Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47000 * 2 1 4 4 C 1.52998 * 109.46876 * 59.99835 * 3 2 1 5 5 C 1.52996 * 109.46899 * 300.00007 * 3 2 1 6 6 C 1.50700 * 109.47208 * 179.97438 * 3 2 1 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 3 2 8 8 N 1.34777 * 119.99675 * 180.27843 * 6 3 2 9 9 C 1.46497 * 119.99525 * 179.72583 * 8 6 3 10 10 H 1.08997 * 109.50565 * 324.92078 * 9 8 6 11 11 C 1.53124 * 109.50631 * 84.99921 * 9 8 6 12 12 C 1.53116 * 109.15921 * 62.28093 * 11 9 8 13 13 C 1.53043 * 109.27800 * 57.65967 * 12 11 9 14 14 N 1.46843 * 109.52258 * 300.81726 * 13 12 11 15 15 C 1.46897 * 111.00155 * 185.83965 * 14 13 12 16 16 C 1.50700 * 109.47052 * 293.95754 * 15 14 13 17 17 O 1.21294 * 119.99759 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00189 * 180.02562 * 16 15 14 19 19 C 1.37087 * 120.00245 * 179.97438 * 18 16 15 20 20 H 1.08007 * 119.99902 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00187 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00006 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00058 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47068 * 60.00130 * 23 21 19 25 25 H 1.48500 * 109.46847 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47004 * 299.99838 * 23 21 19 27 27 C 1.46848 * 111.19873 * 61.74326 * 14 13 12 28 28 H 1.09000 * 109.46124 * 58.26776 * 27 14 13 29 29 C 1.52994 * 109.46537 * 178.24574 * 27 14 13 30 30 H 1.08995 * 109.47672 * 299.99669 * 1 2 3 31 31 H 1.09001 * 109.47109 * 60.00906 * 1 2 3 32 32 H 1.09004 * 109.46774 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47849 * 239.99917 * 2 1 3 34 34 H 1.08998 * 109.47443 * 119.99785 * 2 1 3 35 35 H 1.09004 * 109.47239 * 180.02562 * 4 3 2 36 36 H 1.09005 * 109.47323 * 300.00275 * 4 3 2 37 37 H 1.09006 * 109.47458 * 59.99925 * 4 3 2 38 38 H 1.08995 * 109.47223 * 299.99332 * 5 3 2 39 39 H 1.08996 * 109.47637 * 59.99854 * 5 3 2 40 40 H 1.09004 * 109.46762 * 179.97438 * 5 3 2 41 41 H 0.97000 * 119.99894 * 359.71837 * 8 6 3 42 42 H 1.09000 * 109.52415 * 182.19178 * 11 9 8 43 43 H 1.09004 * 109.52265 * 302.38009 * 11 9 8 44 44 H 1.09000 * 109.50365 * 177.59649 * 12 11 9 45 45 H 1.08998 * 109.51110 * 297.71673 * 12 11 9 46 46 H 1.08997 * 109.45948 * 60.83396 * 13 12 11 47 47 H 1.09000 * 109.45891 * 180.81409 * 13 12 11 48 48 H 1.08995 * 109.47009 * 53.95350 * 15 14 13 49 49 H 1.09001 * 109.47430 * 173.95441 * 15 14 13 50 50 H 0.97005 * 119.99182 * 359.97438 * 18 16 15 51 51 H 0.97002 * 119.99852 * 180.02562 * 22 21 19 52 52 H 1.08996 * 109.47483 * 180.02562 * 29 27 14 53 53 H 1.09008 * 109.46820 * 300.05224 * 29 27 14 54 54 H 1.08996 * 109.47444 * 60.04839 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5299 2.1637 1.2492 5 6 1.5299 2.1637 -1.2492 6 6 3.5470 1.4426 0.0006 7 8 4.1534 0.3923 0.0015 8 7 4.2207 2.6099 0.0064 9 6 5.6857 2.6099 0.0131 10 1 6.0469 1.7677 0.6033 11 6 6.2035 2.4874 -1.4227 12 6 5.7409 3.7039 -2.2293 13 6 6.2474 4.9803 -1.5538 14 7 5.7241 5.0513 -0.1836 15 6 6.0759 6.3297 0.4488 16 6 7.5699 6.4055 0.6311 17 8 8.2724 5.4849 0.2703 18 7 8.1254 7.4958 1.1962 19 6 9.4843 7.5646 1.3626 20 1 10.1099 6.7449 1.0412 21 6 10.0570 8.6889 1.9446 22 7 9.2959 9.6864 2.3351 23 14 11.9088 8.7823 2.1720 24 1 12.5756 8.6843 0.8487 25 1 12.2645 10.0750 2.8105 26 1 12.3584 7.6621 3.0369 27 6 6.1939 3.9181 0.6236 28 1 7.2837 3.9115 0.6408 29 6 5.6623 4.0543 2.0517 30 1 -0.3634 0.5137 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.8928 3.1916 1.2491 36 1 0.4398 2.1637 1.2492 37 1 1.8932 1.6499 2.1393 38 1 1.8933 1.6500 -2.1392 39 1 0.4400 2.1637 -1.2493 40 1 1.8929 3.1916 -1.2490 41 1 3.7356 3.4499 0.0060 42 1 7.2928 2.4482 -1.4150 43 1 5.8086 1.5781 -1.8761 44 1 6.1421 3.6437 -3.2409 45 1 4.6518 3.7211 -2.2696 46 1 7.3370 4.9688 -1.5263 47 1 5.9075 5.8490 -2.1177 48 1 5.7452 7.1520 -0.1856 49 1 5.5871 6.4011 1.4204 50 1 7.5634 8.2318 1.4851 51 1 9.6958 10.4714 2.7411 52 1 6.0112 3.2135 2.6511 53 1 6.0241 4.9861 2.4867 54 1 4.5725 4.0604 2.0348 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734464721.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -107.016252 kcal Electronic energy + Delta-G solvation = -31964.343573 eV Core-core repulsion = 27934.459404 eV Total energy + Delta-G solvation = -4029.884169 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.79034 -40.77718 -39.08474 -37.20550 -36.13259 -35.27829 -34.10242 -33.29434 -32.38232 -30.67950 -28.92056 -28.19650 -27.75426 -26.38484 -25.74958 -24.12070 -22.80172 -22.56787 -21.06068 -20.35068 -19.93974 -19.65312 -18.01432 -17.63809 -17.18211 -16.67466 -16.47187 -16.31162 -16.21804 -15.78655 -15.66019 -15.46689 -15.22847 -14.98058 -14.81068 -14.55646 -14.29565 -13.76456 -13.57480 -13.49573 -13.44444 -13.29047 -13.05313 -12.96257 -12.91212 -12.88660 -12.71411 -12.57824 -12.45403 -12.38458 -12.23530 -12.11321 -12.07438 -11.81000 -11.53553 -11.49072 -11.47908 -11.37928 -11.16289 -10.93024 -10.54035 -9.98303 -9.92257 -8.99563 -8.46367 -5.95585 1.35997 1.39075 1.48918 1.76009 2.03351 2.27628 2.30485 2.95200 3.19984 3.27997 3.68560 3.74342 3.84759 3.86222 3.97815 4.02314 4.15650 4.29274 4.39416 4.41457 4.49004 4.50774 4.60133 4.61218 4.63879 4.70513 4.74606 4.75258 4.80706 4.84788 4.90713 4.97539 5.00552 5.03668 5.06280 5.13917 5.15125 5.17256 5.19246 5.20072 5.30028 5.30393 5.37844 5.43155 5.48429 5.59441 5.64781 5.91389 6.07130 6.12471 6.59416 6.74681 7.12360 7.39703 7.56645 8.11948 8.68539 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024605 B = 0.002494 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.706195 B =11224.903526 C =11465.796217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.076 4.076 4 C -0.141 4.141 5 C -0.139 4.139 6 C 0.515 3.485 7 O -0.593 6.593 8 N -0.692 5.692 9 C 0.167 3.833 10 H 0.064 0.936 11 C -0.126 4.126 12 C -0.097 4.097 13 C 0.042 3.958 14 N -0.487 5.487 15 C 0.047 3.953 16 C 0.410 3.590 17 O -0.621 6.621 18 N -0.570 5.570 19 C -0.331 4.331 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.987 3.013 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.274 1.274 27 C 0.058 3.942 28 H 0.063 0.937 29 C -0.137 4.137 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.056 0.944 33 H 0.049 0.951 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.048 0.952 38 H 0.050 0.950 39 H 0.090 0.910 40 H 0.070 0.930 41 H 0.415 0.585 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.072 0.928 45 H 0.081 0.919 46 H 0.028 0.972 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.114 0.886 50 H 0.396 0.604 51 H 0.277 0.723 52 H 0.051 0.949 53 H 0.047 0.953 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.450 -10.024 -4.936 23.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.079 4.079 4 C -0.198 4.198 5 C -0.196 4.196 6 C 0.303 3.697 7 O -0.473 6.473 8 N -0.344 5.344 9 C 0.061 3.939 10 H 0.082 0.918 11 C -0.165 4.165 12 C -0.135 4.135 13 C -0.086 4.086 14 N -0.210 5.210 15 C -0.085 4.085 16 C 0.197 3.803 17 O -0.509 6.509 18 N -0.207 5.207 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.558 5.558 23 Si 0.811 3.189 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.200 1.200 27 C -0.051 4.051 28 H 0.080 0.920 29 C -0.194 4.194 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.254 0.746 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.091 0.909 45 H 0.099 0.901 46 H 0.046 0.954 47 H 0.099 0.901 48 H 0.130 0.870 49 H 0.132 0.868 50 H 0.230 0.770 51 H 0.087 0.913 52 H 0.071 0.929 53 H 0.066 0.934 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -20.026 -11.184 -5.105 23.498 hybrid contribution 2.187 0.817 0.456 2.378 sum -17.839 -10.367 -4.649 21.150 Atomic orbital electron populations 1.21887 0.93379 1.02307 1.03078 1.21311 0.97115 0.93738 1.01492 1.20821 0.88963 0.98566 0.99554 1.21939 1.03157 1.00125 0.94564 1.21921 1.03104 1.00117 0.94485 1.21244 0.91083 0.83065 0.74311 1.90655 1.71500 1.33086 1.52106 1.45859 1.06009 1.09019 1.73478 1.20724 0.80931 0.96288 0.95922 0.91764 1.21869 1.00026 0.98873 0.95761 1.21429 1.01762 0.92235 0.98080 1.22243 0.98251 0.98995 0.89117 1.62498 1.56121 1.00363 1.02031 1.22213 0.89099 0.94220 1.02953 1.22170 0.92731 0.83072 0.82320 1.90411 1.65227 1.38987 1.56249 1.42115 1.07357 1.17672 1.53532 1.19555 0.83985 1.03519 1.38998 0.90626 1.25961 1.04310 0.94645 0.96208 1.69653 1.37493 1.07412 1.41246 0.85081 0.77536 0.77761 0.78533 1.19903 1.19504 1.19972 1.22086 0.99772 0.89825 0.93442 0.91978 1.21790 1.02239 1.01202 0.94209 0.91280 0.91191 0.92487 0.93179 0.93308 0.91108 0.89079 0.93246 0.93113 0.89127 0.91090 0.74645 0.92934 0.92122 0.90932 0.90057 0.95356 0.90067 0.86983 0.86783 0.77029 0.91331 0.92947 0.93408 0.90105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.21 71.98 0.66 -1.01 16 2 C -0.10 -1.74 4.28 30.59 0.13 -1.61 16 3 C -0.08 -1.25 0.64 -52.93 -0.03 -1.28 16 4 C -0.14 -1.78 8.01 71.98 0.58 -1.21 16 5 C -0.14 -1.70 8.02 71.98 0.58 -1.12 16 6 C 0.52 12.53 6.45 87.66 0.57 13.09 16 7 O -0.59 -19.76 15.65 -3.04 -0.05 -19.81 16 8 N -0.69 -15.45 3.49 -442.27 -1.54 -16.99 16 9 C 0.17 4.71 2.26 45.05 0.10 4.82 16 10 H 0.06 2.09 7.58 -2.39 -0.02 2.08 16 11 C -0.13 -3.56 5.67 30.67 0.17 -3.38 16 12 C -0.10 -2.36 5.93 30.65 0.18 -2.18 16 13 C 0.04 1.22 5.09 86.33 0.44 1.66 16 14 N -0.49 -13.53 4.17 -875.65 -3.65 -17.18 16 15 C 0.05 1.43 5.30 85.56 0.45 1.88 16 16 C 0.41 17.85 7.04 87.66 0.62 18.47 16 17 O -0.62 -31.23 11.20 -3.07 -0.03 -31.26 16 18 N -0.57 -27.79 5.29 -306.99 -1.62 -29.41 16 19 C -0.33 -18.23 9.68 84.04 0.81 -17.41 16 20 H 0.08 4.48 7.16 -2.91 -0.02 4.46 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 22 N -0.92 -48.48 13.05 21.66 0.28 -48.20 16 23 Si 0.99 42.56 29.55 68.60 2.03 44.58 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 C 0.06 1.77 1.66 44.94 0.07 1.84 16 28 H 0.06 2.54 5.36 -2.39 -0.01 2.53 16 29 C -0.14 -3.76 8.60 71.98 0.62 -3.14 16 30 H 0.07 0.63 6.43 -2.39 -0.02 0.62 16 31 H 0.07 0.63 6.43 -2.39 -0.02 0.61 16 32 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 33 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 34 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 35 H 0.07 0.79 7.55 -2.38 -0.02 0.77 16 36 H 0.09 0.78 6.43 -2.38 -0.02 0.77 16 37 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.75 6.43 -2.39 -0.02 0.73 16 40 H 0.07 0.77 7.58 -2.38 -0.02 0.75 16 41 H 0.42 7.74 6.74 -92.71 -0.63 7.12 16 42 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.08 1.70 7.73 -2.39 -0.02 1.68 16 46 H 0.03 1.08 6.00 -2.39 -0.01 1.06 16 47 H 0.08 2.11 8.06 -2.39 -0.02 2.09 16 48 H 0.11 2.98 8.06 -2.39 -0.02 2.96 16 49 H 0.11 3.09 6.32 -2.39 -0.02 3.07 16 50 H 0.40 18.41 7.90 -92.70 -0.73 17.68 16 51 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 52 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 53 H 0.05 1.43 6.24 -2.38 -0.01 1.41 16 54 H 0.08 1.78 7.39 -2.39 -0.02 1.77 16 Total: -1.00 -67.11 403.95 1.38 -65.73 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -0.45 Total: 43.24 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.42 Total: 9.30 kcal Atomic # 7 Polarization: -105.25 SS G_CDS: -6.54 Total: -111.78 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -0.08 Total: -51.07 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -67.11 1.38 -65.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734464721.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.284 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds