Wall clock time and date at job start Sat Apr 11 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47554 * 2 1 4 4 C 1.52998 * 109.47121 * 59.99727 * 3 2 1 5 5 C 1.53002 * 109.46822 * 299.99988 * 3 2 1 6 6 C 1.50691 * 109.47305 * 180.02562 * 3 2 1 7 7 O 1.21286 * 120.00328 * 359.97438 * 6 3 2 8 8 N 1.34783 * 120.00037 * 179.97438 * 6 3 2 9 9 C 1.46501 * 120.00006 * 179.97438 * 8 6 3 10 10 H 1.09002 * 110.05987 * 326.41940 * 9 8 6 11 11 C 1.53879 * 110.02917 * 87.83824 * 9 8 6 12 12 C 1.54256 * 106.59902 * 119.28221 * 11 9 8 13 13 C 1.54883 * 104.20013 * 23.61092 * 12 11 9 14 14 C 1.54266 * 110.03191 * 204.99740 * 9 8 6 15 15 H 1.09001 * 110.48881 * 335.92235 * 14 9 8 16 16 C 1.53002 * 110.48362 * 98.42912 * 14 9 8 17 17 N 1.46903 * 109.47290 * 184.99688 * 16 14 9 18 18 C 1.46892 * 111.00144 * 180.02562 * 17 16 14 19 19 C 1.50695 * 109.47369 * 180.02562 * 18 17 16 20 20 O 1.21297 * 119.99943 * 0.02562 * 19 18 17 21 21 N 1.34779 * 120.00454 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00130 * 180.02562 * 21 19 18 23 23 H 1.07998 * 120.00049 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99753 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00069 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99709 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.47297 * 269.99702 * 26 24 22 28 28 H 1.48503 * 109.47261 * 149.99882 * 26 24 22 29 29 H 1.48500 * 109.47454 * 29.99875 * 26 24 22 30 30 H 1.08997 * 109.47045 * 300.00371 * 1 2 3 31 31 H 1.09004 * 109.47222 * 59.99839 * 1 2 3 32 32 H 1.09004 * 109.47407 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47522 * 239.99734 * 2 1 3 34 34 H 1.09004 * 109.47222 * 120.00161 * 2 1 3 35 35 H 1.08998 * 109.47193 * 180.02562 * 4 3 2 36 36 H 1.09006 * 109.47330 * 300.00161 * 4 3 2 37 37 H 1.08997 * 109.47324 * 60.00174 * 4 3 2 38 38 H 1.09005 * 109.47327 * 299.99987 * 5 3 2 39 39 H 1.09006 * 109.47250 * 60.00071 * 5 3 2 40 40 H 1.09003 * 109.47246 * 180.02562 * 5 3 2 41 41 H 0.96995 * 119.99813 * 0.02562 * 8 6 3 42 42 H 1.09004 * 110.02913 * 238.56815 * 11 9 8 43 43 H 1.09003 * 110.02937 * 359.97438 * 11 9 8 44 44 H 1.09007 * 110.48796 * 142.28660 * 12 11 9 45 45 H 1.09005 * 110.48783 * 264.79361 * 12 11 9 46 46 H 1.08998 * 110.76139 * 203.74382 * 13 12 11 47 47 H 1.09000 * 110.75850 * 80.36983 * 13 12 11 48 48 H 1.09009 * 109.46935 * 65.00017 * 16 14 9 49 49 H 1.08997 * 109.47209 * 305.00526 * 16 14 9 50 50 H 1.00896 * 110.99419 * 56.05109 * 17 16 14 51 51 H 1.08998 * 109.47455 * 60.00178 * 18 17 16 52 52 H 1.09007 * 109.47046 * 300.00638 * 18 17 16 53 53 H 0.97006 * 119.99547 * 0.02562 * 21 19 18 54 54 H 0.97001 * 120.00308 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2493 6 6 3.5470 1.4424 -0.0006 7 8 4.1534 0.3920 -0.0006 8 7 4.2210 2.6096 -0.0013 9 6 5.6860 2.6095 -0.0013 10 1 6.0598 1.7568 0.5654 11 6 6.2130 2.5542 -1.4460 12 6 7.0432 3.8363 -1.6616 13 6 7.4697 4.2574 -0.2334 14 6 6.2145 3.9234 0.6104 15 1 5.4694 4.7137 0.5189 16 6 6.5953 3.7157 2.0777 17 7 6.9814 5.0032 2.6704 18 6 7.3550 4.8421 4.0819 19 6 7.7434 6.1807 4.6547 20 8 7.7117 7.1716 3.9559 21 7 8.1251 6.2770 5.9437 22 6 8.4779 7.4950 6.4650 23 1 8.4505 8.3772 5.8426 24 6 8.8719 7.5942 7.7937 25 7 8.9058 6.5207 8.5509 26 14 9.3534 9.2535 8.5037 27 1 10.8105 9.4690 8.3145 28 1 9.0328 9.2836 9.9534 29 1 8.5997 10.3273 7.8078 30 1 -0.3633 0.5139 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.8931 3.1915 1.2490 36 1 0.4400 2.1638 1.2492 37 1 1.8933 1.6500 2.1392 38 1 1.8934 1.6498 -2.1393 39 1 0.4400 2.1638 -1.2493 40 1 1.8938 3.1912 -1.2496 41 1 3.7360 3.4496 -0.0009 42 1 6.8425 1.6746 -1.5803 43 1 5.3786 2.5270 -2.1470 44 1 7.9195 3.6248 -2.2745 45 1 6.4336 4.6123 -2.1244 46 1 7.6885 5.3245 -0.1944 47 1 8.3270 3.6737 0.1017 48 1 7.4329 3.0209 2.1408 49 1 5.7427 3.3070 2.6200 50 1 6.2444 5.6844 2.5666 51 1 8.1979 4.1553 4.1586 52 1 6.5078 4.4410 4.6384 53 1 8.1501 5.4846 6.5026 54 1 8.6561 5.6590 8.1821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715554166.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:49 Heat of formation + Delta-G solvation = -127.770586 kcal Electronic energy + Delta-G solvation = -30009.939604 eV Core-core repulsion = 25979.155459 eV Total energy + Delta-G solvation = -4030.784145 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52643 -40.36701 -39.51501 -37.29050 -36.75028 -36.01561 -34.68075 -33.15692 -31.29955 -31.12566 -28.54117 -28.29910 -28.01598 -26.07239 -25.72457 -24.10279 -22.82712 -21.75538 -21.41652 -21.00197 -19.98369 -19.76107 -18.27556 -17.90924 -17.54579 -17.00964 -16.74295 -16.35838 -16.07862 -15.94679 -15.57745 -15.31735 -15.21514 -15.07411 -14.99432 -14.88959 -14.57605 -14.18534 -13.72759 -13.54784 -13.37420 -13.32362 -13.17984 -12.96215 -12.81523 -12.80594 -12.74883 -12.50557 -12.36482 -12.16364 -11.97621 -11.93861 -11.89609 -11.78850 -11.68964 -11.56894 -11.55291 -11.52694 -11.45606 -10.65407 -10.42478 -10.11808 -10.07060 -9.39782 -8.93471 -6.07514 1.51990 1.54647 1.62555 1.82082 1.99753 2.16454 2.39694 2.76263 3.15986 3.29923 3.56501 3.62254 3.69270 3.76056 3.83388 3.87808 4.08762 4.20631 4.22278 4.28495 4.39226 4.42179 4.43917 4.51895 4.52777 4.54052 4.56003 4.66390 4.68922 4.73539 4.77240 4.84079 4.87956 4.91050 5.04841 5.07388 5.09654 5.10116 5.11865 5.18845 5.23796 5.34567 5.39291 5.45989 5.50962 5.58265 5.60191 5.89746 5.96621 6.33271 6.53751 6.56870 6.73459 7.24353 7.43318 7.90884 8.54146 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.002010 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.648927 B =13923.628789 C =15130.038047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.078 4.078 4 C -0.142 4.142 5 C -0.139 4.139 6 C 0.518 3.482 7 O -0.585 6.585 8 N -0.710 5.710 9 C 0.149 3.851 10 H 0.071 0.929 11 C -0.126 4.126 12 C -0.117 4.117 13 C -0.106 4.106 14 C -0.082 4.082 15 H 0.091 0.909 16 C 0.071 3.929 17 N -0.673 5.673 18 C 0.064 3.936 19 C 0.443 3.557 20 O -0.615 6.615 21 N -0.588 5.588 22 C -0.409 4.409 23 H 0.074 0.926 24 C -0.044 4.044 25 N -0.918 5.918 26 Si 1.136 2.864 27 H -0.271 1.271 28 H -0.273 1.273 29 H -0.276 1.276 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.411 0.589 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.072 0.928 49 H 0.032 0.968 50 H 0.346 0.654 51 H 0.101 0.899 52 H 0.064 0.936 53 H 0.384 0.616 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.542 -11.459 -20.479 28.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.081 4.081 4 C -0.199 4.199 5 C -0.197 4.197 6 C 0.306 3.694 7 O -0.465 6.465 8 N -0.362 5.362 9 C 0.043 3.957 10 H 0.089 0.911 11 C -0.165 4.165 12 C -0.155 4.155 13 C -0.144 4.144 14 C -0.102 4.102 15 H 0.109 0.891 16 C -0.058 4.058 17 N -0.306 5.306 18 C -0.068 4.068 19 C 0.231 3.769 20 O -0.500 6.500 21 N -0.227 5.227 22 C -0.538 4.538 23 H 0.092 0.908 24 C -0.242 4.242 25 N -0.557 5.557 26 Si 0.956 3.044 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.201 1.201 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.248 0.752 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.091 0.909 49 H 0.050 0.950 50 H 0.164 0.836 51 H 0.119 0.881 52 H 0.082 0.918 53 H 0.218 0.782 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.959 -10.809 -19.781 27.054 hybrid contribution -1.157 -1.305 -0.457 1.802 sum -16.116 -12.114 -20.238 28.566 Atomic orbital electron populations 1.21894 0.93507 1.02368 1.03015 1.21322 0.97076 0.93748 1.01625 1.20842 0.89242 0.98614 0.99448 1.21944 1.03233 1.00071 0.94691 1.21932 1.03180 1.00113 0.94447 1.21171 0.90977 0.83182 0.74104 1.90675 1.71400 1.32986 1.51407 1.46123 1.06679 1.08922 1.74474 1.21534 0.79685 0.97832 0.96614 0.91072 1.22475 0.99884 0.98691 0.95437 1.22342 0.99765 0.96648 0.96725 1.22359 0.96332 1.01522 0.94146 1.22127 0.98624 0.96254 0.93164 0.89087 1.22046 0.99118 0.90362 0.94273 1.60038 1.46692 1.09971 1.13880 1.21527 1.01753 0.93528 0.90000 1.20820 0.82412 0.91778 0.81912 1.90495 1.59152 1.40353 1.60049 1.42015 1.60532 1.09709 1.10420 1.20551 1.47199 0.87853 0.98219 0.90776 1.27855 0.95140 1.08645 0.92576 1.70941 1.46646 0.99730 1.38371 0.82587 0.77246 0.68897 0.75659 1.19661 1.19777 1.20108 0.91521 0.91094 0.92442 0.92843 0.93357 0.91098 0.89221 0.93458 0.92817 0.89290 0.90909 0.75169 0.91959 0.91229 0.90944 0.90642 0.91494 0.91884 0.90943 0.95015 0.83568 0.88083 0.91809 0.78201 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.21 71.98 0.66 -0.82 16 2 C -0.10 -1.54 4.28 30.59 0.13 -1.41 16 3 C -0.08 -1.06 0.64 -52.93 -0.03 -1.09 16 4 C -0.14 -1.55 8.02 71.98 0.58 -0.97 16 5 C -0.14 -1.23 8.02 71.98 0.58 -0.65 16 6 C 0.52 10.28 6.48 87.65 0.57 10.85 16 7 O -0.58 -16.90 15.64 -3.05 -0.05 -16.95 16 8 N -0.71 -11.20 4.77 -439.08 -2.09 -13.29 16 9 C 0.15 2.73 2.82 45.72 0.13 2.86 16 10 H 0.07 1.65 7.26 -2.39 -0.02 1.64 16 11 C -0.13 -2.14 6.59 31.32 0.21 -1.93 16 12 C -0.12 -1.81 6.83 31.66 0.22 -1.59 16 13 C -0.11 -2.05 6.22 31.88 0.20 -1.85 16 14 C -0.08 -1.52 2.73 -9.72 -0.03 -1.54 16 15 H 0.09 1.50 7.74 -2.39 -0.02 1.49 16 16 C 0.07 1.61 4.97 86.30 0.43 2.04 16 17 N -0.67 -20.14 6.01 -517.93 -3.11 -23.26 16 18 C 0.06 2.17 6.17 85.56 0.53 2.70 16 19 C 0.44 20.93 7.82 87.66 0.69 21.61 16 20 O -0.61 -33.85 15.78 -3.08 -0.05 -33.90 16 21 N -0.59 -29.95 5.28 -306.98 -1.62 -31.57 16 22 C -0.41 -23.42 9.68 84.04 0.81 -22.61 16 23 H 0.07 4.55 7.16 -2.91 -0.02 4.53 16 24 C -0.04 -2.40 5.50 84.93 0.47 -1.94 16 25 N -0.92 -51.43 13.68 21.66 0.30 -51.14 16 26 Si 1.14 48.59 29.92 68.60 2.05 50.64 16 27 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 28 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 29 H -0.28 -11.33 7.11 99.48 0.71 -10.62 16 30 H 0.07 0.56 6.43 -2.39 -0.02 0.54 16 31 H 0.07 0.52 6.43 -2.38 -0.02 0.50 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.05 0.96 8.10 -2.39 -0.02 0.95 16 34 H 0.05 0.93 8.10 -2.38 -0.02 0.91 16 35 H 0.07 0.62 7.57 -2.39 -0.02 0.61 16 36 H 0.09 0.68 6.43 -2.38 -0.02 0.66 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 39 H 0.09 0.51 6.43 -2.38 -0.02 0.50 16 40 H 0.07 0.47 7.56 -2.39 -0.02 0.45 16 41 H 0.41 4.44 7.19 -92.71 -0.67 3.77 16 42 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.07 1.14 7.92 -2.39 -0.02 1.12 16 44 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 45 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.06 1.32 7.97 -2.39 -0.02 1.31 16 48 H 0.07 1.68 8.02 -2.38 -0.02 1.66 16 49 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.35 10.64 8.43 -89.70 -0.76 9.88 16 51 H 0.10 3.13 8.14 -2.39 -0.02 3.11 16 52 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 53 H 0.38 18.03 6.73 -92.70 -0.62 17.40 16 54 H 0.26 14.06 6.78 -92.71 -0.63 13.43 16 Total: -1.00 -74.37 422.02 0.55 -73.82 By element: Atomic # 1 Polarization: 42.97 SS G_CDS: -1.00 Total: 41.98 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: 6.13 Total: 3.66 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -6.53 Total: -119.25 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -0.10 Total: -50.84 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Total: -74.37 0.55 -73.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715554166.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.951 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds