Wall clock time and date at job start Sat Apr 11 2020 05:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 120.00566 * 2 1 4 4 N 1.34777 * 120.00223 * 179.97438 * 2 1 3 5 5 C 1.46497 * 120.00643 * 180.02562 * 4 2 1 6 6 H 1.08992 * 109.47391 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47112 * 59.99792 * 5 4 2 8 8 C 1.52999 * 109.46846 * 65.00391 * 7 5 4 9 9 C 1.53006 * 109.47054 * 179.97438 * 8 7 5 10 10 C 1.52997 * 109.47127 * 174.99886 * 9 8 7 11 11 C 1.52992 * 109.47223 * 295.00392 * 9 8 7 12 12 C 1.50703 * 109.46835 * 300.00189 * 5 4 2 13 13 O 1.21283 * 120.00237 * 19.99805 * 12 5 4 14 14 N 1.34780 * 119.99984 * 200.00163 * 12 5 4 15 15 C 1.46500 * 119.99733 * 180.02562 * 14 12 5 16 16 C 1.53005 * 109.46714 * 180.02562 * 15 14 12 17 17 H 1.09002 * 110.63847 * 305.68930 * 16 15 14 18 18 C 1.55158 * 110.71796 * 182.55983 * 16 15 14 19 19 C 1.54910 * 101.57889 * 206.13095 * 18 16 15 20 20 N 1.47424 * 104.83633 * 37.00656 * 19 18 16 21 21 C 1.36935 * 125.65466 * 155.90681 * 20 19 18 22 22 H 1.07997 * 120.00658 * 179.97438 * 21 20 19 23 23 C 1.38815 * 119.99643 * 359.97438 * 21 20 19 24 24 N 1.31626 * 119.99953 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 119.99957 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47166 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47184 * 120.00120 * 25 23 21 28 28 H 1.48505 * 109.47188 * 240.00095 * 25 23 21 29 29 C 1.47323 * 108.73139 * 335.71956 * 20 19 18 30 30 H 1.08998 * 109.47005 * 270.00646 * 1 2 3 31 31 H 1.09002 * 109.46816 * 30.00084 * 1 2 3 32 32 H 1.08995 * 109.47079 * 149.99657 * 1 2 3 33 33 H 0.97006 * 119.99533 * 0.02562 * 4 2 1 34 34 H 1.08994 * 109.47129 * 305.00070 * 7 5 4 35 35 H 1.09001 * 109.47165 * 185.00121 * 7 5 4 36 36 H 1.08995 * 109.47070 * 60.00205 * 8 7 5 37 37 H 1.09001 * 109.47018 * 299.99819 * 8 7 5 38 38 H 1.08998 * 109.46505 * 54.99758 * 9 8 7 39 39 H 1.09002 * 109.47153 * 180.02562 * 10 9 8 40 40 H 1.09001 * 109.46832 * 60.00321 * 10 9 8 41 41 H 1.09004 * 109.47261 * 300.00303 * 10 9 8 42 42 H 1.09002 * 109.47103 * 179.97438 * 11 9 8 43 43 H 1.09001 * 109.47066 * 299.99881 * 11 9 8 44 44 H 1.08996 * 109.47747 * 59.99547 * 11 9 8 45 45 H 0.96995 * 120.00038 * 359.97438 * 14 12 5 46 46 H 1.09005 * 109.46803 * 299.98947 * 15 14 12 47 47 H 1.08991 * 109.47724 * 59.99558 * 15 14 12 48 48 H 1.09009 * 111.00227 * 324.20009 * 18 16 15 49 49 H 1.08997 * 111.00869 * 88.01978 * 18 16 15 50 50 H 1.09001 * 110.36784 * 155.84634 * 19 18 16 51 51 H 1.08999 * 110.36400 * 278.16628 * 19 18 16 52 52 H 0.97004 * 119.99558 * 179.97438 * 24 23 21 53 53 H 1.09003 * 110.05980 * 241.87242 * 29 20 19 54 54 H 1.09002 * 109.85413 * 120.61205 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 1 4.0091 -2.1949 0.0010 7 6 4.1554 -0.4458 1.2503 8 6 3.7502 -1.2357 2.4964 9 6 4.2603 -0.5145 3.7457 10 6 3.7498 -1.2354 4.9949 11 6 5.7902 -0.5150 3.7459 12 6 4.1487 -0.4571 -1.2294 13 8 3.4205 0.3043 -1.8302 14 7 5.4075 -0.6682 -1.6621 15 6 5.8964 0.0227 -2.8579 16 6 7.3443 -0.3909 -3.1296 17 1 7.9637 -0.2225 -2.2486 18 6 7.9128 0.3734 -4.3543 19 6 9.0014 -0.6082 -4.8555 20 7 8.4273 -1.9493 -4.6424 21 6 8.7783 -3.0850 -5.3222 22 1 8.2969 -4.0236 -5.0907 23 6 9.7531 -3.0299 -6.3090 24 7 10.3395 -1.8859 -6.5916 25 14 10.2325 -4.5792 -7.2359 26 1 9.4322 -5.7245 -6.7329 27 1 9.9703 -4.3901 -8.6852 28 1 11.6765 -4.8548 -7.0258 29 6 7.4164 -1.8669 -3.5740 30 1 -0.3633 0.0001 1.0276 31 1 -0.3633 0.8900 -0.5139 32 1 -0.3633 -0.8899 -0.5139 33 1 1.6958 -2.0073 0.0005 34 1 3.7209 0.5528 1.2958 35 1 5.2418 -0.3676 1.2071 36 1 4.1848 -2.2342 2.4508 37 1 2.6638 -1.3138 2.5396 38 1 3.8973 0.5133 3.7454 39 1 4.1128 -0.7214 5.8849 40 1 4.1128 -2.2632 4.9950 41 1 2.6598 -1.2350 4.9947 42 1 6.1536 -0.0008 4.6356 43 1 6.1532 -1.5428 3.7460 44 1 6.1539 -0.0014 2.8559 45 1 5.9900 -1.2768 -1.1814 46 1 5.2757 -0.2468 -3.7125 47 1 5.8494 1.1000 -2.7000 48 1 7.1439 0.5241 -5.1122 49 1 8.3524 1.3239 -4.0522 50 1 9.2010 -0.4449 -5.9145 51 1 9.9155 -0.4901 -4.2737 52 1 11.0209 -1.8475 -7.2809 53 1 7.7104 -2.4935 -2.7319 54 1 6.4470 -2.1868 -3.9561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714650900.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:52:08 Heat of formation + Delta-G solvation = -94.355373 kcal Electronic energy + Delta-G solvation = -30518.473406 eV Core-core repulsion = 26489.138253 eV Total energy + Delta-G solvation = -4029.335153 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57592 -39.94893 -39.04813 -37.88336 -36.01912 -35.62029 -34.30012 -32.70722 -31.57596 -30.14513 -29.95806 -27.97245 -27.87042 -26.89823 -25.03585 -23.42940 -22.39846 -21.89788 -21.28900 -20.74842 -20.50524 -18.88923 -18.42790 -18.10102 -17.11629 -17.03434 -16.65378 -16.22207 -16.08907 -15.91919 -15.69989 -15.50064 -15.00027 -14.91538 -14.51190 -14.34273 -14.27303 -14.10312 -13.67083 -13.55115 -13.39326 -13.21951 -13.16064 -13.04466 -12.96875 -12.83307 -12.76375 -12.69709 -12.52790 -12.13606 -11.97672 -11.89499 -11.82506 -11.63841 -11.58619 -11.45854 -11.40993 -11.36959 -11.04893 -10.74956 -10.52646 -10.06124 -9.85255 -8.87904 -7.77158 -5.21300 1.46847 1.47856 1.58069 1.63751 1.81768 2.19801 2.49464 2.51765 3.32794 3.61159 3.68394 3.78416 3.87580 3.94210 3.98637 4.05230 4.07953 4.12128 4.19214 4.33992 4.44593 4.50757 4.54370 4.63441 4.68037 4.70338 4.71585 4.81098 4.85220 4.86622 4.91108 4.93565 5.02870 5.05504 5.09214 5.11177 5.11423 5.21253 5.30186 5.35783 5.39889 5.46075 5.49409 5.50365 5.54078 5.60064 5.64812 5.82473 6.31669 6.60672 6.70609 7.11250 7.31211 7.52693 7.79086 8.42998 9.25171 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.002298 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.076558 B =12182.251638 C =13014.991186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.504 3.496 3 O -0.570 6.570 4 N -0.709 5.709 5 C 0.138 3.862 6 H 0.146 0.854 7 C -0.126 4.126 8 C -0.099 4.099 9 C -0.099 4.099 10 C -0.143 4.143 11 C -0.150 4.150 12 C 0.492 3.508 13 O -0.563 6.563 14 N -0.717 5.717 15 C 0.149 3.851 16 C -0.092 4.092 17 H 0.096 0.904 18 C -0.125 4.125 19 C 0.153 3.847 20 N -0.629 5.629 21 C -0.236 4.236 22 H 0.082 0.918 23 C -0.071 4.071 24 N -0.951 5.951 25 Si 0.980 3.020 26 H -0.265 1.265 27 H -0.293 1.293 28 H -0.292 1.292 29 C 0.140 3.860 30 H 0.112 0.888 31 H 0.078 0.922 32 H 0.103 0.897 33 H 0.422 0.578 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.050 0.950 45 H 0.413 0.587 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.086 0.914 50 H 0.070 0.930 51 H -0.009 1.009 52 H 0.246 0.754 53 H 0.034 0.966 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.848 -1.272 23.301 29.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.293 3.707 3 O -0.448 6.448 4 N -0.364 5.364 5 C 0.028 3.972 6 H 0.164 0.836 7 C -0.164 4.164 8 C -0.136 4.136 9 C -0.117 4.117 10 C -0.201 4.201 11 C -0.207 4.207 12 C 0.277 3.723 13 O -0.440 6.440 14 N -0.371 5.371 15 C 0.024 3.976 16 C -0.112 4.112 17 H 0.114 0.886 18 C -0.164 4.164 19 C 0.028 3.972 20 N -0.355 5.355 21 C -0.365 4.365 22 H 0.100 0.900 23 C -0.263 4.263 24 N -0.601 5.601 25 Si 0.809 3.191 26 H -0.189 1.189 27 H -0.221 1.221 28 H -0.219 1.219 29 C 0.015 3.985 30 H 0.130 0.870 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.259 0.741 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.069 0.931 45 H 0.250 0.750 46 H 0.066 0.934 47 H 0.080 0.920 48 H 0.077 0.923 49 H 0.104 0.896 50 H 0.088 0.912 51 H 0.009 0.991 52 H 0.056 0.944 53 H 0.052 0.948 54 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -17.849 -0.062 22.724 28.896 hybrid contribution 0.791 -0.934 -0.853 1.492 sum -17.058 -0.996 21.870 27.754 Atomic orbital electron populations 1.21858 0.89151 1.05444 1.05883 1.21380 0.91844 0.83315 0.74194 1.90700 1.71541 1.33258 1.49294 1.45643 1.05163 1.09509 1.76099 1.20988 0.82447 1.02158 0.91578 0.83606 1.21912 1.01556 1.00138 0.92825 1.21537 1.01175 0.99114 0.91787 1.21098 0.96116 0.99137 0.95376 1.21803 1.00947 1.00682 0.96631 1.21901 0.95058 1.02319 1.01461 1.21652 0.81668 0.82243 0.86699 1.90730 1.57064 1.37438 1.58813 1.45934 1.14110 1.47728 1.29293 1.21071 0.92931 0.96421 0.87174 1.22267 0.94933 0.95003 0.98947 0.88569 1.22852 0.98557 0.98386 0.96576 1.21705 0.91805 0.82984 1.00672 1.44916 1.43998 1.05717 1.40901 1.19504 1.16316 0.87902 1.12738 0.89997 1.25659 0.99466 1.00319 1.00880 1.70073 1.29909 1.24897 1.35200 0.84975 0.77404 0.78943 0.77810 1.18916 1.22052 1.21916 1.21536 0.91511 0.94982 0.90456 0.86956 0.90334 0.87857 0.74054 0.92494 0.90123 0.89896 0.91641 0.93085 0.92851 0.91872 0.92596 0.92957 0.91682 0.93117 0.75037 0.93381 0.92020 0.92251 0.89555 0.91187 0.99095 0.94407 0.94763 0.96045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 10.30 71.23 0.73 -1.31 16 2 C 0.50 10.90 6.70 87.66 0.59 11.49 16 3 O -0.57 -18.82 12.96 19.42 0.25 -18.57 16 4 N -0.71 -10.71 4.65 -446.11 -2.07 -12.79 16 5 C 0.14 2.30 3.01 44.25 0.13 2.44 16 6 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 7 C -0.13 -2.11 4.30 30.59 0.13 -1.97 16 8 C -0.10 -1.12 4.57 30.60 0.14 -0.98 16 9 C -0.10 -1.25 2.92 -10.79 -0.03 -1.29 16 10 C -0.14 -1.45 9.19 71.98 0.66 -0.79 16 11 C -0.15 -1.89 8.95 71.98 0.64 -1.24 16 12 C 0.49 13.12 6.82 87.66 0.60 13.72 16 13 O -0.56 -20.87 13.68 19.42 0.27 -20.60 16 14 N -0.72 -17.32 5.43 -463.04 -2.51 -19.83 16 15 C 0.15 4.39 5.00 86.38 0.43 4.82 16 16 C -0.09 -2.95 2.98 -9.61 -0.03 -2.97 16 17 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 18 C -0.12 -4.63 6.54 31.99 0.21 -4.42 16 19 C 0.15 7.58 5.89 86.86 0.51 8.09 16 20 N -0.63 -32.18 3.40 -691.23 -2.35 -34.53 16 21 C -0.24 -13.15 10.28 84.03 0.86 -12.29 16 22 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 23 C -0.07 -4.04 5.49 84.86 0.47 -3.57 16 24 N -0.95 -57.07 10.09 21.65 0.22 -56.86 16 25 Si 0.98 45.61 29.55 68.60 2.03 47.63 16 26 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 27 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 28 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 29 C 0.14 5.46 6.67 86.67 0.58 6.03 16 30 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.42 2.95 8.83 -92.70 -0.82 2.14 16 34 H 0.06 1.42 6.04 -2.39 -0.01 1.41 16 35 H 0.08 1.27 6.56 -2.39 -0.02 1.25 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.64 16 37 H 0.06 0.72 7.75 -2.39 -0.02 0.70 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.05 0.71 6.56 -2.39 -0.02 0.70 16 45 H 0.41 7.54 8.40 -92.71 -0.78 6.77 16 46 H 0.05 1.63 8.00 -2.38 -0.02 1.61 16 47 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 48 H 0.06 2.25 8.05 -2.38 -0.02 2.23 16 49 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 50 H 0.07 3.99 5.87 -2.39 -0.01 3.98 16 51 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 52 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 53 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.02 0.86 7.73 -2.39 -0.02 0.84 16 Total: -1.00 -82.26 420.88 1.73 -80.53 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: -0.72 Total: 19.26 kcal Atomic # 6 Polarization: 9.12 SS G_CDS: 6.63 Total: 15.75 kcal Atomic # 7 Polarization: -117.28 SS G_CDS: -6.72 Total: -124.00 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: 0.52 Total: -39.17 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.63 kcal Total: -82.26 1.73 -80.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714650900.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.826 kcal (2) G-P(sol) polarization free energy of solvation -82.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds