Wall clock time and date at job start Sat Apr 11 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47313 * 2 1 4 4 C 1.52998 * 109.47193 * 239.99992 * 2 1 3 5 5 C 1.53000 * 109.46992 * 120.00348 * 2 1 3 6 6 C 1.50697 * 109.47259 * 59.99730 * 5 2 1 7 7 O 1.21274 * 119.99844 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99802 * 180.02562 * 6 5 2 9 9 C 1.46500 * 120.00067 * 180.02562 * 8 6 5 10 10 H 1.09010 * 110.53493 * 327.60855 * 9 8 6 11 11 C 1.54884 * 110.48926 * 90.22144 * 9 8 6 12 12 C 1.54894 * 102.75174 * 156.62430 * 11 9 8 13 13 C 1.54275 * 104.19042 * 322.05895 * 12 11 9 14 14 C 1.53873 * 106.59757 * 23.60996 * 13 12 11 15 15 H 1.08998 * 110.02850 * 240.66173 * 14 13 12 16 16 C 1.53000 * 110.03240 * 119.28576 * 14 13 12 17 17 N 1.46902 * 109.47277 * 66.44940 * 16 14 13 18 18 C 1.46902 * 111.00192 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.46924 * 180.02562 * 18 17 16 20 20 O 1.21290 * 120.00285 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99541 * 180.02562 * 19 18 17 22 22 C 1.37101 * 119.99649 * 179.97438 * 21 19 18 23 23 H 1.08003 * 120.00266 * 359.97438 * 22 21 19 24 24 C 1.38949 * 120.00025 * 179.97438 * 22 21 19 25 25 N 1.31406 * 120.00069 * 179.97438 * 24 22 21 26 26 Si 1.86798 * 119.99709 * 0.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99702 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99882 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99875 * 26 24 22 30 30 H 1.09005 * 109.46929 * 299.99769 * 1 2 3 31 31 H 1.08998 * 109.46944 * 59.99589 * 1 2 3 32 32 H 1.09000 * 109.47421 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47294 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47451 * 300.00101 * 3 2 1 35 35 H 1.09005 * 109.46934 * 60.00234 * 3 2 1 36 36 H 1.09000 * 109.47123 * 300.00411 * 4 2 1 37 37 H 1.09007 * 109.46940 * 60.00139 * 4 2 1 38 38 H 1.08999 * 109.47427 * 179.97438 * 4 2 1 39 39 H 1.09005 * 109.47188 * 299.99724 * 5 2 1 40 40 H 1.09004 * 109.47062 * 180.02562 * 5 2 1 41 41 H 0.97004 * 120.00359 * 359.97438 * 8 6 5 42 42 H 1.08997 * 110.75596 * 38.30964 * 11 9 8 43 43 H 1.09000 * 110.91422 * 275.01002 * 11 9 8 44 44 H 1.08991 * 110.49013 * 203.38229 * 12 11 9 45 45 H 1.08998 * 110.59704 * 80.78476 * 12 11 9 46 46 H 1.08999 * 110.02931 * 264.32207 * 13 12 11 47 47 H 1.09000 * 110.06805 * 142.91425 * 13 12 11 48 48 H 1.09000 * 109.47263 * 306.45210 * 16 14 13 49 49 H 1.08999 * 109.47133 * 186.44756 * 16 14 13 50 50 H 1.00905 * 110.99940 * 56.04213 * 17 16 14 51 51 H 1.08996 * 109.46937 * 60.00369 * 18 17 16 52 52 H 1.08999 * 109.46810 * 300.00207 * 18 17 16 53 53 H 0.96993 * 120.00289 * 359.97438 * 21 19 18 54 54 H 0.97008 * 120.00016 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 6 1.5376 -2.1421 1.2492 7 8 0.8407 -2.5388 0.3394 8 7 1.8628 -2.9718 2.2602 9 6 1.3749 -4.3532 2.2600 10 1 0.3949 -4.4125 1.7862 11 6 2.3822 -5.2838 1.5401 12 6 2.0549 -6.6729 2.1423 13 6 1.7452 -6.3790 3.6248 14 6 1.3128 -4.9042 3.6995 15 1 1.9942 -4.3475 4.3429 16 6 -0.1157 -4.8034 4.2382 17 7 -0.1441 -5.2501 5.6374 18 6 -1.5031 -5.1675 6.1889 19 6 -1.4925 -5.6321 7.6225 20 8 -0.4550 -5.9965 8.1343 21 7 -2.6361 -5.6435 8.3356 22 6 -2.6265 -6.0666 9.6397 23 1 -1.7027 -6.3912 10.0954 24 6 -3.8054 -6.0779 10.3751 25 7 -3.7963 -6.4839 11.6248 26 14 -5.4033 -5.5173 9.5867 27 1 -5.5756 -4.0579 9.8007 28 1 -6.5415 -6.2456 10.2027 29 1 -5.3634 -5.8026 8.1299 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6768 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6766 -1.7489 -1.2493 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 1.6767 -0.2075 2.1393 40 1 3.1300 -0.7209 1.2494 41 1 2.4205 -2.6546 2.9878 42 1 3.4076 -4.9949 1.7705 43 1 2.2141 -5.2803 0.4632 44 1 2.9141 -7.3379 2.0566 45 1 1.1855 -7.1089 1.6502 46 1 2.6370 -6.5379 4.2310 47 1 0.9376 -7.0230 3.9729 48 1 -0.7742 -5.4349 3.6418 49 1 -0.4537 -3.7688 4.1801 50 1 0.5071 -4.7219 6.1988 51 1 -2.1709 -5.8018 5.6060 52 1 -1.8512 -4.1356 6.1443 53 1 -3.4658 -5.3524 7.9263 54 1 -4.6193 -6.4915 12.1383 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715546415.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:39 Heat of formation + Delta-G solvation = -118.716696 kcal Electronic energy + Delta-G solvation = -29801.424387 eV Core-core repulsion = 25771.032849 eV Total energy + Delta-G solvation = -4030.391539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31052 -40.33817 -39.53921 -37.33918 -36.46832 -35.78428 -34.63155 -33.74964 -31.22920 -30.05125 -28.26233 -28.07689 -28.01165 -27.71730 -25.87721 -23.94173 -22.09752 -21.52643 -21.26651 -20.84417 -20.26066 -19.65717 -18.01244 -17.66439 -17.49837 -16.96713 -16.63320 -16.29385 -16.16691 -15.62866 -15.43380 -15.29567 -15.26582 -15.15512 -14.97148 -14.74124 -14.43915 -14.17297 -13.97112 -13.79094 -13.34903 -13.17967 -13.13460 -12.91987 -12.87796 -12.78617 -12.63528 -12.42741 -12.36586 -12.06058 -11.99063 -11.96900 -11.91139 -11.75109 -11.65890 -11.58601 -11.51701 -11.50641 -11.30251 -10.44531 -10.38122 -10.25374 -9.90169 -9.31802 -8.41808 -6.02551 1.30092 1.34584 1.43852 1.74615 1.95019 2.22251 2.28366 2.70661 3.14653 3.33315 3.67352 3.74058 3.79906 3.83295 3.96708 3.97246 4.14142 4.30092 4.31758 4.36314 4.47311 4.51139 4.55436 4.58207 4.62539 4.63620 4.68119 4.70760 4.75203 4.83887 4.86880 4.88366 4.92531 5.00689 5.10386 5.11202 5.16401 5.19829 5.25292 5.31775 5.39948 5.42787 5.49246 5.52234 5.55475 5.59976 5.77795 5.89841 6.03495 6.40087 6.59192 6.66283 6.87517 7.39261 7.39973 7.95488 8.75709 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013489 B = 0.002043 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.199281 B =13702.193698 C =15095.199997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.053 4.053 3 C -0.139 4.139 4 C -0.150 4.150 5 C -0.130 4.130 6 C 0.510 3.490 7 O -0.565 6.565 8 N -0.717 5.717 9 C 0.151 3.849 10 H 0.079 0.921 11 C -0.125 4.125 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.084 4.084 15 H 0.086 0.914 16 C 0.071 3.929 17 N -0.680 5.680 18 C 0.062 3.938 19 C 0.449 3.551 20 O -0.612 6.612 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.056 0.944 24 C -0.016 4.016 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.257 1.257 28 H -0.275 1.275 29 H -0.233 1.233 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.412 0.588 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.061 0.939 48 H 0.074 0.926 49 H 0.035 0.965 50 H 0.345 0.655 51 H 0.109 0.891 52 H 0.074 0.926 53 H 0.389 0.611 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.122 14.389 -27.657 33.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.053 4.053 3 C -0.196 4.196 4 C -0.207 4.207 5 C -0.170 4.170 6 C 0.298 3.702 7 O -0.444 6.444 8 N -0.369 5.369 9 C 0.046 3.954 10 H 0.097 0.903 11 C -0.164 4.164 12 C -0.158 4.158 13 C -0.146 4.146 14 C -0.104 4.104 15 H 0.104 0.896 16 C -0.058 4.058 17 N -0.312 5.312 18 C -0.071 4.071 19 C 0.237 3.763 20 O -0.496 6.496 21 N -0.234 5.234 22 C -0.457 4.457 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.181 1.181 28 H -0.200 1.200 29 H -0.156 1.156 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.126 0.874 40 H 0.131 0.869 41 H 0.249 0.751 42 H 0.096 0.904 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.080 0.920 48 H 0.092 0.908 49 H 0.053 0.947 50 H 0.164 0.836 51 H 0.127 0.873 52 H 0.092 0.908 53 H 0.225 0.775 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.161 13.161 -27.919 32.821 hybrid contribution -0.904 0.911 0.850 1.539 sum 10.257 14.072 -27.069 32.186 Atomic orbital electron populations 1.22064 0.95232 1.02545 1.01039 1.20285 0.95473 0.95501 0.94060 1.21862 1.01448 0.94066 1.02219 1.22045 1.00389 1.01504 0.96740 1.21840 1.03545 0.90855 1.00725 1.21163 0.79368 0.88526 0.81127 1.90586 1.39195 1.78112 1.36541 1.46101 1.53556 1.11591 1.25605 1.21692 0.98005 0.80726 0.95011 0.90330 1.22770 0.99390 0.94826 0.99367 1.22315 1.01711 0.96676 0.95148 1.22012 1.01370 0.94914 0.96341 1.21901 0.96161 0.97426 0.94879 0.89602 1.22083 0.97268 0.98257 0.88148 1.60037 1.05913 1.62068 1.03188 1.21613 0.93179 1.01517 0.90762 1.20960 0.83346 0.82537 0.89437 1.90540 1.33103 1.52763 1.73228 1.42049 1.09579 1.60389 1.11336 1.19008 0.96756 1.42414 0.87547 0.92571 1.26111 1.02544 0.96880 0.95900 1.69802 1.30168 1.47433 1.10012 0.85373 0.76751 0.79405 0.80047 1.18093 1.20037 1.15620 0.93002 0.93250 0.92138 0.91653 0.92590 0.91974 0.92113 0.93304 0.92657 0.87351 0.86901 0.75147 0.90444 0.92135 0.90741 0.91719 0.91833 0.92016 0.90780 0.94654 0.83613 0.87263 0.90782 0.77538 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.18 71.98 0.59 -1.86 16 2 C -0.05 -0.67 0.77 -52.18 -0.04 -0.71 16 3 C -0.14 -1.27 8.47 71.98 0.61 -0.66 16 4 C -0.15 -2.26 8.18 71.98 0.59 -1.67 16 5 C -0.13 -1.32 4.77 29.85 0.14 -1.17 16 6 C 0.51 8.07 7.24 87.66 0.63 8.71 16 7 O -0.56 -13.09 11.00 -3.01 -0.03 -13.13 16 8 N -0.72 -9.20 5.16 -437.47 -2.26 -11.45 16 9 C 0.15 2.41 2.75 46.06 0.13 2.54 16 10 H 0.08 1.59 7.27 -2.38 -0.02 1.57 16 11 C -0.12 -1.90 6.58 31.88 0.21 -1.69 16 12 C -0.12 -1.91 6.83 31.67 0.22 -1.69 16 13 C -0.11 -2.04 6.27 31.32 0.20 -1.84 16 14 C -0.08 -1.42 2.83 -10.07 -0.03 -1.44 16 15 H 0.09 1.31 7.73 -2.39 -0.02 1.29 16 16 C 0.07 1.44 4.71 86.30 0.41 1.85 16 17 N -0.68 -18.89 5.82 -517.92 -3.02 -21.90 16 18 C 0.06 1.86 6.17 85.56 0.53 2.39 16 19 C 0.45 20.11 7.82 87.66 0.69 20.79 16 20 O -0.61 -33.54 15.78 -3.06 -0.05 -33.59 16 21 N -0.59 -27.86 5.09 -306.98 -1.56 -29.42 16 22 C -0.33 -19.21 10.16 84.04 0.85 -18.36 16 23 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 24 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 25 N -0.93 -56.28 13.96 21.66 0.30 -55.98 16 26 Si 0.96 38.83 27.74 68.60 1.90 40.74 16 27 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 28 H -0.28 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.23 -7.95 6.52 99.48 0.65 -7.30 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 1.30 5.51 -2.39 -0.01 1.28 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.06 1.24 5.51 -2.39 -0.01 1.23 16 37 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 40 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 41 H 0.41 3.25 8.37 -92.71 -0.78 2.47 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 48 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 49 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 50 H 0.35 10.08 8.43 -89.69 -0.76 9.33 16 51 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 52 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 53 H 0.39 15.20 5.76 -92.71 -0.53 14.67 16 54 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -77.26 420.91 0.25 -77.02 By element: Atomic # 1 Polarization: 44.18 SS G_CDS: -1.23 Total: 42.96 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 6.19 Total: 4.77 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -6.53 Total: -118.76 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -0.08 Total: -46.72 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.90 Total: 40.74 kcal Total: -77.26 0.25 -77.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715546415.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.702 kcal (2) G-P(sol) polarization free energy of solvation -77.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds