Wall clock time and date at job start Sat Apr 11 2020 05:51:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21278 * 120.00059 * 2 1 4 4 N 1.34776 * 119.99890 * 180.02562 * 2 1 3 5 5 C 1.46498 * 119.99916 * 179.97438 * 4 2 1 6 6 H 1.09007 * 109.47393 * 180.02562 * 5 4 2 7 7 C 1.53003 * 109.47325 * 60.00172 * 5 4 2 8 8 C 1.53000 * 109.47095 * 62.80194 * 7 5 4 9 9 C 1.53001 * 109.47153 * 185.15291 * 8 7 5 10 10 C 1.52996 * 109.46797 * 173.84400 * 9 8 7 11 11 C 1.53002 * 109.46648 * 293.84113 * 9 8 7 12 12 C 1.50701 * 109.47314 * 299.99885 * 5 4 2 13 13 O 1.21281 * 120.00086 * 12.14872 * 12 5 4 14 14 N 1.34780 * 119.99779 * 192.14381 * 12 5 4 15 15 C 1.46506 * 119.99534 * 185.21791 * 14 12 5 16 16 C 1.52995 * 109.47047 * 276.27762 * 15 14 12 17 17 H 1.09005 * 109.87487 * 62.98548 * 16 15 14 18 18 C 1.54327 * 109.88099 * 184.15575 * 16 15 14 19 19 C 1.55155 * 102.94202 * 141.61220 * 18 16 15 20 20 C 1.55129 * 101.48580 * 324.33637 * 19 18 16 21 21 N 1.47016 * 109.88599 * 301.96784 * 16 15 14 22 22 C 1.36935 * 125.65012 * 61.60712 * 21 16 15 23 23 H 1.07998 * 119.99612 * 13.33883 * 22 21 16 24 24 C 1.38815 * 120.00254 * 193.61608 * 22 21 16 25 25 N 1.31617 * 119.99565 * 12.72658 * 24 22 21 26 26 Si 1.86798 * 119.99967 * 192.72714 * 24 22 21 27 27 H 1.48495 * 109.47093 * 65.00000 * 26 24 22 28 28 H 1.48505 * 109.46771 * 184.99528 * 26 24 22 29 29 H 1.48501 * 109.47107 * 304.99230 * 26 24 22 30 30 H 1.08999 * 109.47147 * 269.99422 * 1 2 3 31 31 H 1.08999 * 109.47298 * 29.99153 * 1 2 3 32 32 H 1.09005 * 109.47193 * 149.99476 * 1 2 3 33 33 H 0.97004 * 120.00429 * 359.97438 * 4 2 1 34 34 H 1.08996 * 109.47830 * 182.80654 * 7 5 4 35 35 H 1.09004 * 109.46426 * 302.80580 * 7 5 4 36 36 H 1.09006 * 109.47366 * 305.15253 * 8 7 5 37 37 H 1.09005 * 109.46985 * 65.15086 * 8 7 5 38 38 H 1.08990 * 109.47364 * 53.84090 * 9 8 7 39 39 H 1.09003 * 109.47748 * 60.00186 * 10 9 8 40 40 H 1.09005 * 109.47134 * 179.97438 * 10 9 8 41 41 H 1.09001 * 109.47394 * 299.99312 * 10 9 8 42 42 H 1.08996 * 109.47473 * 65.83903 * 11 9 8 43 43 H 1.09007 * 109.46557 * 185.83271 * 11 9 8 44 44 H 1.08998 * 109.47054 * 305.82977 * 11 9 8 45 45 H 0.96996 * 120.00587 * 5.22234 * 14 12 5 46 46 H 1.08997 * 109.46588 * 156.27954 * 15 14 12 47 47 H 1.08998 * 109.47065 * 36.27849 * 15 14 12 48 48 H 1.08993 * 110.72549 * 259.97478 * 18 16 15 49 49 H 1.08998 * 110.71879 * 23.07411 * 18 16 15 50 50 H 1.09003 * 111.00511 * 82.57446 * 19 18 16 51 51 H 1.09002 * 111.01078 * 206.42526 * 19 18 16 52 52 H 1.08997 * 110.49623 * 278.45154 * 20 19 18 53 53 H 1.08998 * 110.34712 * 156.05966 * 20 19 18 54 54 H 0.97006 * 119.99782 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 1 4.0092 -2.1949 -0.0019 7 6 4.1563 -0.4463 1.2481 8 6 3.7052 -1.2074 2.4964 9 6 4.1044 -0.4199 3.7460 10 6 3.5211 -1.1008 4.9857 11 6 5.6299 -0.3787 3.8569 12 6 4.1477 -0.4566 -1.2316 13 8 3.3815 0.1920 -1.9122 14 7 5.4481 -0.5417 -1.5756 15 6 5.9598 0.2398 -2.7043 16 6 5.6880 -0.5111 -4.0093 17 1 4.6135 -0.6160 -4.1596 18 6 6.3148 0.2530 -5.1947 19 6 6.8560 -0.8879 -6.0963 20 6 7.3233 -1.9221 -5.0386 21 7 6.3183 -1.8384 -3.9632 22 6 6.0248 -2.8306 -3.0662 23 1 5.1380 -2.7599 -2.4540 24 6 6.8702 -3.9243 -2.9397 25 7 8.0676 -3.8970 -3.4854 26 14 6.3083 -5.4348 -1.9952 27 1 5.1648 -6.0643 -2.7031 28 1 7.4283 -6.4056 -1.9027 29 1 5.8855 -5.0352 -0.6288 30 1 -0.3633 -0.0001 1.0276 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8900 -0.5139 33 1 1.6958 -2.0073 -0.0005 34 1 5.2451 -0.4024 1.2230 35 1 3.7525 0.5659 1.2740 36 1 2.6224 -1.3308 2.4752 37 1 4.1822 -2.1873 2.5166 38 1 3.7178 0.5965 3.6738 39 1 3.9079 -2.1173 5.0579 40 1 3.8059 -0.5400 5.8760 41 1 2.4344 -1.1302 4.9067 42 1 6.0392 0.1965 3.0264 43 1 5.9130 0.0914 4.7988 44 1 6.0241 -1.3944 3.8248 45 1 6.0451 -1.1203 -1.0761 46 1 7.0333 0.3874 -2.5868 47 1 5.4606 1.2083 -2.7316 48 1 5.5588 0.8350 -5.7215 49 1 7.1259 0.8961 -4.8533 50 1 6.0654 -1.2973 -6.7252 51 1 7.6951 -0.5436 -6.7008 52 1 8.3098 -1.6589 -4.6573 53 1 7.3366 -2.9238 -5.4682 54 1 8.6583 -4.6615 -3.3974 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714625829.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:36 Heat of formation + Delta-G solvation = -89.818563 kcal Electronic energy + Delta-G solvation = -32092.866852 eV Core-core repulsion = 28063.728431 eV Total energy + Delta-G solvation = -4029.138422 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.05 seconds Orbital eigenvalues (eV) -41.52935 -39.95378 -38.85104 -37.87363 -35.63894 -35.27979 -34.48782 -32.71658 -31.11972 -30.52194 -30.14195 -27.98912 -27.70085 -26.53394 -25.18854 -23.41846 -22.28558 -21.76592 -21.14691 -20.74607 -20.52812 -18.72805 -18.38708 -18.31314 -17.08597 -16.83932 -16.39097 -16.20049 -16.04760 -15.83927 -15.67872 -15.47661 -15.07587 -14.72510 -14.47503 -14.24644 -13.94289 -13.85232 -13.70583 -13.63076 -13.53217 -13.25358 -13.08333 -12.99937 -12.89375 -12.78566 -12.66955 -12.53281 -12.51447 -12.14657 -12.05467 -12.00646 -11.66014 -11.63289 -11.51583 -11.48755 -11.44781 -11.40901 -10.96003 -10.57255 -10.53993 -9.87316 -9.75005 -8.74620 -7.79156 -5.11412 1.46762 1.53054 1.57628 1.75532 1.88990 2.29303 2.53915 2.62131 3.40442 3.69782 3.73337 3.88020 3.91995 4.02810 4.05301 4.08228 4.17582 4.20357 4.29027 4.32507 4.48204 4.50181 4.53862 4.66217 4.67157 4.70493 4.75979 4.82331 4.83153 4.85766 4.93507 4.98373 5.00412 5.06278 5.08584 5.09637 5.18643 5.19592 5.27076 5.36466 5.46602 5.48964 5.50763 5.52398 5.57496 5.66473 5.73065 5.78794 6.28146 6.70346 6.78397 7.16107 7.42609 7.54284 7.86060 8.56600 9.33266 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.009848 B = 0.004076 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2842.490238 B = 6867.905260 C = 8136.369613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.508 3.492 3 O -0.573 6.573 4 N -0.708 5.708 5 C 0.133 3.867 6 H 0.123 0.877 7 C -0.119 4.119 8 C -0.101 4.101 9 C -0.096 4.096 10 C -0.142 4.142 11 C -0.149 4.149 12 C 0.498 3.502 13 O -0.570 6.570 14 N -0.701 5.701 15 C 0.121 3.879 16 C 0.142 3.858 17 H 0.011 0.989 18 C -0.115 4.115 19 C -0.133 4.133 20 C 0.179 3.821 21 N -0.606 5.606 22 C -0.215 4.215 23 H 0.074 0.926 24 C -0.059 4.059 25 N -0.944 5.944 26 Si 0.957 3.043 27 H -0.292 1.292 28 H -0.303 1.303 29 H -0.257 1.257 30 H 0.114 0.886 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.418 0.582 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.406 0.594 46 H 0.075 0.925 47 H 0.060 0.940 48 H 0.079 0.921 49 H 0.080 0.920 50 H 0.058 0.942 51 H 0.086 0.914 52 H 0.008 0.992 53 H 0.020 0.980 54 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.086 4.581 12.555 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.297 3.703 3 O -0.452 6.452 4 N -0.362 5.362 5 C 0.024 3.976 6 H 0.140 0.860 7 C -0.157 4.157 8 C -0.139 4.139 9 C -0.114 4.114 10 C -0.199 4.199 11 C -0.207 4.207 12 C 0.284 3.716 13 O -0.448 6.448 14 N -0.350 5.350 15 C -0.006 4.006 16 C 0.035 3.965 17 H 0.029 0.971 18 C -0.153 4.153 19 C -0.172 4.172 20 C 0.053 3.947 21 N -0.330 5.330 22 C -0.345 4.345 23 H 0.092 0.908 24 C -0.252 4.252 25 N -0.593 5.593 26 Si 0.786 3.214 27 H -0.220 1.220 28 H -0.229 1.229 29 H -0.181 1.181 30 H 0.133 0.867 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.242 0.758 46 H 0.094 0.906 47 H 0.078 0.922 48 H 0.098 0.902 49 H 0.099 0.901 50 H 0.076 0.924 51 H 0.104 0.896 52 H 0.026 0.974 53 H 0.039 0.961 54 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -10.125 5.630 12.163 16.798 hybrid contribution 0.303 -1.606 0.161 1.642 sum -9.822 4.024 12.324 16.265 Atomic orbital electron populations 1.21848 0.88819 1.05459 1.05967 1.21383 0.91900 0.83061 0.73990 1.90660 1.71629 1.33062 1.49819 1.45635 1.05009 1.09622 1.75909 1.20896 0.82633 1.01389 0.92694 0.85962 1.21846 1.01070 1.00245 0.92564 1.21571 1.01459 0.98712 0.92157 1.21085 0.96161 0.99093 0.95086 1.21800 1.00752 1.00725 0.96672 1.21889 0.95224 1.02032 1.01508 1.21279 0.82276 0.81195 0.86890 1.90631 1.56088 1.43271 1.54855 1.45712 1.09802 1.46499 1.32991 1.21793 0.98249 0.93561 0.86950 1.21399 0.94754 0.86104 0.94264 0.97116 1.22496 1.00483 0.97030 0.95297 1.22887 1.00605 0.96443 0.97247 1.21178 0.90794 0.95553 0.87130 1.44755 1.43557 1.10644 1.34075 1.19114 1.03706 0.97482 1.14179 0.90779 1.25505 0.95663 1.01661 1.02407 1.70147 1.07708 1.30319 1.51080 0.85461 0.76339 0.79989 0.79577 1.21968 1.22948 1.18115 0.86731 0.89946 0.88159 0.74491 0.90744 0.91844 0.91339 0.90938 0.92589 0.92248 0.92356 0.92438 0.93488 0.92249 0.92252 0.75846 0.90631 0.92180 0.90229 0.90150 0.92368 0.89579 0.97433 0.96108 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 10.30 71.23 0.73 -2.09 16 2 C 0.51 14.23 6.65 87.66 0.58 14.81 16 3 O -0.57 -21.97 13.22 18.60 0.25 -21.72 16 4 N -0.71 -17.21 4.42 -446.09 -1.97 -19.18 16 5 C 0.13 3.77 3.04 44.25 0.13 3.91 16 6 H 0.12 3.09 8.14 -2.38 -0.02 3.07 16 7 C -0.12 -3.03 4.19 30.60 0.13 -2.90 16 8 C -0.10 -1.97 4.60 30.59 0.14 -1.83 16 9 C -0.10 -1.76 2.91 -10.79 -0.03 -1.79 16 10 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 11 C -0.15 -2.74 8.83 71.98 0.64 -2.10 16 12 C 0.50 18.76 6.41 87.66 0.56 19.32 16 13 O -0.57 -25.76 13.58 18.59 0.25 -25.51 16 14 N -0.70 -26.21 3.41 -463.05 -1.58 -27.78 16 15 C 0.12 4.67 5.50 86.38 0.48 5.14 16 16 C 0.14 6.01 3.45 45.34 0.16 6.16 16 17 H 0.01 0.53 8.00 -2.38 -0.02 0.51 16 18 C -0.11 -3.97 6.47 31.78 0.21 -3.76 16 19 C -0.13 -4.90 7.10 32.06 0.23 -4.67 16 20 C 0.18 8.54 5.39 86.93 0.47 9.01 16 21 N -0.61 -29.56 3.12 -667.84 -2.09 -31.65 16 22 C -0.22 -11.04 8.42 84.03 0.71 -10.34 16 23 H 0.07 3.68 6.84 -2.91 -0.02 3.66 16 24 C -0.06 -3.10 5.34 84.86 0.45 -2.64 16 25 N -0.94 -53.81 10.96 21.65 0.24 -53.57 16 26 Si 0.96 42.17 29.57 68.60 2.03 44.20 16 27 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 28 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 29 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 30 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.42 7.07 8.83 -92.71 -0.82 6.25 16 34 H 0.07 1.88 6.99 -2.39 -0.02 1.87 16 35 H 0.06 2.01 6.09 -2.39 -0.01 1.99 16 36 H 0.07 1.24 7.54 -2.38 -0.02 1.23 16 37 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.05 0.95 7.01 -2.39 -0.02 0.94 16 43 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.41 14.72 8.23 -92.71 -0.76 13.96 16 46 H 0.08 2.79 8.09 -2.39 -0.02 2.77 16 47 H 0.06 2.32 7.70 -2.39 -0.02 2.31 16 48 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 49 H 0.08 2.51 7.81 -2.39 -0.02 2.49 16 50 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 51 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 52 H 0.01 0.40 7.98 -2.39 -0.02 0.38 16 53 H 0.02 1.11 7.28 -2.39 -0.02 1.10 16 54 H 0.24 13.77 8.31 -92.70 -0.77 13.00 16 Total: -1.00 -74.25 418.09 2.67 -71.58 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.70 Total: 38.86 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: 6.24 Total: 24.78 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -5.40 Total: -132.19 kcal Atomic # 8 Polarization: -47.73 SS G_CDS: 0.50 Total: -47.23 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -74.25 2.67 -71.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714625829.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.236 kcal (2) G-P(sol) polarization free energy of solvation -74.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.05 seconds