Wall clock time and date at job start Sat Apr 11 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47104 * 2 1 4 4 C 1.52998 * 109.47167 * 239.99784 * 2 1 3 5 5 C 1.53003 * 109.47001 * 120.00089 * 2 1 3 6 6 C 1.50698 * 109.47005 * 59.99731 * 5 2 1 7 7 O 1.21277 * 120.00495 * 0.02562 * 6 5 2 8 8 N 1.34782 * 119.99975 * 179.97438 * 6 5 2 9 9 C 1.46495 * 120.00270 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47250 * 180.02562 * 9 8 6 11 11 H 1.08994 * 109.50571 * 55.07644 * 10 9 8 12 12 C 1.53122 * 109.49918 * 294.99709 * 10 9 8 13 13 C 1.53121 * 109.15829 * 182.40438 * 12 10 9 14 14 C 1.53033 * 109.27596 * 57.65599 * 13 12 10 15 15 N 1.46842 * 109.52768 * 300.81727 * 14 13 12 16 16 C 1.46906 * 111.00553 * 185.83914 * 15 14 13 17 17 C 1.50698 * 109.46688 * 66.04622 * 16 15 14 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99634 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00399 * 0.02562 * 20 19 17 22 22 C 1.38954 * 120.00062 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99693 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00141 * 179.72913 * 22 20 19 25 25 H 1.48502 * 109.47314 * 180.27179 * 24 22 20 26 26 H 1.48506 * 109.46947 * 300.27161 * 24 22 20 27 27 H 1.48493 * 109.47595 * 60.27030 * 24 22 20 28 28 C 1.46850 * 111.19472 * 61.74294 * 15 14 13 29 29 H 1.08993 * 109.47293 * 300.00446 * 1 2 3 30 30 H 1.09004 * 109.46660 * 60.00167 * 1 2 3 31 31 H 1.08995 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46745 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46983 * 299.99597 * 3 2 1 34 34 H 1.08995 * 109.46962 * 59.99890 * 3 2 1 35 35 H 1.08997 * 109.47690 * 300.00102 * 4 2 1 36 36 H 1.09004 * 109.47290 * 60.00436 * 4 2 1 37 37 H 1.09006 * 109.47009 * 180.02562 * 4 2 1 38 38 H 1.09003 * 109.46864 * 300.00340 * 5 2 1 39 39 H 1.08998 * 109.47192 * 180.02562 * 5 2 1 40 40 H 0.97005 * 119.99473 * 0.02562 * 8 6 5 41 41 H 1.09000 * 109.47138 * 59.99809 * 9 8 6 42 42 H 1.09006 * 109.47194 * 300.00268 * 9 8 6 43 43 H 1.09005 * 109.52250 * 62.50292 * 12 10 9 44 44 H 1.08999 * 109.52549 * 302.30984 * 12 10 9 45 45 H 1.09004 * 109.50110 * 297.71716 * 13 12 10 46 46 H 1.08994 * 109.50231 * 177.59972 * 13 12 10 47 47 H 1.09009 * 109.46358 * 180.80241 * 14 13 12 48 48 H 1.09001 * 109.45537 * 60.83793 * 14 13 12 49 49 H 1.09003 * 109.46625 * 306.05204 * 16 15 14 50 50 H 1.08993 * 109.47154 * 186.05347 * 16 15 14 51 51 H 0.96991 * 120.00493 * 0.02562 * 19 17 16 52 52 H 0.97005 * 120.00032 * 359.72836 * 23 22 20 53 53 H 1.09004 * 109.46052 * 58.27591 * 28 15 14 54 54 H 1.09006 * 109.46415 * 178.24003 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5376 -2.1421 1.2492 7 8 0.8407 -2.5389 0.3395 8 7 1.8635 -2.9721 2.2598 9 6 1.3756 -4.3535 2.2596 10 6 1.8855 -5.0747 3.5089 11 1 1.5959 -4.5131 4.3970 12 6 3.4116 -5.1845 3.4486 13 6 3.9084 -5.9598 4.6721 14 6 3.2441 -7.3381 4.7006 15 7 1.7855 -7.1790 4.7589 16 6 1.1204 -8.4780 4.9270 17 6 1.4725 -9.0518 6.2752 18 8 2.2051 -8.4387 7.0227 19 7 0.9726 -10.2457 6.6508 20 6 1.2925 -10.7675 7.8776 21 1 1.9448 -10.2217 8.5432 22 6 0.7776 -11.9987 8.2647 23 7 -0.0165 -12.6627 7.4550 24 14 1.2195 -12.7132 9.9331 25 1 0.5515 -14.0288 10.1009 26 1 2.6913 -12.8904 10.0215 27 1 0.7673 -11.7884 11.0032 28 6 1.2800 -6.4788 3.5712 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2074 -2.1392 37 1 3.1301 -0.7217 -1.2489 38 1 1.6765 -0.2075 2.1392 39 1 3.1300 -0.7209 1.2495 40 1 2.4213 -2.6548 2.9873 41 1 1.7390 -4.8670 1.3694 42 1 0.2856 -4.3538 2.2597 43 1 3.8489 -4.1861 3.4478 44 1 3.7033 -5.7117 2.5403 45 1 3.6504 -5.4126 5.5789 46 1 4.9902 -6.0783 4.6131 47 1 3.5848 -7.8874 5.5784 48 1 3.5137 -7.8898 3.8000 49 1 1.4520 -9.1600 4.1440 50 1 0.0407 -8.3448 4.8594 51 1 0.3865 -10.7358 6.0533 52 1 -0.2463 -12.2915 6.5888 53 1 1.5587 -7.0346 2.6759 54 1 0.1940 -6.4038 3.6285 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752777118.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:05 Heat of formation + Delta-G solvation = -114.694560 kcal Electronic energy + Delta-G solvation = -29773.500049 eV Core-core repulsion = 25743.282923 eV Total energy + Delta-G solvation = -4030.217126 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.24517 -40.74229 -39.50787 -37.62836 -36.50517 -35.95722 -34.10338 -33.09638 -32.42710 -29.62891 -28.86103 -28.08172 -28.00009 -26.53525 -26.27515 -24.08143 -22.95563 -21.65748 -21.35067 -20.70857 -19.94879 -19.78773 -18.14937 -17.86904 -17.17545 -16.82453 -16.58340 -16.38829 -16.26649 -15.63836 -15.55264 -15.44121 -15.29845 -15.24488 -15.00322 -14.95935 -14.66637 -14.01694 -13.77653 -13.64647 -13.50798 -13.33214 -13.09308 -12.94147 -12.89835 -12.85288 -12.64976 -12.63525 -12.21575 -12.06729 -11.98585 -11.91972 -11.88505 -11.65449 -11.63252 -11.57232 -11.50747 -11.35476 -11.28196 -10.44152 -10.29349 -10.08777 -9.97025 -9.25195 -8.91997 -6.05738 1.52895 1.54507 1.73980 1.82601 2.01402 2.21152 2.41522 2.72217 3.16813 3.24313 3.68697 3.76143 3.78433 3.86861 3.92261 3.97278 4.09963 4.19675 4.28583 4.31246 4.36491 4.40076 4.45393 4.51831 4.60449 4.62353 4.68777 4.69806 4.71922 4.75919 4.87499 4.88180 4.92319 5.00324 5.00680 5.06271 5.11212 5.15849 5.19663 5.22519 5.29685 5.39986 5.42968 5.51183 5.55231 5.60181 5.72770 5.94465 5.99403 6.19403 6.58828 6.63880 6.76257 7.37641 7.45370 7.94389 8.55622 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.034425 B = 0.001645 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.163119 B =17012.873033 C =17327.299223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.053 4.053 3 C -0.138 4.138 4 C -0.151 4.151 5 C -0.129 4.129 6 C 0.507 3.493 7 O -0.568 6.568 8 N -0.720 5.720 9 C 0.136 3.864 10 C -0.083 4.083 11 H 0.084 0.916 12 C -0.106 4.106 13 C -0.107 4.107 14 C 0.051 3.949 15 N -0.530 5.530 16 C 0.057 3.943 17 C 0.446 3.554 18 O -0.606 6.606 19 N -0.589 5.589 20 C -0.409 4.409 21 H 0.074 0.926 22 C -0.043 4.043 23 N -0.918 5.918 24 Si 1.134 2.866 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.273 1.273 28 C 0.062 3.938 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.413 0.587 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.087 0.913 44 H 0.063 0.937 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.056 0.944 48 H 0.028 0.972 49 H 0.064 0.936 50 H 0.110 0.890 51 H 0.383 0.617 52 H 0.259 0.741 53 H 0.041 0.959 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 25.205 -15.774 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.054 4.054 3 C -0.195 4.195 4 C -0.208 4.208 5 C -0.168 4.168 6 C 0.296 3.704 7 O -0.448 6.448 8 N -0.373 5.373 9 C 0.011 3.989 10 C -0.102 4.102 11 H 0.102 0.898 12 C -0.143 4.143 13 C -0.145 4.145 14 C -0.077 4.077 15 N -0.255 5.255 16 C -0.074 4.074 17 C 0.234 3.766 18 O -0.491 6.491 19 N -0.228 5.228 20 C -0.538 4.538 21 H 0.092 0.908 22 C -0.241 4.241 23 N -0.557 5.557 24 Si 0.954 3.046 25 H -0.198 1.198 26 H -0.198 1.198 27 H -0.198 1.198 28 C -0.066 4.066 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.075 0.925 48 H 0.047 0.953 49 H 0.082 0.918 50 H 0.128 0.872 51 H 0.217 0.783 52 H 0.069 0.931 53 H 0.060 0.940 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 4.990 24.303 -14.502 28.738 hybrid contribution 0.099 0.199 -1.627 1.642 sum 5.089 24.503 -16.129 29.773 Atomic orbital electron populations 1.22061 0.95213 1.02468 1.01144 1.20290 0.95505 0.95571 0.93983 1.21858 1.01456 0.93943 1.02291 1.22057 1.00428 1.01447 0.96888 1.21839 1.03601 0.90582 1.00823 1.21222 0.79524 0.88728 0.80975 1.90594 1.39345 1.78117 1.36791 1.46004 1.53795 1.11777 1.25739 1.21118 0.98698 0.81748 0.97292 1.21262 0.96114 0.95014 0.97824 0.89762 1.21619 0.94125 1.01184 0.97396 1.21489 0.99617 0.94312 0.99059 1.22188 0.87103 0.98727 0.99682 1.61435 1.05426 1.18673 1.39963 1.21722 1.01166 0.91311 0.93233 1.20741 0.83841 0.81795 0.90273 1.90466 1.40976 1.61225 1.56467 1.42007 1.45115 1.18652 1.17068 1.20515 1.31995 1.06140 0.95146 0.90834 1.27817 0.94256 0.93241 1.08781 1.70974 1.34681 1.40045 1.10020 0.82626 0.76736 0.75922 0.69352 1.19800 1.19825 1.19835 1.22106 1.00201 0.94195 0.90126 0.92758 0.93243 0.92322 0.91662 0.92615 0.91771 0.92308 0.93265 0.92638 0.87019 0.86811 0.75009 0.92100 0.92200 0.89467 0.91823 0.92216 0.90508 0.92531 0.95344 0.91783 0.87223 0.78277 0.93061 0.94042 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.18 71.98 0.59 -1.80 16 2 C -0.05 -0.66 0.77 -52.18 -0.04 -0.70 16 3 C -0.14 -1.18 8.47 71.98 0.61 -0.57 16 4 C -0.15 -2.32 8.18 71.98 0.59 -1.73 16 5 C -0.13 -1.26 4.77 29.85 0.14 -1.12 16 6 C 0.51 8.19 7.24 87.66 0.63 8.82 16 7 O -0.57 -13.63 11.35 -3.02 -0.03 -13.67 16 8 N -0.72 -9.42 5.31 -463.06 -2.46 -11.88 16 9 C 0.14 2.22 5.07 86.38 0.44 2.66 16 10 C -0.08 -1.46 2.39 -10.74 -0.03 -1.49 16 11 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.11 -1.75 5.13 30.68 0.16 -1.59 16 13 C -0.11 -2.50 6.09 30.65 0.19 -2.31 16 14 C 0.05 1.59 5.11 86.33 0.44 2.03 16 15 N -0.53 -16.59 4.39 -900.91 -3.96 -20.55 16 16 C 0.06 1.96 5.45 85.56 0.47 2.43 16 17 C 0.45 21.22 7.46 87.66 0.65 21.87 16 18 O -0.61 -33.38 13.92 -3.07 -0.04 -33.42 16 19 N -0.59 -30.12 5.28 -306.98 -1.62 -31.74 16 20 C -0.41 -23.45 9.68 84.04 0.81 -22.64 16 21 H 0.07 4.52 7.16 -2.91 -0.02 4.50 16 22 C -0.04 -2.34 5.50 84.93 0.47 -1.87 16 23 N -0.92 -51.53 13.68 21.66 0.30 -51.24 16 24 Si 1.13 48.68 29.92 68.60 2.05 50.73 16 25 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 C 0.06 1.39 4.74 86.32 0.41 1.80 16 29 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.06 1.25 5.51 -2.39 -0.01 1.24 16 32 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 1.23 5.51 -2.39 -0.01 1.22 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.71 8.14 -2.38 -0.02 0.70 16 38 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.41 3.30 7.67 -92.70 -0.71 2.59 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.09 1.01 7.25 -2.38 -0.02 1.00 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.06 2.30 5.80 -2.38 -0.01 2.28 16 48 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.06 2.00 8.12 -2.39 -0.02 1.98 16 50 H 0.11 3.31 7.98 -2.39 -0.02 3.29 16 51 H 0.38 18.06 6.73 -92.72 -0.62 17.44 16 52 H 0.26 14.06 6.78 -92.70 -0.63 13.43 16 53 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 54 H 0.08 1.75 8.01 -2.38 -0.02 1.74 16 Total: -1.00 -74.22 414.34 0.46 -73.77 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -0.31 Total: 34.22 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 6.53 Total: 3.78 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -7.74 Total: -115.41 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.08 Total: -47.08 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.05 Total: 50.73 kcal Total: -74.22 0.46 -73.77 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752777118.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.927 kcal (2) G-P(sol) polarization free energy of solvation -74.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds