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713529805.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:10 Heat of formation + Delta-G solvation = -109.318447 kcal Electronic energy + Delta-G solvation = -29960.090609 eV Core-core repulsion = 25930.106609 eV Total energy + Delta-G solvation = -4029.984000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.54160 -40.67104 -39.35238 -37.80210 -36.22603 -35.80898 -33.50936 -33.16144 -32.00287 -30.36069 -28.81085 -28.62695 -27.60413 -26.65351 -25.52693 -24.52506 -22.46296 -21.77919 -21.62274 -20.80156 -19.86497 -19.58709 -17.80963 -17.69840 -17.53292 -16.98544 -16.60106 -16.38975 -16.22835 -15.73476 -15.63534 -15.42784 -15.32704 -14.95817 -14.73775 -14.56966 -14.19720 -14.02763 -13.73510 -13.56221 -13.47516 -13.29043 -13.10166 -13.05669 -13.00312 -12.87357 -12.77683 -12.56052 -12.42209 -12.30716 -12.13281 -12.11936 -12.07904 -11.93469 -11.85540 -11.61488 -11.48942 -11.41601 -11.31366 -10.46631 -10.31817 -10.02454 -10.00658 -9.20217 -8.46425 -5.95264 1.37845 1.41165 1.54034 1.68722 2.05979 2.17998 2.29332 2.82374 3.20115 3.34943 3.59140 3.62872 3.69359 3.77364 3.84868 3.88933 4.20577 4.26287 4.32020 4.33280 4.37639 4.40121 4.44495 4.48378 4.52159 4.60448 4.69437 4.73155 4.77347 4.79026 4.83941 4.90259 4.92477 4.94020 4.99260 5.06415 5.09191 5.15546 5.16000 5.17092 5.27042 5.33178 5.36128 5.40675 5.46484 5.58646 5.63878 5.88641 6.05311 6.13853 6.58536 6.60985 7.13142 7.30392 7.56703 8.12633 8.71051 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.030976 B = 0.001689 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.703455 B =16572.819252 C =16679.481829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.159 4.159 4 C -0.073 4.073 5 C -0.142 4.142 6 C -0.145 4.145 7 C 0.517 3.483 8 O -0.577 6.577 9 N -0.716 5.716 10 C 0.139 3.861 11 C -0.092 4.092 12 H 0.101 0.899 13 C -0.125 4.125 14 C 0.056 3.944 15 N -0.528 5.528 16 C 0.054 3.946 17 C 0.441 3.559 18 O -0.615 6.615 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.271 1.271 26 H -0.271 1.271 27 H -0.273 1.273 28 C 0.048 3.952 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.051 0.949 39 H 0.053 0.947 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.412 0.588 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.060 0.940 48 H 0.030 0.970 49 H 0.066 0.934 50 H 0.107 0.893 51 H 0.395 0.605 52 H 0.277 0.723 53 H 0.057 0.943 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.445 0.696 -16.462 30.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.216 4.216 4 C -0.076 4.076 5 C -0.199 4.199 6 C -0.202 4.202 7 C 0.305 3.695 8 O -0.456 6.456 9 N -0.368 5.368 10 C 0.015 3.985 11 C -0.111 4.111 12 H 0.120 0.880 13 C -0.163 4.163 14 C -0.072 4.072 15 N -0.252 5.252 16 C -0.078 4.078 17 C 0.228 3.772 18 O -0.501 6.501 19 N -0.214 5.214 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.195 1.195 27 H -0.198 1.198 28 C -0.079 4.079 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.249 0.751 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.115 0.885 46 H 0.089 0.911 47 H 0.078 0.922 48 H 0.049 0.951 49 H 0.084 0.916 50 H 0.125 0.875 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.076 0.924 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -25.142 0.119 -16.493 30.069 hybrid contribution 0.966 0.943 0.760 1.549 sum -24.176 1.062 -15.733 28.864 Atomic orbital electron populations 1.21957 0.93151 1.02759 1.02496 1.20874 0.96609 0.95713 0.95777 1.22081 1.01998 0.96069 1.01462 1.20833 0.89249 0.98980 0.98542 1.21951 1.03190 0.92165 1.02620 1.22002 1.03158 1.00087 0.94927 1.21126 0.90972 0.76537 0.80908 1.90634 1.71360 1.46153 1.37493 1.45928 1.06949 1.58426 1.25476 1.21122 0.80038 1.00113 0.97271 1.22391 0.94819 1.00592 0.93323 0.88036 1.22854 0.99286 1.00035 0.94150 1.22632 0.90644 0.97968 0.95945 1.63163 1.02201 1.54854 1.05008 1.21918 0.94852 0.96970 0.94055 1.20792 0.82383 0.84212 0.89768 1.90480 1.57431 1.38402 1.63763 1.41947 1.23885 1.40154 1.15423 1.19659 1.09411 1.24628 0.92515 0.90336 1.26045 0.95795 0.95850 1.03669 1.69680 1.18197 1.28965 1.39410 0.84919 0.78229 0.78077 0.77050 1.19642 1.19544 1.19769 1.23104 0.95027 1.01899 0.87895 0.91349 0.92570 0.91237 0.92648 0.92762 0.93007 0.92253 0.90882 0.89321 0.93010 0.92777 0.89366 0.91008 0.75082 0.92400 0.91502 0.88526 0.91077 0.92173 0.95102 0.91607 0.87500 0.77116 0.91347 0.92423 0.89147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.49 71.98 0.61 -0.69 16 2 C -0.07 -0.99 1.92 -10.79 -0.02 -1.02 16 3 C -0.16 -2.69 8.52 71.98 0.61 -2.08 16 4 C -0.07 -0.88 0.43 -52.93 -0.02 -0.90 16 5 C -0.14 -1.16 8.02 71.98 0.58 -0.59 16 6 C -0.14 -1.27 7.66 71.98 0.55 -0.72 16 7 C 0.52 9.42 6.19 87.66 0.54 9.96 16 8 O -0.58 -15.40 13.66 -3.05 -0.04 -15.44 16 9 N -0.72 -10.21 5.19 -463.06 -2.40 -12.62 16 10 C 0.14 2.32 5.12 86.38 0.44 2.77 16 11 C -0.09 -1.58 3.10 -9.41 -0.03 -1.61 16 12 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 13 C -0.12 -2.39 6.12 31.78 0.19 -2.20 16 14 C 0.06 1.69 5.65 86.64 0.49 2.18 16 15 N -0.53 -16.84 4.85 -890.12 -4.32 -21.16 16 16 C 0.05 1.89 5.03 85.56 0.43 2.33 16 17 C 0.44 21.40 7.43 87.66 0.65 22.05 16 18 O -0.62 -34.44 15.12 -3.07 -0.05 -34.48 16 19 N -0.58 -30.10 5.29 -306.98 -1.62 -31.73 16 20 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 21 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 22 C -0.01 -0.76 5.50 84.92 0.47 -0.29 16 23 N -0.92 -50.25 13.05 21.66 0.28 -49.96 16 24 Si 0.99 43.29 29.55 68.60 2.03 45.32 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 26 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 27 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 28 C 0.05 1.08 6.15 86.77 0.53 1.62 16 29 H 0.07 0.49 6.43 -2.38 -0.02 0.47 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.46 6.43 -2.39 -0.02 0.45 16 32 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 33 H 0.05 1.25 5.51 -2.39 -0.01 1.24 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 0.86 6.43 -2.39 -0.02 0.85 16 36 H 0.07 0.42 7.57 -2.39 -0.02 0.41 16 37 H 0.09 0.45 6.43 -2.39 -0.02 0.44 16 38 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.05 0.62 6.43 -2.39 -0.02 0.60 16 40 H 0.09 0.50 6.43 -2.39 -0.02 0.49 16 41 H 0.07 0.46 7.56 -2.39 -0.02 0.45 16 42 H 0.41 3.83 7.17 -92.71 -0.67 3.17 16 43 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.07 1.35 8.01 -2.38 -0.02 1.33 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.03 1.06 7.31 -2.39 -0.02 1.04 16 49 H 0.07 2.11 7.96 -2.39 -0.02 2.09 16 50 H 0.11 3.36 8.07 -2.39 -0.02 3.35 16 51 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 52 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 53 H 0.06 1.20 7.71 -2.39 -0.02 1.18 16 54 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -73.65 413.19 0.22 -73.43 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.50 Total: 34.15 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: 6.85 Total: 12.50 kcal Atomic # 7 Polarization: -107.40 SS G_CDS: -8.06 Total: -115.47 kcal Atomic # 8 Polarization: -49.84 SS G_CDS: -0.09 Total: -49.93 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -73.65 0.22 -73.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713529805.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.889 kcal (2) G-P(sol) polarization free energy of solvation -73.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds