Wall clock time and date at job start Sat Apr 11 2020 05:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47181 * 2 1 4 4 C 1.53004 * 109.47234 * 239.99545 * 2 1 3 5 5 C 1.53005 * 109.47078 * 119.99947 * 2 1 3 6 6 C 1.50698 * 109.47042 * 60.00011 * 5 2 1 7 7 O 1.21276 * 120.00564 * 0.02562 * 6 5 2 8 8 N 1.34784 * 119.99966 * 179.97438 * 6 5 2 9 9 C 1.46928 * 120.62829 * 359.97438 * 8 6 5 10 10 C 1.53191 * 108.77343 * 126.41175 * 9 8 6 11 11 C 1.53039 * 109.31416 * 54.63452 * 10 9 8 12 12 C 1.53070 * 109.65812 * 298.69913 * 11 10 9 13 13 H 1.08997 * 109.38860 * 301.27396 * 12 11 10 14 14 C 1.52997 * 109.62317 * 181.16862 * 12 11 10 15 15 N 1.46899 * 109.47451 * 65.10514 * 14 12 11 16 16 C 1.46897 * 111.00629 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47216 * 180.02562 * 16 15 14 18 18 O 1.21291 * 120.00118 * 0.02562 * 17 16 15 19 19 N 1.34782 * 119.99776 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99685 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00574 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99700 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99671 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99879 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47237 * 60.00072 * 24 22 20 26 26 H 1.48499 * 109.47056 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47212 * 300.00325 * 24 22 20 28 28 C 1.46919 * 120.63188 * 179.97438 * 8 6 5 29 29 H 1.08995 * 109.47000 * 299.99743 * 1 2 3 30 30 H 1.08995 * 109.47314 * 60.00522 * 1 2 3 31 31 H 1.09005 * 109.47076 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46784 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.46905 * 299.99668 * 3 2 1 34 34 H 1.08990 * 109.46836 * 59.99739 * 3 2 1 35 35 H 1.09000 * 109.47028 * 300.00461 * 4 2 1 36 36 H 1.09004 * 109.46562 * 60.00165 * 4 2 1 37 37 H 1.09000 * 109.46959 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.46893 * 299.99621 * 5 2 1 39 39 H 1.09005 * 109.46961 * 179.97438 * 5 2 1 40 40 H 1.08998 * 109.58787 * 246.20220 * 9 8 6 41 41 H 1.09007 * 109.58600 * 6.48533 * 9 8 6 42 42 H 1.09002 * 109.49529 * 174.58688 * 10 9 8 43 43 H 1.09001 * 109.49774 * 294.68244 * 10 9 8 44 44 H 1.09007 * 109.45640 * 58.65727 * 11 10 9 45 45 H 1.09000 * 109.45893 * 178.62518 * 11 10 9 46 46 H 1.08994 * 109.47376 * 185.11216 * 14 12 11 47 47 H 1.09007 * 109.47311 * 305.10536 * 14 12 11 48 48 H 1.00903 * 110.99800 * 303.96230 * 15 14 12 49 49 H 1.09002 * 109.46975 * 300.00290 * 16 15 14 50 50 H 1.09000 * 109.46669 * 59.99860 * 16 15 14 51 51 H 0.97000 * 119.99961 * 0.02562 * 19 17 16 52 52 H 0.97004 * 119.99074 * 179.97438 * 23 22 20 53 53 H 1.09002 * 109.58751 * 353.37646 * 28 8 6 54 54 H 1.08996 * 109.58750 * 113.65831 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0400 -0.7213 1.2493 6 6 1.5377 -2.1421 1.2493 7 8 0.8408 -2.5389 0.3395 8 7 1.8637 -2.9721 2.2599 9 6 2.7084 -2.5064 3.3682 10 6 1.9883 -2.7907 4.6901 11 6 1.6235 -4.2753 4.7587 12 6 0.6772 -4.6268 3.6080 13 1 -0.2194 -4.0107 3.6758 14 6 0.2900 -6.1044 3.6943 15 7 -0.4896 -6.3358 4.9177 16 6 -0.8794 -7.7473 5.0347 17 6 -1.6761 -7.9453 6.2984 18 8 -1.8979 -7.0032 7.0294 19 7 -2.1422 -9.1693 6.6163 20 6 -2.8666 -9.3496 7.7662 21 1 -3.0641 -8.5107 8.4171 22 6 -3.3476 -10.6114 8.0937 23 7 -3.1077 -11.6320 7.3013 24 14 -4.3352 -10.8569 9.6601 25 1 -5.5536 -10.0091 9.6151 26 1 -4.7287 -12.2839 9.7786 27 1 -3.5081 -10.4730 10.8320 28 6 1.3812 -4.3597 2.2742 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4424 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 1.6767 -0.2074 2.1392 39 1 3.1301 -0.7217 1.2490 40 1 3.6607 -3.0364 3.3495 41 1 2.8843 -1.4353 3.2685 42 1 2.6442 -2.5383 5.5233 43 1 1.0804 -2.1900 4.7463 44 1 2.5295 -4.8760 4.6777 45 1 1.1326 -4.4851 5.7091 46 1 -0.3095 -6.3743 2.8249 47 1 1.1922 -6.7158 3.7173 48 1 0.0202 -6.0328 5.7340 49 1 -1.4869 -8.0289 4.1746 50 1 0.0150 -8.3696 5.0672 51 1 -1.9645 -9.9228 6.0318 52 1 -3.4432 -12.5130 7.5302 53 1 0.6793 -4.5111 1.4540 54 1 2.2247 -5.0411 2.1637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752791424.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:10 Heat of formation + Delta-G solvation = -113.516015 kcal Electronic energy + Delta-G solvation = -29826.065192 eV Core-core repulsion = 25795.899172 eV Total energy + Delta-G solvation = -4030.166020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50642 -40.21141 -39.31535 -37.33530 -36.68680 -35.87758 -33.84346 -33.24741 -32.51783 -29.81905 -28.48677 -28.09117 -28.00313 -26.66658 -26.13721 -24.56654 -23.16546 -21.44985 -21.08027 -20.36529 -19.91828 -19.35715 -18.19520 -17.79465 -17.07105 -16.78565 -16.59520 -16.42294 -16.06573 -15.69810 -15.46643 -15.38517 -15.23322 -15.13426 -14.95129 -14.66843 -14.29046 -14.25049 -13.98111 -13.64741 -13.52156 -13.18719 -13.07330 -12.95224 -12.90553 -12.86730 -12.78356 -12.64454 -12.44100 -12.23693 -12.12894 -12.10211 -12.00587 -11.74587 -11.64470 -11.51907 -11.51337 -11.48467 -11.28165 -10.40912 -10.33859 -10.02952 -9.56048 -9.32645 -8.47384 -5.96490 1.39409 1.41347 1.52485 1.68783 2.03481 2.04301 2.28912 2.93064 3.19649 3.51970 3.56089 3.73576 3.83294 3.87233 3.93920 3.98355 4.15689 4.23769 4.28007 4.33782 4.40722 4.46729 4.52763 4.55875 4.56783 4.61720 4.65867 4.67247 4.73818 4.84827 4.85574 4.87392 4.87743 4.89385 5.00135 5.09772 5.12995 5.17665 5.18993 5.25716 5.30489 5.38757 5.39664 5.45080 5.54609 5.55739 5.68734 5.88203 6.09516 6.40580 6.50011 6.58931 7.11173 7.28233 7.54630 8.09853 8.69689 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027355 B = 0.001674 C = 0.001656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.343402 B =16726.791326 C =16901.101863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.053 4.053 3 C -0.137 4.137 4 C -0.150 4.150 5 C -0.126 4.126 6 C 0.506 3.494 7 O -0.569 6.569 8 N -0.613 5.613 9 C 0.105 3.895 10 C -0.130 4.130 11 C -0.118 4.118 12 C -0.088 4.088 13 H 0.057 0.943 14 C 0.068 3.932 15 N -0.684 5.684 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.270 1.270 28 C 0.123 3.877 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.055 0.945 44 H 0.075 0.925 45 H 0.055 0.945 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.345 0.655 49 H 0.101 0.899 50 H 0.069 0.931 51 H 0.397 0.603 52 H 0.278 0.722 53 H 0.071 0.929 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.318 21.557 -13.741 31.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.054 4.054 3 C -0.194 4.194 4 C -0.207 4.207 5 C -0.165 4.165 6 C 0.297 3.703 7 O -0.450 6.450 8 N -0.345 5.345 9 C -0.017 4.017 10 C -0.168 4.168 11 C -0.156 4.156 12 C -0.108 4.108 13 H 0.076 0.924 14 C -0.061 4.061 15 N -0.318 5.318 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.209 5.209 20 C -0.466 4.466 21 H 0.097 0.903 22 C -0.212 4.212 23 N -0.560 5.560 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.001 4.001 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.127 0.873 39 H 0.134 0.866 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.066 0.934 48 H 0.165 0.835 49 H 0.119 0.881 50 H 0.087 0.913 51 H 0.230 0.770 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.173 21.956 -14.008 31.196 hybrid contribution -0.119 -1.386 0.712 1.563 sum 17.053 20.570 -13.296 29.845 Atomic orbital electron populations 1.22061 0.95496 1.02304 1.01062 1.20308 0.95274 0.95751 0.94022 1.21847 1.01571 0.93707 1.02293 1.22044 1.00505 1.01358 0.96794 1.21864 1.03549 0.90452 1.00656 1.21309 0.79397 0.88749 0.80840 1.90581 1.39602 1.77910 1.36860 1.48271 1.51207 1.11791 1.23255 1.22012 0.93273 1.02041 0.84379 1.21879 1.01197 0.95640 0.98112 1.21605 0.99081 0.97442 0.97485 1.21348 0.98446 0.95497 0.95477 0.92432 1.21949 0.95984 0.95791 0.92353 1.60066 1.48075 1.17619 1.06040 1.21529 0.98979 0.90710 0.95575 1.20875 0.84594 0.82806 0.89311 1.90482 1.63688 1.41843 1.55024 1.41928 1.47938 1.08841 1.22228 1.19650 1.30725 0.95510 1.00751 0.90298 1.26061 0.98625 0.94282 1.02277 1.69674 1.46495 1.00914 1.38937 0.84971 0.78244 0.77549 0.77458 1.19844 1.19417 1.19563 1.21414 0.99041 0.82712 0.96931 0.93017 0.93121 0.92619 0.91370 0.92588 0.91837 0.92468 0.93216 0.92400 0.87306 0.86558 0.89552 0.87280 0.88557 0.92585 0.90590 0.92628 0.90963 0.93409 0.83497 0.88127 0.91349 0.76956 0.91267 0.91005 0.90129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.18 71.98 0.59 -2.16 16 2 C -0.05 -0.74 0.77 -52.18 -0.04 -0.78 16 3 C -0.14 -1.26 8.47 71.98 0.61 -0.65 16 4 C -0.15 -2.44 8.18 71.98 0.59 -1.85 16 5 C -0.13 -1.44 3.11 29.85 0.09 -1.35 16 6 C 0.51 9.57 7.11 87.66 0.62 10.19 16 7 O -0.57 -15.21 10.76 -3.02 -0.03 -15.24 16 8 N -0.61 -9.94 2.97 -818.97 -2.44 -12.38 16 9 C 0.10 0.99 6.34 86.36 0.55 1.54 16 10 C -0.13 -1.62 6.08 30.67 0.19 -1.43 16 11 C -0.12 -2.04 4.97 30.63 0.15 -1.88 16 12 C -0.09 -1.83 2.55 -10.72 -0.03 -1.86 16 13 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 14 C 0.07 1.61 5.15 86.30 0.44 2.05 16 15 N -0.68 -22.00 6.12 -517.95 -3.17 -25.18 16 16 C 0.06 2.26 6.17 85.56 0.53 2.79 16 17 C 0.44 21.17 7.82 87.65 0.69 21.86 16 18 O -0.62 -35.15 15.78 -3.06 -0.05 -35.19 16 19 N -0.57 -29.80 5.29 -306.98 -1.62 -31.43 16 20 C -0.34 -19.36 9.68 84.04 0.81 -18.55 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 23 N -0.92 -49.92 13.05 21.67 0.28 -49.64 16 24 Si 0.99 43.18 29.55 68.60 2.03 45.20 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 27 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 28 C 0.12 2.31 5.71 86.35 0.49 2.80 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.36 5.51 -2.38 -0.01 1.35 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 1.28 5.51 -2.39 -0.01 1.26 16 36 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 38 H 0.11 0.91 7.70 -2.39 -0.02 0.90 16 39 H 0.12 0.76 7.94 -2.38 -0.02 0.74 16 40 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.11 0.51 5.93 -2.38 -0.01 0.50 16 42 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 45 H 0.06 1.19 6.64 -2.39 -0.02 1.17 16 46 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 48 H 0.35 11.40 6.68 -89.69 -0.60 10.80 16 49 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 50 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 51 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 52 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 53 H 0.07 1.69 7.01 -2.39 -0.02 1.67 16 54 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -72.83 415.33 1.31 -71.52 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -0.44 Total: 41.83 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.75 Total: 10.50 kcal Atomic # 7 Polarization: -111.67 SS G_CDS: -6.95 Total: -118.61 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.08 Total: -50.44 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.83 1.31 -71.52 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752791424.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.000 kcal (2) G-P(sol) polarization free energy of solvation -72.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds