Wall clock time and date at job start Sat Apr 11 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47134 * 2 1 4 4 C 1.53006 * 109.46988 * 119.99613 * 2 1 3 5 5 C 1.53004 * 109.46749 * 65.00216 * 4 2 1 6 6 C 1.50702 * 109.47002 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99800 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00124 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00119 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47122 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00309 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99785 * 179.97438 * 10 9 8 13 13 C 1.47420 * 125.65269 * 354.11616 * 12 10 9 14 14 C 1.54688 * 104.94666 * 204.07560 * 13 12 10 15 15 C 1.55156 * 101.67593 * 323.27598 * 14 13 12 16 16 C 1.47032 * 125.64812 * 174.42455 * 12 10 9 17 17 H 1.09002 * 109.87812 * 59.32937 * 16 12 10 18 18 C 1.52997 * 109.87983 * 298.31921 * 16 12 10 19 19 N 1.46503 * 109.47018 * 173.31436 * 18 16 12 20 20 C 1.46498 * 120.00099 * 95.32417 * 19 18 16 21 21 C 1.36936 * 120.00019 * 275.32622 * 19 18 16 22 22 H 1.08009 * 119.99923 * 29.89515 * 21 19 18 23 23 C 1.38815 * 120.00058 * 209.88897 * 21 19 18 24 24 N 1.31612 * 119.99802 * 7.62639 * 23 21 19 25 25 Si 1.86805 * 119.99787 * 187.62029 * 23 21 19 26 26 H 1.48495 * 109.47031 * 60.00702 * 25 23 21 27 27 H 1.48494 * 109.46724 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47377 * 300.00225 * 25 23 21 29 29 H 1.09002 * 109.47094 * 300.00093 * 1 2 3 30 30 H 1.08999 * 109.47207 * 60.00103 * 1 2 3 31 31 H 1.09006 * 109.47143 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47094 * 239.99907 * 2 1 3 33 33 H 1.08994 * 109.47245 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.46989 * 300.00030 * 3 2 1 35 35 H 1.08999 * 109.47451 * 59.99500 * 3 2 1 36 36 H 1.08999 * 109.46846 * 305.00283 * 4 2 1 37 37 H 1.08998 * 109.47014 * 184.99950 * 4 2 1 38 38 H 1.09001 * 109.47142 * 59.99928 * 5 4 2 39 39 H 1.08998 * 109.47145 * 299.99653 * 5 4 2 40 40 H 0.96999 * 119.99926 * 359.97438 * 8 6 5 41 41 H 1.08998 * 109.46888 * 299.99959 * 9 8 6 42 42 H 1.08997 * 109.47339 * 59.99076 * 9 8 6 43 43 H 1.09007 * 110.36547 * 323.00814 * 13 12 10 44 44 H 1.09007 * 110.36833 * 85.32446 * 13 12 10 45 45 H 1.08998 * 111.10350 * 205.10889 * 14 13 12 46 46 H 1.09003 * 110.81632 * 81.31525 * 14 13 12 47 47 H 1.09001 * 110.71815 * 276.97444 * 15 14 13 48 48 H 1.09001 * 110.87689 * 153.76596 * 15 14 13 49 49 H 1.09002 * 109.47599 * 293.31336 * 18 16 12 50 50 H 1.09002 * 109.47084 * 53.31853 * 18 16 12 51 51 H 1.09000 * 109.46863 * 85.73828 * 20 19 18 52 52 H 1.08995 * 109.47365 * 205.73972 * 20 19 18 53 53 H 1.09001 * 109.47181 * 325.74500 * 20 19 18 54 54 H 0.96998 * 120.00067 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1955 1.1880 6 6 2.1380 -2.9060 2.4183 7 8 2.7594 -2.2936 3.2608 8 7 1.8981 -4.2221 2.5817 9 6 2.3865 -4.9127 3.7779 10 6 1.9879 -6.3647 3.7175 11 8 1.3576 -6.7816 2.7689 12 7 2.3319 -7.2001 4.7176 13 6 3.1957 -6.8596 5.8627 14 6 3.7744 -8.2118 6.3418 15 6 2.5692 -9.1642 6.1234 16 6 1.9131 -8.6038 4.8440 17 1 2.2473 -9.1700 3.9746 18 6 0.3898 -8.6836 4.9625 19 7 -0.0299 -10.0868 4.9273 20 6 -0.2510 -10.8168 6.1780 21 6 -0.2154 -10.7159 3.7252 22 1 0.3629 -10.4160 2.8637 23 6 -1.1467 -11.7394 3.6140 24 7 -1.9555 -12.0050 4.6177 25 14 -1.2518 -12.7393 2.0396 26 1 0.0495 -13.4100 1.7914 27 1 -2.3191 -13.7630 2.1739 28 1 -1.5700 -11.8395 0.9020 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6053 -0.2616 2.1370 37 1 3.1263 -0.6443 1.2953 38 1 2.0699 -2.6550 0.3003 39 1 0.5489 -2.2724 1.1421 40 1 1.4015 -4.7119 1.9077 41 1 3.4727 -4.8353 3.8240 42 1 1.9516 -4.4535 4.6656 43 1 3.9986 -6.1932 5.5474 44 1 2.6085 -6.3983 6.6569 45 1 4.0525 -8.1687 7.3948 46 1 4.6238 -8.5093 5.7268 47 1 1.8789 -9.1120 6.9654 48 1 2.9071 -10.1886 5.9665 49 1 0.0745 -8.2336 5.9039 50 1 -0.0679 -8.1465 4.1317 51 1 -1.2691 -10.6416 6.5258 52 1 -0.1039 -11.8832 6.0072 53 1 0.4553 -10.4687 6.9317 54 1 -2.6065 -12.7199 4.5398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733938317.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:23 Heat of formation + Delta-G solvation = -89.287146 kcal Electronic energy + Delta-G solvation = -30035.474948 eV Core-core repulsion = 26006.359570 eV Total energy + Delta-G solvation = -4029.115378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51813 -40.61528 -38.82008 -37.47339 -37.11430 -35.50798 -33.63462 -32.75964 -32.04012 -30.78722 -28.74268 -27.99455 -27.97852 -26.81851 -25.25381 -23.95603 -22.77782 -21.92613 -21.47071 -20.77284 -20.08350 -18.75608 -18.46025 -17.87019 -17.29757 -17.08801 -16.94543 -16.61236 -16.18070 -15.77930 -15.57751 -15.40277 -15.16000 -14.96487 -14.62413 -14.49547 -14.34665 -14.23735 -13.85595 -13.75658 -13.67489 -13.37549 -13.14327 -13.04570 -13.00608 -12.78747 -12.62778 -12.59850 -12.38472 -12.22794 -12.21288 -12.04327 -11.95130 -11.68265 -11.58657 -11.50411 -11.49962 -11.42923 -11.02984 -10.94543 -10.64929 -10.25448 -9.76265 -8.65491 -7.88240 -5.41685 1.41744 1.43869 1.45881 1.51168 1.60032 1.68032 2.32914 2.48842 3.26286 3.33249 3.65677 3.71674 3.79081 3.88935 3.91655 3.99668 4.04180 4.18060 4.25542 4.29815 4.35129 4.39367 4.43525 4.50008 4.56654 4.68304 4.70800 4.82978 4.86172 4.87548 4.90258 4.97850 4.98003 5.06521 5.07680 5.12677 5.16248 5.16866 5.18240 5.23718 5.29180 5.36042 5.41988 5.48634 5.50471 5.55730 5.59909 5.67299 6.33800 6.42978 6.51123 7.02201 7.14427 7.15261 7.83218 8.28702 9.15387 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.002287 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.676495 B =12239.615882 C =13987.041176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.148 4.148 4 C -0.094 4.094 5 C -0.138 4.138 6 C 0.515 3.485 7 O -0.578 6.578 8 N -0.721 5.721 9 C 0.115 3.885 10 C 0.514 3.486 11 O -0.575 6.575 12 N -0.609 5.609 13 C 0.090 3.910 14 C -0.121 4.121 15 C -0.112 4.112 16 C 0.126 3.874 17 H 0.039 0.961 18 C 0.152 3.848 19 N -0.609 5.609 20 C 0.178 3.822 21 C -0.262 4.262 22 H 0.052 0.948 23 C -0.046 4.046 24 N -0.935 5.935 25 Si 0.967 3.033 26 H -0.275 1.275 27 H -0.288 1.288 28 H -0.282 1.282 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.113 0.887 39 H 0.111 0.889 40 H 0.414 0.586 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.089 0.911 45 H 0.114 0.886 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.070 0.930 49 H 0.049 0.951 50 H 0.019 0.981 51 H -0.009 1.009 52 H 0.026 0.974 53 H 0.038 0.962 54 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.671 21.767 -1.473 25.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.132 4.132 5 C -0.177 4.177 6 C 0.304 3.696 7 O -0.458 6.458 8 N -0.376 5.376 9 C -0.012 4.012 10 C 0.303 3.697 11 O -0.455 6.455 12 N -0.342 5.342 13 C -0.031 4.031 14 C -0.158 4.158 15 C -0.151 4.151 16 C 0.020 3.980 17 H 0.057 0.943 18 C 0.025 3.975 19 N -0.333 5.333 20 C 0.033 3.967 21 C -0.392 4.392 22 H 0.070 0.930 23 C -0.242 4.242 24 N -0.580 5.580 25 Si 0.794 3.206 26 H -0.201 1.201 27 H -0.213 1.213 28 H -0.208 1.208 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.107 0.893 45 H 0.132 0.868 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.067 0.933 50 H 0.038 0.962 51 H 0.010 0.990 52 H 0.045 0.955 53 H 0.057 0.943 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 12.624 21.891 -1.385 25.308 hybrid contribution -0.865 -1.303 -1.111 1.918 sum 11.759 20.588 -2.496 23.840 Atomic orbital electron populations 1.21937 0.94939 1.02186 1.01928 1.21136 0.96151 0.96453 0.97650 1.21830 1.01021 0.95689 1.01956 1.21353 1.01006 0.92533 0.98273 1.21812 1.04060 0.96545 0.95282 1.21303 0.78567 0.80949 0.88828 1.90677 1.42433 1.66611 1.46075 1.45916 1.58059 1.09972 1.23622 1.21012 1.02062 0.87408 0.90736 1.20641 0.79321 0.88470 0.81290 1.90735 1.42473 1.78143 1.34158 1.48648 1.49556 1.11818 1.24203 1.22689 0.93854 0.98801 0.87726 1.22772 0.96599 0.92690 1.03759 1.22561 0.97699 0.99539 0.95255 1.22164 0.96307 0.80881 0.98645 0.94322 1.20996 0.92796 0.85401 0.98332 1.43892 1.79536 1.07066 1.02767 1.20591 0.95507 0.94996 0.85591 1.19238 1.15402 1.15080 0.89513 0.93032 1.25901 0.95768 1.02088 1.00414 1.70161 1.22522 1.32823 1.32534 0.85366 0.77378 0.78152 0.79677 1.20091 1.21326 1.20807 0.93042 0.92110 0.92125 0.90320 0.92687 0.91933 0.93015 0.92521 0.92192 0.86843 0.87129 0.74804 0.87005 0.87454 0.87915 0.89324 0.86766 0.90421 0.90389 0.91108 0.93299 0.96230 0.99049 0.95526 0.94340 0.94022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.95 71.98 0.64 -1.08 16 2 C -0.10 -1.13 2.92 -10.79 -0.03 -1.16 16 3 C -0.15 -1.67 9.19 71.98 0.66 -1.01 16 4 C -0.09 -1.44 3.97 30.60 0.12 -1.32 16 5 C -0.14 -2.05 5.46 29.85 0.16 -1.88 16 6 C 0.51 11.23 7.83 87.66 0.69 11.91 16 7 O -0.58 -16.15 15.98 -3.04 -0.05 -16.19 16 8 N -0.72 -16.09 5.53 -466.80 -2.58 -18.67 16 9 C 0.11 2.55 5.26 85.63 0.45 3.00 16 10 C 0.51 15.40 7.62 87.65 0.67 16.07 16 11 O -0.58 -22.68 14.86 -3.03 -0.04 -22.73 16 12 N -0.61 -17.01 3.07 -788.48 -2.42 -19.43 16 13 C 0.09 1.56 6.63 86.78 0.58 2.14 16 14 C -0.12 -2.05 7.07 31.91 0.23 -1.83 16 15 C -0.11 -3.03 5.61 31.78 0.18 -2.85 16 16 C 0.13 4.44 3.05 45.34 0.14 4.58 16 17 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 18 C 0.15 6.67 5.15 86.38 0.44 7.12 16 19 N -0.61 -31.58 2.80 -726.93 -2.04 -33.62 16 20 C 0.18 8.70 8.75 127.77 1.12 9.82 16 21 C -0.26 -15.20 9.59 84.03 0.81 -14.40 16 22 H 0.05 3.07 7.84 -2.91 -0.02 3.05 16 23 C -0.05 -2.68 5.13 84.86 0.44 -2.25 16 24 N -0.93 -56.51 10.92 21.65 0.24 -56.27 16 25 Si 0.97 46.92 29.56 68.60 2.03 48.94 16 26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 28 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.65 6.56 -2.38 -0.02 0.64 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.06 1.02 8.10 -2.39 -0.02 1.01 16 37 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 38 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.38 6.56 -2.39 -0.02 1.37 16 40 H 0.41 9.42 7.44 -92.71 -0.69 8.73 16 41 H 0.11 2.10 7.75 -2.39 -0.02 2.08 16 42 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.10 1.24 7.52 -2.38 -0.02 1.22 16 44 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 45 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 47 H 0.08 2.08 6.41 -2.39 -0.02 2.07 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 49 H 0.05 1.98 7.87 -2.39 -0.02 1.96 16 50 H 0.02 0.98 6.81 -2.39 -0.02 0.96 16 51 H -0.01 -0.48 7.75 -2.39 -0.02 -0.49 16 52 H 0.03 1.40 7.05 -2.39 -0.02 1.39 16 53 H 0.04 1.53 6.15 -2.39 -0.01 1.51 16 54 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -76.64 422.30 2.60 -74.03 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: 0.18 Total: 17.07 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 7.29 Total: 26.86 kcal Atomic # 7 Polarization: -121.19 SS G_CDS: -6.80 Total: -127.99 kcal Atomic # 8 Polarization: -38.83 SS G_CDS: -0.09 Total: -38.92 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 2.03 Total: 48.94 kcal Total: -76.64 2.60 -74.03 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733938317.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.254 kcal (2) G-P(sol) polarization free energy of solvation -76.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds