Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46947 * 2 1 4 4 C 1.52994 * 109.47161 * 60.00140 * 3 2 1 5 5 C 1.52995 * 109.46935 * 299.99765 * 3 2 1 6 6 C 1.50701 * 109.46813 * 180.02562 * 3 2 1 7 7 O 1.21286 * 120.00236 * 0.02562 * 6 3 2 8 8 N 1.34778 * 119.99748 * 180.02562 * 6 3 2 9 9 C 1.46507 * 119.99658 * 179.97438 * 8 6 3 10 10 H 1.09004 * 110.01588 * 33.60930 * 9 8 6 11 11 C 1.54270 * 110.07158 * 272.19069 * 9 8 6 12 12 C 1.54892 * 104.19284 * 264.30296 * 11 9 8 13 13 C 1.54885 * 102.75252 * 322.06116 * 12 11 9 14 14 C 1.53873 * 110.03004 * 155.00006 * 9 8 6 15 15 H 1.09005 * 110.03457 * 0.02562 * 14 9 8 16 16 C 1.52993 * 110.03486 * 238.61835 * 14 9 8 17 17 N 1.46901 * 109.47323 * 174.99822 * 16 14 9 18 18 C 1.46904 * 110.99695 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.46676 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 17 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47118 * 269.99889 * 26 24 22 28 28 H 1.48499 * 109.47134 * 30.00409 * 26 24 22 29 29 H 1.48498 * 109.47011 * 150.00030 * 26 24 22 30 30 H 1.08995 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46601 * 299.99950 * 1 2 3 32 32 H 1.08997 * 109.46961 * 60.00094 * 1 2 3 33 33 H 1.08997 * 109.47093 * 239.99904 * 2 1 3 34 34 H 1.08996 * 109.47290 * 120.00331 * 2 1 3 35 35 H 1.08998 * 109.47273 * 179.97438 * 4 3 2 36 36 H 1.09004 * 109.47120 * 300.00044 * 4 3 2 37 37 H 1.09011 * 109.47247 * 59.99693 * 4 3 2 38 38 H 1.08997 * 109.47712 * 299.99843 * 5 3 2 39 39 H 1.09002 * 109.47291 * 60.00554 * 5 3 2 40 40 H 1.09008 * 109.46748 * 180.02562 * 5 3 2 41 41 H 0.97001 * 120.00166 * 359.97438 * 8 6 3 42 42 H 1.08994 * 110.48641 * 22.98197 * 11 9 8 43 43 H 1.08998 * 110.48286 * 145.63063 * 11 9 8 44 44 H 1.09007 * 110.75206 * 80.37777 * 12 11 9 45 45 H 1.08998 * 110.75368 * 203.74128 * 12 11 9 46 46 H 1.09000 * 110.48635 * 279.26743 * 13 12 11 47 47 H 1.08999 * 110.48953 * 156.61958 * 13 12 11 48 48 H 1.08998 * 109.47256 * 54.99880 * 16 14 9 49 49 H 1.09001 * 109.47023 * 295.00397 * 16 14 9 50 50 H 1.00902 * 110.99893 * 56.05170 * 17 16 14 51 51 H 1.08996 * 109.47230 * 60.00720 * 18 17 16 52 52 H 1.09002 * 109.47146 * 299.99952 * 18 17 16 53 53 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 54 54 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2492 5 6 1.5301 2.1637 -1.2492 6 6 3.5470 1.4425 -0.0006 7 8 4.1535 0.3921 -0.0015 8 7 4.2209 2.6097 -0.0002 9 6 5.6860 2.6097 -0.0003 10 1 6.0590 1.7569 -0.5675 11 6 6.2155 2.5537 1.4476 12 6 6.4859 4.0350 1.8106 13 6 7.0444 4.6148 0.4874 14 6 6.2130 3.9201 -0.6108 15 1 5.3788 4.5563 -0.9066 16 6 7.0957 3.6159 -1.8228 17 7 7.4942 4.8747 -2.4667 18 6 8.3452 4.6209 -3.6370 19 6 8.7335 5.9326 -4.2694 20 8 8.3405 6.9760 -3.7920 21 7 9.5185 5.9462 -5.3650 22 6 9.8713 7.1393 -5.9406 23 1 9.5207 8.0684 -5.5160 24 6 10.6801 7.1533 -7.0704 25 7 11.1064 6.0228 -7.5874 26 14 11.1615 8.7791 -7.8543 27 1 10.1519 9.1537 -8.8769 28 1 11.2232 9.8331 -6.8101 29 1 12.4922 8.6428 -8.4993 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.8937 3.1913 1.2495 36 1 0.4400 2.1637 1.2492 37 1 1.8934 1.6498 2.1393 38 1 1.8934 1.6499 -2.1392 39 1 0.4400 2.1637 -1.2493 40 1 1.8938 3.1913 -1.2494 41 1 3.7359 3.4498 0.0001 42 1 5.4635 2.1291 2.1126 43 1 7.1380 1.9750 1.4943 44 1 5.5612 4.5385 2.0931 45 1 7.2260 4.1085 2.6075 46 1 8.1008 4.3689 0.3790 47 1 6.8974 5.6942 0.4517 48 1 6.5393 3.0046 -2.5333 49 1 7.9854 3.0763 -1.4981 50 1 7.9557 5.4864 -1.8103 51 1 7.7977 4.0165 -4.3602 52 1 9.2435 4.0886 -3.3244 53 1 9.8331 5.1117 -5.7465 54 1 10.8567 5.1786 -7.1800 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715554167.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -128.080631 kcal Electronic energy + Delta-G solvation = -29934.009975 eV Core-core repulsion = 25903.212385 eV Total energy + Delta-G solvation = -4030.797590 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.54159 -40.39042 -39.58309 -37.28989 -36.74494 -36.02968 -34.55107 -33.16008 -31.27029 -31.11414 -28.68346 -28.28329 -28.00350 -26.09017 -25.72173 -24.20753 -22.88737 -21.61574 -21.36598 -21.02348 -19.98340 -19.69320 -18.33962 -17.89770 -17.49441 -17.04047 -16.74013 -16.43724 -16.17404 -15.93170 -15.63853 -15.49926 -15.15963 -15.04341 -14.96777 -14.78436 -14.63727 -13.95638 -13.70697 -13.57146 -13.52864 -13.33775 -13.15043 -12.98867 -12.79848 -12.75727 -12.60199 -12.56310 -12.45424 -12.14966 -11.99765 -11.94035 -11.89894 -11.81323 -11.64025 -11.56302 -11.55695 -11.53426 -11.53003 -10.64486 -10.43572 -10.12259 -10.05387 -9.43847 -8.93901 -6.07968 1.51688 1.54582 1.63838 1.82082 1.99047 2.16166 2.39894 2.77676 3.15597 3.32079 3.55151 3.57060 3.66990 3.77816 3.84345 3.89135 4.08957 4.21914 4.22652 4.29170 4.35188 4.42305 4.43786 4.45161 4.52007 4.54134 4.56698 4.67609 4.69738 4.75390 4.76882 4.86639 4.88660 4.92526 4.98967 5.05806 5.08670 5.10828 5.12062 5.18925 5.23515 5.27005 5.40715 5.40926 5.52190 5.57798 5.60581 5.89095 5.96115 6.31935 6.55321 6.56367 6.72821 7.25614 7.42678 7.90104 8.53683 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017325 B = 0.001883 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.808194 B =14863.365860 C =15664.335409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.100 4.100 3 C -0.078 4.078 4 C -0.139 4.139 5 C -0.142 4.142 6 C 0.518 3.482 7 O -0.586 6.586 8 N -0.708 5.708 9 C 0.148 3.852 10 H 0.070 0.930 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.121 4.121 14 C -0.084 4.084 15 H 0.090 0.910 16 C 0.070 3.930 17 N -0.677 5.677 18 C 0.063 3.937 19 C 0.442 3.558 20 O -0.615 6.615 21 N -0.587 5.587 22 C -0.410 4.410 23 H 0.074 0.926 24 C -0.044 4.044 25 N -0.917 5.917 26 Si 1.137 2.863 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.273 1.273 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.411 0.589 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.039 0.961 50 H 0.346 0.654 51 H 0.102 0.898 52 H 0.066 0.934 53 H 0.384 0.616 54 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.293 -10.361 19.923 29.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.138 4.138 3 C -0.081 4.081 4 C -0.196 4.196 5 C -0.200 4.200 6 C 0.306 3.694 7 O -0.466 6.466 8 N -0.360 5.360 9 C 0.042 3.958 10 H 0.088 0.912 11 C -0.166 4.166 12 C -0.151 4.151 13 C -0.159 4.159 14 C -0.104 4.104 15 H 0.108 0.892 16 C -0.059 4.059 17 N -0.310 5.310 18 C -0.070 4.070 19 C 0.230 3.770 20 O -0.501 6.501 21 N -0.226 5.226 22 C -0.539 4.539 23 H 0.092 0.908 24 C -0.242 4.242 25 N -0.556 5.556 26 Si 0.956 3.044 27 H -0.196 1.196 28 H -0.201 1.201 29 H -0.198 1.198 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.089 0.911 41 H 0.248 0.752 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.057 0.943 50 H 0.166 0.834 51 H 0.120 0.880 52 H 0.084 0.916 53 H 0.218 0.782 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.825 -9.668 18.611 28.182 hybrid contribution 0.297 -1.359 1.193 1.833 sum -18.528 -11.027 19.804 29.276 Atomic orbital electron populations 1.21894 0.93481 1.02361 1.03032 1.21323 0.97097 0.93737 1.01609 1.20844 0.89206 0.98621 0.99474 1.21926 1.03180 1.00104 0.94419 1.21946 1.03227 1.00095 0.94684 1.21176 0.91003 0.83148 0.74106 1.90672 1.71413 1.32989 1.51506 1.46095 1.06604 1.08925 1.74362 1.21483 0.79949 0.97586 0.96737 0.91174 1.22696 1.00995 0.97803 0.95064 1.22456 1.01511 0.94240 0.96858 1.22452 0.99122 1.00274 0.94068 1.21934 0.98783 0.95489 0.94166 0.89220 1.22090 0.98146 0.90277 0.95428 1.60091 1.45953 1.15232 1.09690 1.21550 0.97162 0.93369 0.94884 1.20815 0.81778 0.91916 0.82476 1.90490 1.58587 1.35820 1.65196 1.42007 1.45772 1.08476 1.26352 1.20560 1.33149 0.87007 1.13196 0.90767 1.27865 0.93850 1.07969 0.94482 1.70944 1.44755 0.98170 1.41766 0.82583 0.77171 0.69063 0.75542 1.19602 1.20147 1.19775 0.92451 0.91085 0.91491 0.93369 0.92861 0.90927 0.89262 0.92828 0.93466 0.89165 0.91119 0.75168 0.91773 0.91073 0.90467 0.90587 0.91806 0.90932 0.91305 0.94329 0.83440 0.88032 0.91643 0.78177 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.21 71.98 0.66 -0.81 16 2 C -0.10 -1.55 4.28 30.60 0.13 -1.41 16 3 C -0.08 -1.07 0.64 -52.93 -0.03 -1.11 16 4 C -0.14 -1.24 8.02 71.98 0.58 -0.66 16 5 C -0.14 -1.59 8.02 71.98 0.58 -1.01 16 6 C 0.52 10.45 6.48 87.66 0.57 11.02 16 7 O -0.59 -17.07 15.64 -3.05 -0.05 -17.12 16 8 N -0.71 -11.52 4.82 -439.07 -2.12 -13.63 16 9 C 0.15 2.74 2.90 45.72 0.13 2.88 16 10 H 0.07 1.64 7.09 -2.39 -0.02 1.62 16 11 C -0.13 -2.11 6.54 31.67 0.21 -1.90 16 12 C -0.11 -1.57 6.91 31.88 0.22 -1.35 16 13 C -0.12 -2.08 5.56 31.67 0.18 -1.90 16 14 C -0.08 -1.58 2.92 -10.07 -0.03 -1.61 16 15 H 0.09 1.71 7.62 -2.38 -0.02 1.69 16 16 C 0.07 1.61 4.80 86.30 0.41 2.03 16 17 N -0.68 -20.76 6.13 -517.92 -3.17 -23.94 16 18 C 0.06 2.15 6.17 85.56 0.53 2.68 16 19 C 0.44 21.08 7.82 87.66 0.69 21.77 16 20 O -0.62 -34.12 15.78 -3.05 -0.05 -34.17 16 21 N -0.59 -30.06 5.28 -306.98 -1.62 -31.69 16 22 C -0.41 -23.56 9.68 84.04 0.81 -22.74 16 23 H 0.07 4.57 7.16 -2.91 -0.02 4.55 16 24 C -0.04 -2.38 5.50 84.93 0.47 -1.91 16 25 N -0.92 -51.49 13.68 21.66 0.30 -51.20 16 26 Si 1.14 48.67 29.92 68.60 2.05 50.72 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.52 6.43 -2.39 -0.02 0.50 16 32 H 0.07 0.56 6.43 -2.39 -0.02 0.54 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 35 H 0.07 0.48 7.56 -2.39 -0.02 0.46 16 36 H 0.09 0.51 6.43 -2.38 -0.02 0.50 16 37 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.09 0.69 6.43 -2.39 -0.02 0.68 16 40 H 0.07 0.66 7.56 -2.38 -0.02 0.64 16 41 H 0.41 4.75 7.16 -92.71 -0.66 4.09 16 42 H 0.06 1.13 8.04 -2.39 -0.02 1.11 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.16 7.76 -2.39 -0.02 1.14 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.04 0.85 8.00 -2.39 -0.02 0.83 16 50 H 0.35 11.02 7.66 -89.69 -0.69 10.33 16 51 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 52 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 53 H 0.38 18.11 6.73 -92.71 -0.62 17.49 16 54 H 0.26 14.09 6.78 -92.71 -0.63 13.46 16 Total: -1.00 -74.74 420.47 0.51 -74.22 By element: Atomic # 1 Polarization: 43.78 SS G_CDS: -0.93 Total: 42.86 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 6.10 Total: 3.94 kcal Atomic # 7 Polarization: -113.84 SS G_CDS: -6.61 Total: -120.45 kcal Atomic # 8 Polarization: -51.19 SS G_CDS: -0.10 Total: -51.29 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.05 Total: 50.72 kcal Total: -74.74 0.51 -74.22 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715554167.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.858 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds