Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47314 * 2 1 4 4 C 1.53002 * 109.47174 * 120.00071 * 2 1 3 5 5 C 1.52993 * 109.47112 * 174.99836 * 4 2 1 6 6 C 1.50705 * 109.47107 * 180.02562 * 5 4 2 7 7 O 1.21277 * 119.99965 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99717 * 179.97438 * 6 5 4 9 9 C 1.46507 * 119.99564 * 179.97438 * 8 6 5 10 10 C 1.50696 * 109.46882 * 180.02562 * 9 8 6 11 11 O 1.21287 * 120.00175 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99975 * 180.02562 * 10 9 8 13 13 C 1.47417 * 125.64810 * 5.06948 * 12 10 9 14 14 C 1.54905 * 104.83429 * 155.90500 * 13 12 10 15 15 C 1.55400 * 101.66577 * 36.92233 * 14 13 12 16 16 C 1.47022 * 125.64540 * 185.10874 * 12 10 9 17 17 H 1.09001 * 109.88526 * 300.59257 * 16 12 10 18 18 C 1.52995 * 109.88370 * 61.61181 * 16 12 10 19 19 N 1.46505 * 109.47128 * 185.71395 * 18 16 12 20 20 C 1.46498 * 120.00111 * 264.34158 * 19 18 16 21 21 C 1.36933 * 119.99931 * 84.34043 * 19 18 16 22 22 H 1.08003 * 119.99978 * 337.16203 * 21 19 18 23 23 C 1.38807 * 120.00077 * 156.89148 * 21 19 18 24 24 N 1.31622 * 120.00139 * 347.62968 * 23 21 19 25 25 Si 1.86802 * 120.00064 * 167.63178 * 23 21 19 26 26 H 1.48505 * 109.47005 * 90.00288 * 25 23 21 27 27 H 1.48500 * 109.47216 * 209.99744 * 25 23 21 28 28 H 1.48491 * 109.47478 * 330.00130 * 25 23 21 29 29 H 1.09002 * 109.46972 * 299.99838 * 1 2 3 30 30 H 1.08998 * 109.47461 * 59.99643 * 1 2 3 31 31 H 1.08997 * 109.47155 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46972 * 240.00162 * 2 1 3 33 33 H 1.09002 * 109.46969 * 60.00160 * 3 2 1 34 34 H 1.08997 * 109.46992 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47147 * 300.00549 * 3 2 1 36 36 H 1.09007 * 109.46730 * 55.00046 * 4 2 1 37 37 H 1.08996 * 109.47070 * 295.00028 * 4 2 1 38 38 H 1.09001 * 109.47305 * 59.99774 * 5 4 2 39 39 H 1.09004 * 109.47490 * 300.00297 * 5 4 2 40 40 H 0.97001 * 120.00133 * 0.02562 * 8 6 5 41 41 H 1.08998 * 109.46984 * 60.00474 * 9 8 6 42 42 H 1.08996 * 109.47241 * 300.00363 * 9 8 6 43 43 H 1.08996 * 110.36731 * 274.74922 * 13 12 10 44 44 H 1.09001 * 110.36650 * 37.06816 * 13 12 10 45 45 H 1.08996 * 111.00564 * 155.08431 * 14 13 12 46 46 H 1.09004 * 111.00577 * 278.89512 * 14 13 12 47 47 H 1.09003 * 110.85849 * 206.29646 * 15 14 13 48 48 H 1.08999 * 110.69320 * 82.95309 * 15 14 13 49 49 H 1.09001 * 109.47424 * 65.71409 * 18 16 12 50 50 H 1.09004 * 109.46991 * 305.71274 * 18 16 12 51 51 H 1.09004 * 109.46846 * 264.78003 * 20 19 18 52 52 H 1.09003 * 109.47158 * 24.77548 * 20 19 18 53 53 H 1.09002 * 109.47134 * 144.77500 * 20 19 18 54 54 H 0.96993 * 120.00468 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 6 4.0671 -1.5421 2.4181 7 8 3.2827 -1.9238 3.2606 8 7 5.3879 -1.7546 2.5814 9 6 5.8763 -2.4453 3.7776 10 6 7.3781 -2.5536 3.7172 11 8 7.9813 -2.0982 2.7686 12 7 8.0511 -3.1565 4.7173 13 6 7.4422 -3.8428 5.8711 14 6 8.5198 -4.8480 6.3485 15 6 9.8271 -4.0397 6.1193 16 6 9.5140 -3.2378 4.8384 17 1 9.9301 -3.7489 3.9702 18 6 10.1062 -1.8313 4.9474 19 7 11.5687 -1.9145 4.9303 20 6 12.3161 -1.9329 6.1902 21 6 12.2372 -1.9751 3.7368 22 1 11.7295 -2.3269 2.8508 23 6 13.5656 -1.5791 3.6644 24 7 14.1123 -0.9230 4.6659 25 14 14.5774 -1.9773 2.1455 26 1 14.4526 -0.8704 1.1634 27 1 16.0028 -2.1403 2.5289 28 1 14.0814 -3.2375 1.5365 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6053 -1.7199 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 3.9994 0.1674 1.1420 39 1 3.8532 -1.3940 0.3002 40 1 6.0153 -1.4496 1.9074 41 1 5.4412 -3.4437 3.8237 42 1 5.5883 -1.8822 4.6653 43 1 7.2143 -3.1272 6.6611 44 1 6.5394 -4.3714 5.5650 45 1 8.3888 -5.0895 7.4033 46 1 8.5087 -5.7515 5.7388 47 1 10.6733 -4.7078 5.9589 48 1 10.0172 -3.3692 6.9573 49 1 9.7793 -1.3706 5.8797 50 1 9.7667 -1.2279 4.1054 51 1 12.6396 -0.9212 6.4355 52 1 11.6764 -2.3129 6.9867 53 1 13.1885 -2.5781 6.0858 54 1 15.0407 -0.6466 4.6155 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733938318.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -87.436971 kcal Electronic energy + Delta-G solvation = -30028.415083 eV Core-core repulsion = 25999.379935 eV Total energy + Delta-G solvation = -4029.035148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.51545 -40.61314 -38.81683 -37.47286 -37.13150 -35.50688 -33.62419 -32.74533 -32.03712 -30.76809 -28.73950 -28.01419 -27.97767 -26.81501 -25.25231 -23.95520 -22.77894 -21.92432 -21.46974 -20.77135 -20.07933 -18.76553 -18.46683 -17.87162 -17.29975 -17.09091 -16.93931 -16.59777 -16.18359 -15.77640 -15.58062 -15.40386 -15.14842 -14.96767 -14.61976 -14.49233 -14.34980 -14.23236 -13.87159 -13.76058 -13.68039 -13.37247 -13.15737 -13.04502 -12.97308 -12.79871 -12.62568 -12.59277 -12.39352 -12.21188 -12.15486 -12.05251 -11.91890 -11.68181 -11.61216 -11.50144 -11.49809 -11.42807 -11.03011 -10.94536 -10.67100 -10.25324 -9.76828 -8.74546 -7.84882 -5.34285 1.42293 1.42347 1.45851 1.52971 1.60193 1.67780 2.32898 2.49767 3.26533 3.33414 3.64809 3.71782 3.78638 3.88837 3.91277 3.99782 4.04072 4.18181 4.25584 4.29958 4.35190 4.39490 4.42964 4.49058 4.56795 4.68439 4.70441 4.83083 4.83497 4.87129 4.89003 4.97383 4.98030 5.06682 5.07839 5.12189 5.16298 5.16698 5.18343 5.23832 5.30625 5.36146 5.42035 5.48464 5.50600 5.55825 5.60999 5.71777 6.30246 6.43126 6.50909 7.01951 7.14236 7.15193 7.84957 8.26685 9.17084 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.002250 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.679879 B =12443.441975 C =14077.449967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.153 4.153 4 C -0.094 4.094 5 C -0.138 4.138 6 C 0.515 3.485 7 O -0.578 6.578 8 N -0.721 5.721 9 C 0.115 3.885 10 C 0.514 3.486 11 O -0.576 6.576 12 N -0.608 5.608 13 C 0.091 3.909 14 C -0.121 4.121 15 C -0.112 4.112 16 C 0.125 3.875 17 H 0.038 0.962 18 C 0.152 3.848 19 N -0.610 5.610 20 C 0.179 3.821 21 C -0.257 4.257 22 H 0.055 0.945 23 C -0.051 4.051 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.287 1.287 27 H -0.286 1.286 28 H -0.274 1.274 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.414 0.586 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.089 0.911 44 H 0.103 0.897 45 H 0.113 0.887 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.051 0.949 50 H 0.020 0.980 51 H 0.000 1.000 52 H 0.041 0.959 53 H 0.017 0.983 54 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.220 -4.142 -1.447 25.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.210 4.210 4 C -0.132 4.132 5 C -0.177 4.177 6 C 0.304 3.696 7 O -0.458 6.458 8 N -0.376 5.376 9 C -0.012 4.012 10 C 0.303 3.697 11 O -0.455 6.455 12 N -0.342 5.342 13 C -0.031 4.031 14 C -0.158 4.158 15 C -0.150 4.150 16 C 0.020 3.980 17 H 0.056 0.944 18 C 0.025 3.975 19 N -0.334 5.334 20 C 0.035 3.965 21 C -0.388 4.388 22 H 0.073 0.927 23 C -0.246 4.246 24 N -0.583 5.583 25 Si 0.794 3.206 26 H -0.214 1.214 27 H -0.212 1.212 28 H -0.199 1.199 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.129 0.871 39 H 0.131 0.869 40 H 0.252 0.748 41 H 0.130 0.870 42 H 0.126 0.874 43 H 0.107 0.893 44 H 0.121 0.879 45 H 0.132 0.868 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.069 0.931 50 H 0.039 0.961 51 H 0.018 0.982 52 H 0.059 0.941 53 H 0.035 0.965 54 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -25.323 -4.083 -1.361 25.686 hybrid contribution 1.567 0.265 -1.102 1.934 sum -23.756 -3.818 -2.463 24.187 Atomic orbital electron populations 1.21831 0.94867 1.01847 1.01954 1.21136 0.96121 0.96485 0.97652 1.21935 1.01422 0.95698 1.01927 1.21351 0.92638 1.00909 0.98272 1.21810 0.98080 1.02522 0.95281 1.21302 0.80925 0.78597 0.88822 1.90676 1.55980 1.53064 1.46073 1.45918 1.08377 1.59647 1.23626 1.21013 0.88702 1.00748 0.90754 1.20645 0.90275 0.77482 0.81306 1.90734 1.70768 1.49822 1.34211 1.48646 1.07123 1.54574 1.23836 1.22730 0.97524 0.95318 0.87481 1.22849 0.92103 0.97160 1.03727 1.22592 0.98821 0.98367 0.95251 1.22161 0.79051 0.98147 0.98685 0.94357 1.21000 0.83642 0.94366 0.98529 1.43977 1.00607 1.85940 1.02881 1.20606 0.93202 0.97679 0.85029 1.19315 0.94520 1.36108 0.88811 0.92717 1.25739 0.99507 0.98915 1.00467 1.70218 1.13066 1.41802 1.33217 0.85301 0.77923 0.78001 0.79395 1.21394 1.21224 1.19944 0.93006 0.91944 0.92698 0.90329 0.93032 0.92108 0.92125 0.92210 0.92514 0.87108 0.86853 0.74792 0.87035 0.87415 0.89262 0.87900 0.86819 0.90441 0.91227 0.90382 0.93074 0.96116 0.98179 0.94068 0.96459 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.19 71.98 0.66 -0.99 16 2 C -0.10 -1.12 2.92 -10.79 -0.03 -1.15 16 3 C -0.15 -1.70 8.95 71.98 0.64 -1.06 16 4 C -0.09 -1.43 3.97 30.59 0.12 -1.30 16 5 C -0.14 -2.02 5.45 29.85 0.16 -1.85 16 6 C 0.51 11.11 7.83 87.66 0.69 11.80 16 7 O -0.58 -16.03 15.98 -3.02 -0.05 -16.08 16 8 N -0.72 -15.88 5.53 -466.78 -2.58 -18.46 16 9 C 0.11 2.51 5.25 85.63 0.45 2.96 16 10 C 0.51 15.24 7.63 87.66 0.67 15.91 16 11 O -0.58 -22.45 14.84 -3.05 -0.05 -22.49 16 12 N -0.61 -16.85 3.06 -788.09 -2.42 -19.27 16 13 C 0.09 1.55 6.65 86.85 0.58 2.13 16 14 C -0.12 -2.06 7.09 32.07 0.23 -1.83 16 15 C -0.11 -3.04 5.76 31.87 0.18 -2.85 16 16 C 0.13 4.41 3.05 45.34 0.14 4.55 16 17 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 18 C 0.15 6.60 5.09 86.38 0.44 7.04 16 19 N -0.61 -31.53 2.80 -726.93 -2.04 -33.57 16 20 C 0.18 8.78 8.62 127.77 1.10 9.88 16 21 C -0.26 -14.92 9.65 84.03 0.81 -14.10 16 22 H 0.05 3.26 7.86 -2.91 -0.02 3.24 16 23 C -0.05 -2.99 5.11 84.86 0.43 -2.55 16 24 N -0.94 -56.58 10.68 21.65 0.23 -56.35 16 25 Si 0.97 47.02 29.57 68.60 2.03 49.05 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 28 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.64 6.57 -2.39 -0.02 0.63 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 1.03 8.10 -2.38 -0.02 1.01 16 37 H 0.06 1.02 8.10 -2.39 -0.02 1.00 16 38 H 0.11 1.36 6.57 -2.39 -0.02 1.34 16 39 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 40 H 0.41 9.29 7.44 -92.71 -0.69 8.60 16 41 H 0.11 2.07 7.76 -2.39 -0.02 2.05 16 42 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.23 7.51 -2.39 -0.02 1.21 16 45 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.08 2.09 6.31 -2.39 -0.02 2.08 16 49 H 0.05 2.03 7.90 -2.39 -0.02 2.01 16 50 H 0.02 1.02 6.81 -2.38 -0.02 1.01 16 51 H 0.00 -0.01 7.33 -2.39 -0.02 -0.02 16 52 H 0.04 1.63 6.27 -2.39 -0.01 1.61 16 53 H 0.02 0.89 7.34 -2.39 -0.02 0.87 16 54 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -76.54 422.04 2.59 -73.95 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.18 Total: 16.65 kcal Atomic # 6 Polarization: 19.29 SS G_CDS: 7.28 Total: 26.57 kcal Atomic # 7 Polarization: -120.85 SS G_CDS: -6.80 Total: -127.65 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -0.09 Total: -38.57 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -76.54 2.59 -73.95 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733938318.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.483 kcal (2) G-P(sol) polarization free energy of solvation -76.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds