Wall clock time and date at job start Sat Apr 11 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46982 * 2 1 4 4 C 1.52995 * 109.47414 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47547 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.47569 * 179.97438 * 5 4 3 7 7 O 1.21285 * 119.99890 * 0.02562 * 6 5 4 8 8 N 1.34773 * 120.00379 * 179.97438 * 6 5 4 9 9 C 1.46504 * 120.00130 * 359.97438 * 8 6 5 10 10 C 1.46499 * 120.00024 * 180.02562 * 8 6 5 11 11 C 1.53118 * 109.52490 * 120.00048 * 10 8 6 12 12 C 1.53036 * 109.28068 * 177.61960 * 11 10 8 13 13 N 1.46843 * 109.52229 * 300.82162 * 12 11 10 14 14 C 1.46902 * 110.99818 * 185.83572 * 13 12 11 15 15 C 1.50702 * 109.47027 * 169.99758 * 14 13 12 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00325 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47047 * 89.99811 * 22 20 18 24 24 H 1.48501 * 109.47447 * 210.00167 * 22 20 18 25 25 H 1.48499 * 109.46902 * 330.00508 * 22 20 18 26 26 C 1.46843 * 111.20082 * 61.74351 * 13 12 11 27 27 C 1.53038 * 109.52070 * 298.25410 * 26 13 12 28 28 H 1.08996 * 109.46655 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46743 * 299.99571 * 1 2 3 30 30 H 1.08993 * 109.47190 * 59.99613 * 1 2 3 31 31 H 1.08999 * 109.47209 * 240.00528 * 2 1 3 32 32 H 1.08997 * 109.47500 * 120.00000 * 2 1 3 33 33 H 1.09012 * 109.46931 * 60.00384 * 3 2 1 34 34 H 1.09002 * 109.47695 * 300.00210 * 3 2 1 35 35 H 1.08998 * 109.47079 * 59.99840 * 4 3 2 36 36 H 1.09006 * 109.47160 * 300.00327 * 4 3 2 37 37 H 1.09002 * 109.47577 * 60.00085 * 5 4 3 38 38 H 1.09002 * 109.47427 * 300.00115 * 5 4 3 39 39 H 1.08998 * 109.46821 * 270.00537 * 9 8 6 40 40 H 1.09004 * 109.46846 * 30.00177 * 9 8 6 41 41 H 1.09000 * 109.47182 * 149.99869 * 9 8 6 42 42 H 1.08996 * 109.52259 * 359.87125 * 10 8 6 43 43 H 1.08995 * 109.50555 * 57.67842 * 11 10 8 44 44 H 1.08995 * 109.50409 * 297.56383 * 11 10 8 45 45 H 1.08996 * 109.46465 * 180.80442 * 12 11 10 46 46 H 1.09004 * 109.45131 * 60.83038 * 12 11 10 47 47 H 1.09004 * 109.47131 * 50.00001 * 14 13 12 48 48 H 1.08994 * 109.47471 * 289.99751 * 14 13 12 49 49 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 50 50 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 51 51 H 1.08997 * 109.46379 * 58.26863 * 26 13 12 52 52 H 1.09000 * 109.46577 * 178.24622 * 26 13 12 53 53 H 1.09001 * 109.50668 * 299.24264 * 27 26 13 54 54 H 1.08995 * 109.50406 * 179.11983 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4427 -0.0006 5 6 4.0799 2.8851 0.0000 6 6 5.5869 2.8852 0.0000 7 8 6.1934 1.8349 -0.0009 8 7 6.2608 4.0524 0.0000 9 6 5.5283 5.3212 -0.0006 10 6 7.7258 4.0524 -0.0006 11 6 8.2370 4.7743 -1.2504 12 6 9.7662 4.8232 -1.2157 13 7 10.2073 5.5292 -0.0060 14 6 11.6643 5.7168 -0.0077 15 6 12.0520 6.6490 1.1112 16 8 11.1987 7.1112 1.8387 17 7 13.3476 6.9642 1.3071 18 6 13.7010 7.8078 2.3285 19 1 12.9411 8.2194 2.9763 20 6 15.0367 8.1332 2.5302 21 7 15.9612 7.6328 1.7417 22 14 15.5181 9.2832 3.9214 23 1 15.7831 8.4910 5.1491 24 1 16.7423 10.0334 3.5424 25 1 14.4113 10.2393 4.1786 26 6 9.7684 4.8285 1.2076 27 6 8.2392 4.7798 1.2452 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.6767 1.9564 0.8901 34 1 1.6767 1.9565 -0.8899 35 1 3.9329 0.9290 -0.8908 36 1 3.9337 0.9286 0.8891 37 1 3.7170 3.3985 0.8904 38 1 3.7162 3.3995 -0.8895 39 1 5.3470 5.6355 -1.0284 40 1 4.5757 5.1909 0.5130 41 1 6.1171 6.0809 0.5133 42 1 8.0900 3.0251 0.0014 43 1 7.8409 5.7895 -1.2719 44 1 7.9102 4.2367 -2.1404 45 1 10.1329 5.3492 -2.0971 46 1 10.1618 3.8075 -1.2080 47 1 11.9744 6.1446 -0.9610 48 1 12.1547 4.7540 0.1352 49 1 14.0302 6.5944 0.7255 50 1 16.8936 7.8603 1.8823 51 1 10.1641 3.8129 1.2037 52 1 10.1365 5.3583 2.0861 53 1 7.8431 5.7951 1.2629 54 1 7.9140 4.2460 2.1382 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713781805.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:24 Heat of formation + Delta-G solvation = -111.388409 kcal Electronic energy + Delta-G solvation = -29618.073065 eV Core-core repulsion = 25587.999305 eV Total energy + Delta-G solvation = -4030.073760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.38768 -40.44078 -39.11825 -36.98150 -36.59279 -35.85724 -33.77684 -33.24658 -32.60829 -31.84840 -29.10905 -28.09523 -27.65657 -26.26871 -24.35829 -24.16922 -22.92154 -21.82790 -21.03882 -20.71206 -19.96646 -19.85954 -17.99158 -17.78047 -17.38297 -17.13739 -16.66449 -16.38693 -16.32746 -16.09766 -15.60768 -15.38791 -15.16627 -14.86840 -14.75108 -14.46547 -14.24898 -14.08421 -13.99026 -13.84090 -13.78816 -13.49402 -13.22952 -13.15964 -12.91560 -12.82266 -12.72062 -12.50595 -12.41787 -12.29539 -12.18449 -12.10672 -11.89463 -11.82136 -11.70901 -11.66231 -11.53596 -11.39794 -11.36199 -10.75223 -10.25003 -9.98627 -9.62047 -9.22481 -8.45227 -5.93704 1.38366 1.42050 1.54727 1.63420 1.99592 2.07017 2.28994 2.74755 3.21630 3.38278 3.52431 3.80010 3.85477 3.87352 4.02339 4.02781 4.17900 4.22787 4.27455 4.30778 4.35575 4.36835 4.45081 4.47099 4.48849 4.54412 4.62433 4.65888 4.69619 4.72798 4.77097 4.87497 4.90994 4.94709 4.95506 4.98826 5.05785 5.08128 5.11884 5.13484 5.25148 5.31117 5.37352 5.42209 5.46112 5.52975 5.56635 5.88947 6.07748 6.21786 6.43658 6.62277 7.14525 7.18592 7.58316 8.13969 8.72261 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032161 B = 0.001645 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.415960 B =17015.230800 C =17308.681207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.103 4.103 5 C -0.130 4.130 6 C 0.503 3.497 7 O -0.593 6.593 8 N -0.609 5.609 9 C 0.067 3.933 10 C 0.142 3.858 11 C -0.109 4.109 12 C 0.057 3.943 13 N -0.527 5.527 14 C 0.056 3.944 15 C 0.442 3.558 16 O -0.612 6.612 17 N -0.575 5.575 18 C -0.332 4.332 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.272 1.272 26 C 0.058 3.942 27 C -0.107 4.107 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.048 0.952 37 H 0.115 0.885 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.035 0.965 47 H 0.114 0.886 48 H 0.062 0.938 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.024 0.976 52 H 0.068 0.932 53 H 0.075 0.925 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.648 -9.827 -8.525 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.167 4.167 3 C -0.150 4.150 4 C -0.141 4.141 5 C -0.169 4.169 6 C 0.294 3.706 7 O -0.474 6.474 8 N -0.341 5.341 9 C -0.074 4.074 10 C 0.038 3.962 11 C -0.148 4.148 12 C -0.071 4.071 13 N -0.252 5.252 14 C -0.075 4.075 15 C 0.230 3.770 16 O -0.498 6.498 17 N -0.212 5.212 18 C -0.461 4.461 19 H 0.098 0.902 20 C -0.212 4.212 21 N -0.563 5.563 22 Si 0.816 3.184 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.197 1.197 26 C -0.070 4.070 27 C -0.145 4.145 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.099 0.901 45 H 0.113 0.887 46 H 0.053 0.947 47 H 0.132 0.868 48 H 0.080 0.920 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.042 0.958 52 H 0.086 0.914 53 H 0.094 0.906 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.934 -9.560 -8.056 29.694 hybrid contribution 1.685 -0.512 0.563 1.848 sum -25.250 -10.071 -7.493 28.198 Atomic orbital electron populations 1.21764 0.95085 1.01819 1.02171 1.21550 0.96460 0.97059 1.01640 1.21587 0.93347 0.97001 1.03049 1.21318 0.96076 0.94887 1.01819 1.21766 0.88671 1.00047 1.06401 1.21546 0.91957 0.82586 0.74546 1.90670 1.71676 1.32813 1.52226 1.48056 1.06029 1.07408 1.72570 1.22079 0.97602 0.84268 1.03478 1.20996 0.80020 0.99850 0.95342 1.21802 0.94322 1.01660 0.96987 1.22174 0.95713 0.96685 0.92559 1.61526 1.10634 1.50391 1.02677 1.21731 0.89298 0.97966 0.98464 1.20733 0.82392 0.85825 0.88089 1.90454 1.50149 1.58404 1.50763 1.41938 1.06657 1.42969 1.29671 1.19662 0.92963 1.24183 1.09301 0.90245 1.26014 0.94870 0.99537 1.00812 1.69675 1.01775 1.45383 1.39440 0.84941 0.77813 0.77961 0.77706 1.19793 1.19584 1.19701 1.22058 0.95792 0.95190 0.93964 1.21741 0.94075 1.01277 0.97426 0.92772 0.92410 0.92252 0.92525 0.92729 0.90981 0.90730 0.92961 0.93308 0.86702 0.86355 0.90661 0.88449 0.90975 0.90849 0.90094 0.90107 0.88653 0.94663 0.86840 0.91974 0.77104 0.91376 0.95788 0.91409 0.90631 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.62 16 2 C -0.13 -1.44 5.93 30.60 0.18 -1.26 16 3 C -0.11 -1.11 5.21 30.59 0.16 -0.95 16 4 C -0.10 -1.52 4.50 30.59 0.14 -1.38 16 5 C -0.13 -1.60 4.25 29.85 0.13 -1.48 16 6 C 0.50 10.92 7.67 87.66 0.67 11.59 16 7 O -0.59 -18.51 15.31 -3.04 -0.05 -18.56 16 8 N -0.61 -11.90 2.77 -822.13 -2.28 -14.18 16 9 C 0.07 0.81 9.26 127.77 1.18 1.99 16 10 C 0.14 3.43 2.59 45.07 0.12 3.55 16 11 C -0.11 -2.32 5.41 30.65 0.17 -2.15 16 12 C 0.06 1.37 5.46 86.33 0.47 1.84 16 13 N -0.53 -17.08 4.40 -900.95 -3.96 -21.04 16 14 C 0.06 1.98 5.45 85.56 0.47 2.45 16 15 C 0.44 21.07 7.46 87.66 0.65 21.72 16 16 O -0.61 -33.40 13.90 -3.07 -0.04 -33.44 16 17 N -0.57 -29.61 5.29 -306.98 -1.62 -31.24 16 18 C -0.33 -18.86 9.68 84.04 0.81 -18.04 16 19 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 20 C -0.01 -0.68 5.50 84.92 0.47 -0.22 16 21 N -0.92 -49.99 13.05 21.66 0.28 -49.71 16 22 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 C 0.06 1.97 5.10 86.33 0.44 2.41 16 27 C -0.11 -2.94 5.40 30.65 0.17 -2.78 16 28 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.59 8.14 -2.38 -0.02 0.58 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 36 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16 37 H 0.11 0.94 7.40 -2.39 -0.02 0.93 16 38 H 0.12 0.88 8.11 -2.39 -0.02 0.86 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.10 0.66 6.44 -2.39 -0.02 0.64 16 41 H 0.07 1.02 6.38 -2.39 -0.02 1.01 16 42 H 0.07 2.15 6.90 -2.39 -0.02 2.14 16 43 H 0.08 1.67 7.60 -2.39 -0.02 1.65 16 44 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 2.00 8.01 -2.39 -0.02 1.98 16 46 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 47 H 0.11 3.44 7.99 -2.38 -0.02 3.42 16 48 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 49 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.07 2.84 5.78 -2.39 -0.01 2.83 16 53 H 0.08 2.11 6.58 -2.39 -0.02 2.09 16 54 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -72.83 420.98 1.43 -71.40 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.14 Total: 34.98 kcal Atomic # 6 Polarization: 9.74 SS G_CDS: 6.94 Total: 16.68 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -7.58 Total: -116.16 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: -0.09 Total: -52.00 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -72.83 1.43 -71.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713781805.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.992 kcal (2) G-P(sol) polarization free energy of solvation -72.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds