Wall clock time and date at job start Sat Apr 11 2020 05:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46633 * 2 1 4 4 C 1.53001 * 109.46961 * 60.00470 * 3 2 1 5 5 C 1.53002 * 109.47500 * 300.00343 * 3 2 1 6 6 C 1.53003 * 109.46633 * 180.02562 * 3 2 1 7 7 C 1.50709 * 109.46745 * 179.97438 * 6 3 2 8 8 O 1.21274 * 119.99908 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99502 * 180.02562 * 7 6 3 10 10 C 1.47470 * 125.63079 * 0.08798 * 9 7 6 11 11 C 1.54914 * 104.80539 * 155.85850 * 10 9 7 12 12 H 1.08999 * 111.00152 * 278.85612 * 11 10 9 13 13 N 1.46901 * 111.00055 * 155.04979 * 11 10 9 14 14 C 1.46902 * 110.99844 * 89.57726 * 13 11 10 15 15 C 1.50702 * 109.47027 * 179.97438 * 14 13 11 16 16 O 1.21293 * 120.00255 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99928 * 179.72353 * 15 14 13 18 18 C 1.37101 * 120.00327 * 180.27606 * 17 15 14 19 19 H 1.08001 * 119.99426 * 0.02562 * 18 17 15 20 20 C 1.38942 * 120.00412 * 180.02562 * 18 17 15 21 21 N 1.31414 * 120.00005 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00325 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47047 * 89.99811 * 22 20 18 24 24 H 1.48501 * 109.47447 * 210.00167 * 22 20 18 25 25 H 1.48499 * 109.46902 * 330.00508 * 22 20 18 26 26 C 1.55154 * 101.62075 * 36.95602 * 11 10 9 27 27 C 1.47030 * 125.64376 * 180.02562 * 9 7 6 28 28 H 1.08991 * 110.01130 * 61.60952 * 27 9 7 29 29 C 1.52995 * 109.88165 * 300.51329 * 27 9 7 30 30 H 1.08999 * 109.47221 * 299.99637 * 1 2 3 31 31 H 1.08996 * 109.47369 * 59.99863 * 1 2 3 32 32 H 1.09010 * 109.46876 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46557 * 240.00717 * 2 1 3 34 34 H 1.08996 * 109.47369 * 120.00137 * 2 1 3 35 35 H 1.08998 * 109.47054 * 179.97438 * 4 3 2 36 36 H 1.08994 * 109.47155 * 299.99799 * 4 3 2 37 37 H 1.09001 * 109.46905 * 59.99796 * 4 3 2 38 38 H 1.08999 * 109.46900 * 299.99971 * 5 3 2 39 39 H 1.08994 * 109.46977 * 59.99980 * 5 3 2 40 40 H 1.08998 * 109.46824 * 180.02562 * 5 3 2 41 41 H 1.09000 * 109.46557 * 60.00717 * 6 3 2 42 42 H 1.08996 * 109.47369 * 300.00137 * 6 3 2 43 43 H 1.08990 * 110.40418 * 37.00877 * 10 9 7 44 44 H 1.09001 * 110.34626 * 274.66923 * 10 9 7 45 45 H 1.00895 * 111.00207 * 213.53069 * 13 11 10 46 46 H 1.09004 * 109.47131 * 60.00016 * 14 13 11 47 47 H 1.08994 * 109.47471 * 299.99766 * 14 13 11 48 48 H 0.97000 * 120.00317 * 0.28382 * 17 15 14 49 49 H 0.96996 * 120.00330 * 179.97438 * 21 20 18 50 50 H 1.08998 * 110.71958 * 82.87967 * 26 11 10 51 51 H 1.09000 * 110.71952 * 205.96901 * 26 11 10 52 52 H 1.09004 * 109.47213 * 302.19863 * 29 27 9 53 53 H 1.09007 * 109.47051 * 62.19427 * 29 27 9 54 54 H 1.08995 * 109.47225 * 182.18974 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1637 1.2493 5 6 1.5298 2.1639 -1.2492 6 6 3.5699 1.4426 -0.0006 7 6 4.0722 2.8635 -0.0013 8 8 3.2841 3.7852 -0.0008 9 7 5.3973 3.1097 -0.0024 10 6 6.4609 2.0883 -0.0050 11 6 7.6924 2.8006 -0.6180 12 1 7.6331 2.8162 -1.7062 13 7 8.9418 2.1707 -0.1705 14 6 9.3407 1.0882 -1.0801 15 6 10.6237 0.4677 -0.5902 16 8 11.1534 0.8857 0.4177 17 7 11.1793 -0.5557 -1.2687 18 6 12.3435 -1.1240 -0.8200 19 1 12.8151 -0.7518 0.0775 20 6 12.9165 -2.1788 -1.5197 21 7 12.3429 -2.6314 -2.6120 22 14 14.5031 -2.9526 -0.9087 23 1 14.1848 -4.0673 0.0194 24 1 15.2758 -3.4756 -2.0640 25 1 15.3100 -1.9300 -0.1957 26 6 7.5498 4.2304 -0.0326 27 6 6.0213 4.4410 -0.0026 28 1 5.7396 4.9851 0.8987 29 6 5.5796 5.2226 -1.2415 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.8935 3.1912 1.2496 36 1 0.4400 2.1636 1.2494 37 1 1.8934 1.6498 2.1392 38 1 1.8932 1.6501 -2.1392 39 1 0.4399 2.1638 -1.2491 40 1 1.8935 3.1914 -1.2493 41 1 3.9328 0.9290 -0.8909 42 1 3.9337 0.9286 0.8891 43 1 6.1693 1.2376 -0.6207 44 1 6.6778 1.7644 1.0129 45 1 9.6781 2.8541 -0.0770 46 1 9.4919 1.4920 -2.0812 47 1 8.5578 0.3304 -1.1084 48 1 10.7555 -0.8903 -2.0746 49 1 12.7431 -3.3674 -3.1008 50 1 7.9652 4.2782 0.9740 51 1 8.0303 4.9625 -0.6816 52 1 5.8483 4.6642 -2.1383 53 1 4.4996 5.3674 -1.2137 54 1 6.0760 6.1928 -1.2551 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717814893.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:44 Heat of formation + Delta-G solvation = -103.362787 kcal Electronic energy + Delta-G solvation = -30314.186516 eV Core-core repulsion = 26284.460773 eV Total energy + Delta-G solvation = -4029.725743 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55811 -40.20183 -39.48796 -37.73412 -36.20006 -35.54024 -33.27758 -33.19054 -31.47838 -31.01720 -28.78557 -28.12435 -27.84624 -26.83447 -25.78370 -24.91686 -22.99896 -21.63565 -21.07143 -20.10428 -19.85091 -19.34470 -18.21255 -17.59028 -17.21757 -16.73264 -16.60335 -16.26064 -16.07708 -15.78331 -15.67046 -15.58054 -15.10328 -14.88277 -14.58901 -14.51044 -14.32063 -13.92096 -13.79778 -13.79048 -13.51540 -13.38857 -13.12403 -13.07206 -12.98342 -12.82411 -12.66917 -12.60211 -12.39826 -12.19197 -12.12300 -12.06977 -11.98850 -11.91897 -11.71901 -11.59484 -11.48556 -11.36983 -11.31850 -10.37617 -10.29908 -9.99256 -9.63047 -9.37267 -8.45021 -5.93242 1.39336 1.43560 1.55605 1.67840 1.95603 2.08128 2.30709 2.89781 3.22948 3.34318 3.54090 3.61873 3.77029 3.81505 3.92897 4.03049 4.19146 4.23910 4.31179 4.36034 4.40519 4.41175 4.50721 4.53265 4.59643 4.63882 4.66411 4.69800 4.72348 4.77551 4.86646 4.89088 4.94435 4.95977 5.03371 5.08376 5.13766 5.14553 5.19368 5.24729 5.25995 5.32451 5.43051 5.43302 5.46905 5.60959 5.70348 5.90637 6.11198 6.36691 6.58210 6.62256 7.15053 7.24980 7.59210 8.14344 8.72270 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013437 B = 0.002165 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.369258 B =12931.504560 C =14447.583305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.112 4.112 3 C -0.044 4.044 4 C -0.149 4.149 5 C -0.149 4.149 6 C -0.129 4.129 7 C 0.527 3.473 8 O -0.557 6.557 9 N -0.615 5.615 10 C 0.109 3.891 11 C 0.078 3.922 12 H 0.072 0.928 13 N -0.667 5.667 14 C 0.065 3.935 15 C 0.438 3.562 16 O -0.623 6.623 17 N -0.574 5.574 18 C -0.331 4.331 19 H 0.079 0.921 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.990 3.010 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.273 1.273 26 C -0.122 4.122 27 C 0.136 3.864 28 H 0.068 0.932 29 C -0.154 4.154 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.057 0.943 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.352 0.648 46 H 0.069 0.931 47 H 0.107 0.893 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.056 0.944 53 H 0.050 0.950 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.916 9.102 0.216 22.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.045 4.045 4 C -0.206 4.206 5 C -0.206 4.206 6 C -0.168 4.168 7 C 0.318 3.682 8 O -0.437 6.437 9 N -0.349 5.349 10 C -0.014 4.014 11 C -0.033 4.033 12 H 0.090 0.910 13 N -0.301 5.301 14 C -0.067 4.067 15 C 0.226 3.774 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.461 4.461 19 H 0.097 0.903 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.197 1.197 25 H -0.198 1.198 26 C -0.160 4.160 27 C 0.033 3.967 28 H 0.086 0.914 29 C -0.212 4.212 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.092 0.908 45 H 0.173 0.827 46 H 0.087 0.913 47 H 0.125 0.875 48 H 0.231 0.769 49 H 0.086 0.914 50 H 0.102 0.898 51 H 0.118 0.882 52 H 0.075 0.925 53 H 0.070 0.930 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.312 9.277 1.193 23.274 hybrid contribution 1.069 -0.185 -0.846 1.375 sum -20.244 9.092 0.347 22.194 Atomic orbital electron populations 1.21867 0.95438 1.01801 1.02029 1.21571 0.96502 0.94541 1.02364 1.20279 0.92033 0.95874 0.96307 1.22071 1.01036 1.01265 0.96269 1.22068 1.01013 1.01295 0.96205 1.21835 0.97113 0.92543 1.05317 1.20733 0.80042 0.92418 0.75002 1.90555 1.54207 1.47767 1.51128 1.48700 1.05183 1.08090 1.72974 1.22379 0.85917 0.91074 1.02060 1.22635 0.89206 0.93383 0.98039 0.91003 1.59937 1.06119 1.14158 1.49863 1.21610 0.94503 0.95772 0.94834 1.20889 0.88308 0.82698 0.85504 1.90503 1.66476 1.65590 1.28369 1.41937 1.22950 1.30370 1.25860 1.19644 1.01458 1.14700 1.10304 0.90327 1.25999 1.02447 0.97040 0.95775 1.69663 1.41548 1.27707 1.17208 0.84964 0.77446 0.78269 0.77902 1.19723 1.19676 1.19786 1.22860 0.93934 0.96053 1.03177 1.21503 0.92233 0.84079 0.98934 0.91387 1.22069 1.01818 1.00441 0.96867 0.92593 0.92521 0.92278 0.91463 0.91608 0.92194 0.92351 0.93318 0.93151 0.92409 0.92116 0.87752 0.88089 0.89400 0.90780 0.82746 0.91294 0.87523 0.76938 0.91351 0.89773 0.88218 0.92529 0.93048 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.21 71.98 0.66 -1.30 16 2 C -0.11 -1.53 4.99 30.60 0.15 -1.38 16 3 C -0.04 -0.74 0.54 -52.18 -0.03 -0.77 16 4 C -0.15 -2.77 7.83 71.98 0.56 -2.21 16 5 C -0.15 -2.70 7.82 71.98 0.56 -2.13 16 6 C -0.13 -2.13 3.78 29.85 0.11 -2.02 16 7 C 0.53 11.35 7.04 87.66 0.62 11.96 16 8 O -0.56 -14.74 10.25 -3.01 -0.03 -14.77 16 9 N -0.62 -12.26 3.08 -787.95 -2.43 -14.69 16 10 C 0.11 2.07 6.38 86.85 0.55 2.63 16 11 C 0.08 1.52 3.34 46.31 0.15 1.67 16 12 H 0.07 1.29 7.87 -2.39 -0.02 1.28 16 13 N -0.67 -17.92 6.02 -488.39 -2.94 -20.86 16 14 C 0.07 1.96 6.05 85.56 0.52 2.48 16 15 C 0.44 19.57 7.82 87.66 0.69 20.25 16 16 O -0.62 -32.89 15.78 -3.07 -0.05 -32.94 16 17 N -0.57 -28.16 5.29 -306.98 -1.62 -29.78 16 18 C -0.33 -18.30 9.68 84.04 0.81 -17.49 16 19 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 20 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 21 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 22 Si 0.99 42.05 29.55 68.60 2.03 44.08 16 23 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 C -0.12 -2.07 5.92 31.78 0.19 -1.88 16 27 C 0.14 2.55 3.50 45.34 0.16 2.71 16 28 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 29 C -0.15 -2.73 9.05 71.98 0.65 -2.08 16 30 H 0.06 0.72 6.43 -2.39 -0.02 0.71 16 31 H 0.06 0.73 6.43 -2.39 -0.02 0.71 16 32 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.41 5.51 -2.39 -0.01 1.40 16 36 H 0.06 0.99 6.43 -2.39 -0.02 0.98 16 37 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.06 0.97 6.43 -2.39 -0.02 0.95 16 40 H 0.06 1.40 5.51 -2.39 -0.01 1.39 16 41 H 0.10 1.47 7.84 -2.39 -0.02 1.45 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.44 7.48 -2.39 -0.02 1.42 16 44 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.35 10.01 8.18 -89.70 -0.73 9.27 16 46 H 0.07 1.80 8.09 -2.38 -0.02 1.78 16 47 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 48 H 0.40 18.41 7.90 -92.71 -0.73 17.67 16 49 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 50 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 51 H 0.10 1.38 7.84 -2.39 -0.02 1.36 16 52 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 53 H 0.05 1.13 6.76 -2.38 -0.02 1.12 16 54 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.33 414.65 1.51 -64.82 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: -0.57 Total: 42.10 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.83 Total: 10.24 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -6.71 Total: -113.54 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -0.08 Total: -47.71 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -66.33 1.51 -64.82 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717814893.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.538 kcal (2) G-P(sol) polarization free energy of solvation -66.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds