Wall clock time and date at job start Sat Apr 11 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47299 * 2 1 4 4 C 1.52998 * 109.47299 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47149 * 60.00047 * 4 3 2 6 6 C 1.53000 * 109.46739 * 300.00168 * 4 3 2 7 7 C 1.50696 * 109.46959 * 180.02562 * 4 3 2 8 8 O 1.21286 * 120.00282 * 0.02562 * 7 4 3 9 9 N 1.34774 * 119.99763 * 179.97438 * 7 4 3 10 10 C 1.46506 * 119.99952 * 179.97438 * 9 7 4 11 11 C 1.53773 * 113.61686 * 254.13880 * 10 9 7 12 12 C 1.54049 * 86.98868 * 270.83833 * 11 10 9 13 13 C 1.53002 * 113.62545 * 220.02302 * 12 11 10 14 14 N 1.46903 * 109.46642 * 272.49637 * 13 12 11 15 15 C 1.46903 * 110.99743 * 179.97438 * 14 13 12 16 16 C 1.50697 * 109.47213 * 179.97438 * 15 14 13 17 17 O 1.21292 * 119.99953 * 359.97438 * 16 15 14 18 18 N 1.34780 * 119.99650 * 180.02562 * 16 15 14 19 19 C 1.37096 * 119.99346 * 179.97438 * 18 16 15 20 20 H 1.08001 * 120.00675 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99979 * 179.97438 * 19 18 16 22 22 N 1.31417 * 119.99680 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00412 * 179.97438 * 21 19 18 24 24 H 1.48492 * 109.46954 * 60.00019 * 23 21 19 25 25 H 1.48499 * 109.46999 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46905 * 299.99921 * 23 21 19 27 27 C 1.53781 * 113.61361 * 156.53041 * 10 9 7 28 28 H 1.08998 * 109.47323 * 299.99858 * 1 2 3 29 29 H 1.08999 * 109.47371 * 60.00037 * 1 2 3 30 30 H 1.09002 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47323 * 240.00142 * 2 1 3 32 32 H 1.08999 * 109.47371 * 119.99963 * 2 1 3 33 33 H 1.08998 * 109.46817 * 59.99832 * 3 2 1 34 34 H 1.08999 * 109.46879 * 300.00264 * 3 2 1 35 35 H 1.08997 * 109.46993 * 180.02562 * 5 4 3 36 36 H 1.09002 * 109.47011 * 300.00017 * 5 4 3 37 37 H 1.08999 * 109.47052 * 59.99721 * 5 4 3 38 38 H 1.09001 * 109.46944 * 299.99603 * 6 4 3 39 39 H 1.08992 * 109.47504 * 60.00510 * 6 4 3 40 40 H 1.09009 * 109.46529 * 180.02562 * 6 4 3 41 41 H 0.96997 * 120.00341 * 359.97438 * 9 7 4 42 42 H 1.09002 * 112.84852 * 25.33640 * 10 9 7 43 43 H 1.09007 * 113.61678 * 25.42910 * 11 10 9 44 44 H 1.09000 * 113.61916 * 156.33583 * 11 10 9 45 45 H 1.09005 * 113.68989 * 89.12112 * 12 11 10 46 46 H 1.09005 * 109.46483 * 32.48989 * 13 12 11 47 47 H 1.08995 * 109.47301 * 152.49438 * 13 12 11 48 48 H 1.00896 * 111.00440 * 56.04050 * 14 13 12 49 49 H 1.08998 * 109.46937 * 299.99866 * 15 14 13 50 50 H 1.09003 * 109.47232 * 59.99322 * 15 14 13 51 51 H 0.96997 * 120.00384 * 359.97438 * 18 16 15 52 52 H 0.96997 * 119.99707 * 179.97438 * 22 21 19 53 53 H 1.09001 * 113.61158 * 203.66864 * 27 10 9 54 54 H 1.08998 * 113.61196 * 334.56885 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.7215 -1.2502 6 6 4.0805 0.7211 1.2483 7 6 4.0723 2.8633 0.0000 8 8 3.2842 3.7852 0.0013 9 7 5.3974 3.1096 0.0001 10 6 5.8857 4.4909 0.0002 11 6 6.4542 4.9433 -1.3551 12 6 7.8147 4.4060 -0.8719 13 6 8.9977 5.2961 -1.2583 14 7 9.4810 4.9161 -2.5925 15 6 10.6191 5.7519 -2.9979 16 6 11.0869 5.3334 -4.3679 17 8 10.5276 4.4276 -4.9492 18 7 12.1274 5.9650 -4.9467 19 6 12.5532 5.5838 -6.1929 20 1 12.0553 4.7773 -6.7106 21 6 13.6256 6.2352 -6.7900 22 7 14.2318 7.2163 -6.1599 23 14 14.2064 5.7155 -8.4876 24 1 13.0983 5.8814 -9.4621 25 1 15.3570 6.5603 -8.8972 26 1 14.6260 4.2915 -8.4527 27 6 7.3096 4.6408 0.5614 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9564 -0.8900 35 1 5.1695 0.7211 -1.2504 36 1 3.7162 -0.3062 -1.2502 37 1 3.7158 1.2354 -2.1400 38 1 3.7175 1.2348 2.1385 39 1 3.7172 -0.3066 1.2482 40 1 5.1705 0.7215 1.2480 41 1 6.0277 2.3724 0.0001 42 1 5.1708 5.1925 0.4300 43 1 6.0444 4.3972 -2.2048 44 1 6.4371 6.0239 -1.4970 45 1 7.9802 3.3552 -1.1099 46 1 8.6793 6.3385 -1.2705 47 1 9.8001 5.1697 -0.5315 48 1 8.7378 4.9628 -3.2732 49 1 10.3115 6.7973 -3.0222 50 1 11.4329 5.6292 -2.2832 51 1 12.5748 6.6891 -4.4817 52 1 14.9807 7.6708 -6.5766 53 1 7.5257 5.6388 0.9426 54 1 7.5897 3.8506 1.2581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717390713.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:42 Heat of formation + Delta-G solvation = -103.342273 kcal Electronic energy + Delta-G solvation = -29124.678383 eV Core-core repulsion = 25094.953530 eV Total energy + Delta-G solvation = -4029.724854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61612 -40.24840 -39.80481 -37.56069 -36.53107 -35.77668 -34.45806 -33.27652 -33.00778 -29.77243 -28.28269 -27.49287 -27.27396 -26.64756 -25.56614 -24.59482 -22.94665 -22.16712 -21.13090 -20.17503 -20.00819 -19.86349 -18.00415 -17.64955 -17.19494 -17.02046 -16.48573 -16.36420 -16.16767 -15.87798 -15.80634 -15.44558 -15.23750 -15.10449 -14.91040 -14.40976 -14.14362 -14.07493 -13.95432 -13.60484 -13.49526 -13.37134 -13.33348 -13.12624 -13.08583 -12.83477 -12.72082 -12.61888 -12.56071 -12.43679 -12.12710 -11.97802 -11.84268 -11.82157 -11.59622 -11.50566 -11.43716 -11.32847 -11.07261 -10.65541 -10.34258 -10.02864 -10.01884 -9.30355 -8.46738 -5.95735 1.39870 1.41754 1.52763 1.60595 2.05175 2.14883 2.29291 2.93568 3.20460 3.49811 3.54783 3.59922 3.70644 3.75698 3.85417 3.93317 3.97958 4.18439 4.26947 4.32341 4.33194 4.45264 4.49812 4.55076 4.56656 4.68737 4.72799 4.78300 4.79131 4.80747 4.81290 4.88200 4.90238 4.93634 4.94020 5.05524 5.06918 5.09340 5.18919 5.21322 5.22403 5.31600 5.35643 5.40413 5.46094 5.51471 5.66806 5.90755 6.13300 6.42242 6.54212 6.60079 7.12220 7.24076 7.55980 8.11405 8.70363 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019784 B = 0.001603 C = 0.001523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1414.937010 B =17461.256971 C =18383.369960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.092 4.092 4 C -0.077 4.077 5 C -0.143 4.143 6 C -0.140 4.140 7 C 0.519 3.481 8 O -0.586 6.586 9 N -0.699 5.699 10 C 0.117 3.883 11 C -0.153 4.153 12 C -0.099 4.099 13 C 0.069 3.931 14 N -0.682 5.682 15 C 0.064 3.936 16 C 0.436 3.564 17 O -0.624 6.624 18 N -0.573 5.573 19 C -0.337 4.337 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.272 1.272 27 C -0.119 4.119 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.413 0.587 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.089 0.911 45 H 0.094 0.906 46 H 0.039 0.961 47 H 0.082 0.918 48 H 0.341 0.659 49 H 0.064 0.936 50 H 0.105 0.895 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.107 0.893 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.731 -10.954 19.581 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.131 4.131 4 C -0.080 4.080 5 C -0.200 4.200 6 C -0.197 4.197 7 C 0.307 3.693 8 O -0.466 6.466 9 N -0.350 5.350 10 C 0.011 3.989 11 C -0.191 4.191 12 C -0.118 4.118 13 C -0.059 4.059 14 N -0.314 5.314 15 C -0.068 4.068 16 C 0.224 3.776 17 O -0.511 6.511 18 N -0.210 5.210 19 C -0.467 4.467 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.194 1.194 26 H -0.197 1.197 27 C -0.157 4.157 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.250 0.750 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.108 0.892 45 H 0.112 0.888 46 H 0.057 0.943 47 H 0.101 0.899 48 H 0.159 0.841 49 H 0.081 0.919 50 H 0.123 0.877 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.126 0.874 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -20.076 -11.273 19.391 30.102 hybrid contribution 0.386 1.167 -1.163 1.692 sum -19.690 -10.106 18.228 28.672 Atomic orbital electron populations 1.21782 0.95880 1.02062 1.01477 1.21662 0.95889 0.95172 1.03237 1.21397 0.92183 0.97863 1.01618 1.20834 0.97237 0.90471 0.99501 1.21951 1.01840 1.01516 0.94683 1.21938 1.01955 1.01413 0.94385 1.21200 0.82134 0.92007 0.73924 1.90670 1.56503 1.47956 1.51476 1.45651 1.06903 1.08303 1.74153 1.21790 0.96142 0.83823 0.97128 1.23577 0.96724 1.01488 0.97344 1.22583 0.92383 1.00215 0.96615 1.22067 0.97297 0.96844 0.89698 1.60123 1.10378 1.56019 1.04859 1.21543 0.96197 0.95866 0.93221 1.20931 0.82519 0.84777 0.89405 1.90484 1.59559 1.33927 1.67108 1.41930 1.29165 1.33081 1.16821 1.19649 1.14555 1.17993 0.94478 0.90348 1.26039 0.95976 0.95692 1.03446 1.69667 1.23157 1.23013 1.40201 0.84986 0.77881 0.78310 0.77138 1.19766 1.19414 1.19700 1.23250 0.92247 1.04414 0.95794 0.93067 0.93464 0.91645 0.90848 0.90293 0.92784 0.93466 0.91139 0.89101 0.93552 0.92697 0.89217 0.90852 0.75016 0.89741 0.92743 0.89217 0.88812 0.94326 0.89947 0.84124 0.91853 0.87698 0.76960 0.91274 0.87439 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 71.98 0.71 -0.95 16 2 C -0.12 -1.26 5.23 30.60 0.16 -1.10 16 3 C -0.09 -1.45 3.56 30.60 0.11 -1.34 16 4 C -0.08 -1.07 0.64 -52.93 -0.03 -1.10 16 5 C -0.14 -1.66 8.02 71.98 0.58 -1.08 16 6 C -0.14 -1.23 8.02 71.98 0.58 -0.66 16 7 C 0.52 10.58 6.48 87.66 0.57 11.15 16 8 O -0.59 -17.26 15.60 -3.05 -0.05 -17.31 16 9 N -0.70 -11.22 5.05 -440.04 -2.22 -13.44 16 10 C 0.12 2.03 4.30 45.51 0.20 2.23 16 11 C -0.15 -2.97 7.45 31.21 0.23 -2.74 16 12 C -0.10 -1.75 3.79 -10.18 -0.04 -1.79 16 13 C 0.07 1.47 5.52 86.30 0.48 1.95 16 14 N -0.68 -21.01 6.13 -517.92 -3.17 -24.18 16 15 C 0.06 2.18 6.17 85.56 0.53 2.71 16 16 C 0.44 20.90 7.82 87.66 0.69 21.59 16 17 O -0.62 -34.92 15.78 -3.07 -0.05 -34.97 16 18 N -0.57 -29.58 5.29 -306.98 -1.62 -31.20 16 19 C -0.34 -19.29 9.68 84.04 0.81 -18.48 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 22 N -0.92 -49.64 13.05 21.67 0.28 -49.36 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.01 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 26 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 27 C -0.12 -1.52 7.38 31.12 0.23 -1.29 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.66 6.43 -2.39 -0.02 0.65 16 32 H 0.08 0.61 6.43 -2.39 -0.02 0.60 16 33 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 34 H 0.05 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.07 0.70 7.57 -2.39 -0.02 0.68 16 36 H 0.09 0.73 6.43 -2.39 -0.02 0.72 16 37 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.09 0.51 6.43 -2.39 -0.02 0.49 16 40 H 0.07 0.47 7.56 -2.38 -0.02 0.45 16 41 H 0.41 4.66 7.54 -92.71 -0.70 3.96 16 42 H 0.08 1.77 7.50 -2.39 -0.02 1.75 16 43 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.09 1.72 7.90 -2.39 -0.02 1.70 16 45 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.04 0.76 7.85 -2.38 -0.02 0.74 16 47 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.34 11.38 8.43 -89.70 -0.76 10.62 16 49 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 51 H 0.40 19.38 7.90 -92.71 -0.73 18.64 16 52 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 53 H 0.11 1.18 8.10 -2.39 -0.02 1.16 16 54 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -73.33 428.52 0.17 -73.15 By element: Atomic # 1 Polarization: 44.64 SS G_CDS: -1.28 Total: 43.36 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.26 Total: 8.93 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -6.73 Total: -118.18 kcal Atomic # 8 Polarization: -52.18 SS G_CDS: -0.10 Total: -52.27 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.33 0.17 -73.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717390713.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.190 kcal (2) G-P(sol) polarization free energy of solvation -73.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds