Wall clock time and date at job start Sat Apr 11 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47219 * 2 1 4 4 C 1.52999 * 109.46972 * 59.99460 * 3 2 1 5 5 C 1.53002 * 109.46747 * 299.99671 * 3 2 1 6 6 C 1.50693 * 109.47179 * 179.97438 * 3 2 1 7 7 O 1.21284 * 120.00239 * 359.97438 * 6 3 2 8 8 N 1.34782 * 120.00112 * 179.97438 * 6 3 2 9 9 C 1.46498 * 119.99774 * 179.97438 * 8 6 3 10 10 H 1.08996 * 110.01899 * 326.38867 * 9 8 6 11 11 C 1.54264 * 110.07612 * 87.80872 * 9 8 6 12 12 C 1.54887 * 104.19812 * 142.91005 * 11 9 8 13 13 C 1.54964 * 102.77692 * 322.08901 * 12 11 9 14 14 C 1.53876 * 110.02875 * 205.00080 * 9 8 6 15 15 H 1.08998 * 110.03553 * 121.33502 * 14 9 8 16 16 C 1.52998 * 110.03574 * 359.95021 * 14 9 8 17 17 N 1.46896 * 109.47624 * 175.69107 * 16 14 9 18 18 C 1.46899 * 111.00338 * 179.97438 * 17 16 14 19 19 C 1.50698 * 109.46987 * 179.97438 * 18 17 16 20 20 O 1.21293 * 120.00006 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99538 * 179.97438 * 19 18 17 22 22 C 1.37104 * 119.99773 * 179.72591 * 21 19 18 23 23 H 1.08002 * 119.99671 * 0.27660 * 22 21 19 24 24 C 1.38950 * 120.00030 * 180.27703 * 22 21 19 25 25 N 1.31413 * 119.99930 * 179.97438 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47112 * 89.99702 * 26 24 22 28 28 H 1.48498 * 109.47011 * 209.99970 * 26 24 22 29 29 H 1.48494 * 109.47201 * 329.99943 * 26 24 22 30 30 H 1.08998 * 109.47476 * 300.00655 * 1 2 3 31 31 H 1.09007 * 109.46762 * 60.00234 * 1 2 3 32 32 H 1.09001 * 109.47295 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46959 * 239.99326 * 2 1 3 34 34 H 1.09007 * 109.46762 * 119.99766 * 2 1 3 35 35 H 1.09006 * 109.46885 * 180.02562 * 4 3 2 36 36 H 1.08996 * 109.47267 * 300.00084 * 4 3 2 37 37 H 1.08997 * 109.47011 * 60.00339 * 4 3 2 38 38 H 1.09003 * 109.47284 * 299.99816 * 5 3 2 39 39 H 1.08997 * 109.47362 * 60.00559 * 5 3 2 40 40 H 1.09006 * 109.46814 * 180.02562 * 5 3 2 41 41 H 0.96991 * 119.99418 * 359.97438 * 8 6 3 42 42 H 1.08993 * 110.48715 * 261.59345 * 11 9 8 43 43 H 1.09002 * 110.48222 * 24.10373 * 11 9 8 44 44 H 1.09002 * 110.75173 * 80.37626 * 12 11 9 45 45 H 1.08999 * 110.76059 * 203.56104 * 12 11 9 46 46 H 1.09004 * 110.47366 * 279.22856 * 13 12 11 47 47 H 1.09002 * 110.52787 * 156.56447 * 13 12 11 48 48 H 1.09004 * 109.46677 * 55.69271 * 16 14 9 49 49 H 1.09004 * 109.46850 * 295.69570 * 16 14 9 50 50 H 1.00898 * 110.99977 * 303.96136 * 17 16 14 51 51 H 1.09003 * 109.46477 * 60.00383 * 18 17 16 52 52 H 1.08993 * 109.47002 * 300.00709 * 18 17 16 53 53 H 0.97001 * 120.00485 * 0.02562 * 21 19 18 54 54 H 0.96999 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5301 2.1636 -1.2493 6 6 3.5470 1.4425 0.0006 7 8 4.1534 0.3921 0.0015 8 7 4.2209 2.6097 0.0002 9 6 5.6859 2.6096 0.0014 10 1 6.0585 1.7571 0.5693 11 6 6.2166 2.5530 -1.4460 12 6 7.4721 3.4599 -1.4260 13 6 7.0455 4.6150 -0.4852 14 6 6.2125 3.9203 0.6118 15 1 6.8400 3.7040 1.4763 16 6 5.0413 4.8137 1.0251 17 7 5.5548 6.0139 1.6988 18 6 4.4558 6.8976 2.1103 19 6 5.0201 8.1147 2.7968 20 8 6.2198 8.2345 2.9296 21 7 4.1917 9.0706 3.2621 22 6 4.7047 10.1752 3.8916 23 1 5.7729 10.2815 4.0106 24 6 3.8504 11.1580 4.3764 25 7 4.3422 12.2166 4.9802 26 14 2.0029 10.9737 4.1712 27 1 1.4434 10.2577 5.3457 28 1 1.3799 12.3177 4.0678 29 1 1.7168 10.1993 2.9370 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.8929 3.1916 1.2489 36 1 0.4400 2.1637 1.2491 37 1 1.8932 1.6499 2.1392 38 1 1.8935 1.6498 -2.1393 39 1 0.4401 2.1637 -1.2494 40 1 1.8938 3.1912 -1.2496 41 1 3.7359 3.4496 -0.0009 42 1 6.4879 1.5317 -1.7131 43 1 5.4727 2.9432 -2.1405 44 1 8.3286 2.9248 -1.0159 45 1 7.6945 3.8338 -2.4254 46 1 6.4367 5.3408 -1.0244 47 1 7.9212 5.0976 -0.0511 48 1 4.3892 4.2661 1.7056 49 1 4.4779 5.1072 0.1393 50 1 6.1345 5.7662 2.4866 51 1 3.7993 6.3646 2.7982 52 1 3.8888 7.2054 1.2319 53 1 3.2323 8.9750 3.1555 54 1 3.7458 12.9028 5.3184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715554168.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:54 Heat of formation + Delta-G solvation = -113.645842 kcal Electronic energy + Delta-G solvation = -30560.138164 eV Core-core repulsion = 26529.966514 eV Total energy + Delta-G solvation = -4030.171650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60679 -40.31042 -39.55004 -37.25571 -36.44734 -35.74545 -34.73075 -33.73155 -31.30725 -31.06785 -28.46475 -28.27304 -28.21662 -25.97395 -25.71319 -24.19114 -22.95198 -21.62485 -21.30105 -20.53634 -20.19776 -19.89684 -17.98189 -17.84187 -17.28793 -16.97131 -16.65608 -16.24998 -16.18142 -15.96359 -15.53829 -15.42345 -15.17494 -14.96103 -14.85563 -14.80653 -14.53684 -14.26083 -13.91690 -13.68630 -13.51093 -13.26220 -13.15349 -12.95888 -12.84583 -12.78158 -12.72591 -12.47886 -12.39623 -12.26155 -12.13098 -11.96959 -11.90171 -11.74369 -11.59249 -11.53957 -11.50977 -11.49281 -11.48029 -10.63458 -10.41487 -10.23345 -10.04210 -9.28079 -8.39767 -6.00874 1.31577 1.37466 1.46600 1.65501 1.98416 2.19070 2.24923 2.72448 3.16971 3.31662 3.63380 3.66724 3.69423 3.76295 3.87925 3.90684 4.17052 4.22723 4.27984 4.36802 4.45305 4.45495 4.51370 4.53667 4.56979 4.58301 4.61569 4.69485 4.73034 4.76712 4.79703 4.87244 4.90654 4.94346 5.07349 5.10435 5.12636 5.13158 5.18020 5.22085 5.27477 5.37478 5.42367 5.50151 5.53312 5.54456 5.59619 5.91929 6.06427 6.36781 6.54861 6.61497 6.90105 7.26145 7.41888 7.99087 8.77997 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.002599 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.556373 B =10769.222429 C =12876.732313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.099 4.099 3 C -0.079 4.079 4 C -0.143 4.143 5 C -0.141 4.141 6 C 0.518 3.482 7 O -0.585 6.585 8 N -0.713 5.713 9 C 0.150 3.850 10 H 0.072 0.928 11 C -0.126 4.126 12 C -0.121 4.121 13 C -0.103 4.103 14 C -0.091 4.091 15 H 0.076 0.924 16 C 0.066 3.934 17 N -0.681 5.681 18 C 0.062 3.938 19 C 0.448 3.552 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.966 3.034 27 H -0.257 1.257 28 H -0.277 1.277 29 H -0.227 1.227 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.052 0.948 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.053 0.947 39 H 0.088 0.912 40 H 0.071 0.929 41 H 0.411 0.589 42 H 0.059 0.941 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.089 0.911 50 H 0.343 0.657 51 H 0.078 0.922 52 H 0.118 0.882 53 H 0.390 0.610 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.752 -24.005 -14.842 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.137 4.137 3 C -0.082 4.082 4 C -0.201 4.201 5 C -0.199 4.199 6 C 0.306 3.694 7 O -0.464 6.464 8 N -0.367 5.367 9 C 0.045 3.955 10 H 0.091 0.909 11 C -0.164 4.164 12 C -0.159 4.159 13 C -0.141 4.141 14 C -0.110 4.110 15 H 0.094 0.906 16 C -0.063 4.063 17 N -0.313 5.313 18 C -0.071 4.071 19 C 0.236 3.764 20 O -0.500 6.500 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.071 0.929 24 C -0.216 4.216 25 N -0.577 5.577 26 Si 0.786 3.214 27 H -0.182 1.182 28 H -0.202 1.202 29 H -0.150 1.150 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.251 0.749 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.088 0.912 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.107 0.893 50 H 0.161 0.839 51 H 0.096 0.904 52 H 0.136 0.864 53 H 0.226 0.774 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.427 -24.121 -15.229 30.372 hybrid contribution -0.722 0.296 1.201 1.432 sum -11.148 -23.825 -14.029 29.812 Atomic orbital electron populations 1.21902 0.93600 1.02340 1.03022 1.21314 0.96990 0.93717 1.01658 1.20846 0.89292 0.98642 0.99429 1.21962 1.03287 1.00110 0.94720 1.21946 1.03225 1.00105 0.94583 1.21175 0.90968 0.83221 0.74085 1.90666 1.71375 1.32987 1.51401 1.46302 1.06851 1.09018 1.74483 1.21541 0.79692 0.97465 0.96829 0.90937 1.22690 0.98049 0.99916 0.95790 1.22489 0.97039 0.96099 1.00247 1.22242 0.99319 0.97022 0.95471 1.21940 0.96914 0.93076 0.99069 0.90579 1.22101 0.96198 0.89098 0.98905 1.60021 1.20342 1.17274 1.33671 1.21651 0.93618 0.91234 1.00548 1.21056 0.86779 0.86110 0.82497 1.90553 1.17461 1.80252 1.61710 1.42028 1.08521 1.19205 1.53538 1.18998 0.94115 0.98228 1.34430 0.92859 1.26158 1.05526 0.94247 0.95657 1.69814 1.38372 1.10612 1.38902 0.85347 0.76021 0.79280 0.80754 1.18177 1.20228 1.15037 0.91453 0.91203 0.92463 0.92891 0.93198 0.91057 0.89236 0.93173 0.92803 0.89277 0.91009 0.74884 0.92212 0.90682 0.91360 0.90482 0.91202 0.92275 0.93737 0.89296 0.83866 0.90433 0.86440 0.77400 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.21 71.98 0.66 -0.77 16 2 C -0.10 -1.46 4.28 30.59 0.13 -1.33 16 3 C -0.08 -1.03 0.64 -52.93 -0.03 -1.06 16 4 C -0.14 -1.45 8.02 71.98 0.58 -0.87 16 5 C -0.14 -1.26 8.02 71.98 0.58 -0.68 16 6 C 0.52 9.91 6.48 87.65 0.57 10.48 16 7 O -0.58 -16.29 15.64 -3.04 -0.05 -16.34 16 8 N -0.71 -10.86 4.19 -439.11 -1.84 -12.70 16 9 C 0.15 2.64 3.22 45.72 0.15 2.79 16 10 H 0.07 1.58 7.56 -2.39 -0.02 1.57 16 11 C -0.13 -2.08 6.54 31.67 0.21 -1.87 16 12 C -0.12 -1.91 6.91 31.91 0.22 -1.69 16 13 C -0.10 -1.91 6.18 31.69 0.20 -1.71 16 14 C -0.09 -1.60 3.09 -10.07 -0.03 -1.63 16 15 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 16 C 0.07 1.13 3.61 86.30 0.31 1.44 16 17 N -0.68 -17.66 5.93 -517.94 -3.07 -20.73 16 18 C 0.06 1.67 6.17 85.56 0.53 2.20 16 19 C 0.45 19.31 7.82 87.66 0.69 20.00 16 20 O -0.62 -33.33 15.78 -3.07 -0.05 -33.38 16 21 N -0.59 -26.86 5.09 -306.98 -1.56 -28.43 16 22 C -0.33 -18.95 10.16 84.04 0.85 -18.09 16 23 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 24 C -0.02 -0.96 5.50 84.93 0.47 -0.49 16 25 N -0.94 -56.04 13.96 21.66 0.30 -55.74 16 26 Si 0.97 37.58 27.74 68.60 1.90 39.48 16 27 H -0.26 -9.46 7.11 99.48 0.71 -8.75 16 28 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 29 H -0.23 -7.24 6.52 99.48 0.65 -6.59 16 30 H 0.07 0.53 6.43 -2.39 -0.02 0.52 16 31 H 0.07 0.51 6.43 -2.38 -0.02 0.49 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.05 0.91 8.10 -2.38 -0.02 0.89 16 35 H 0.07 0.56 7.57 -2.38 -0.02 0.54 16 36 H 0.09 0.63 6.43 -2.39 -0.02 0.61 16 37 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.09 0.53 6.43 -2.39 -0.02 0.51 16 40 H 0.07 0.48 7.56 -2.38 -0.02 0.46 16 41 H 0.41 4.52 4.72 -92.72 -0.44 4.09 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.07 1.16 8.05 -2.39 -0.02 1.14 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 1.34 7.77 -2.39 -0.02 1.32 16 47 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.04 0.67 7.46 -2.38 -0.02 0.65 16 49 H 0.09 1.23 7.08 -2.38 -0.02 1.21 16 50 H 0.34 9.99 8.43 -89.70 -0.76 9.23 16 51 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 53 H 0.39 14.38 5.76 -92.71 -0.53 13.85 16 54 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -79.47 415.89 0.83 -78.65 By element: Atomic # 1 Polarization: 43.35 SS G_CDS: -0.88 Total: 42.48 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 6.07 Total: 6.71 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -6.17 Total: -117.59 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -0.10 Total: -49.72 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 1.90 Total: 39.48 kcal Total: -79.47 0.83 -78.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715554168.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.997 kcal (2) G-P(sol) polarization free energy of solvation -79.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds