Wall clock time and date at job start Sat Apr 11 2020 05:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47114 * 2 1 4 4 C 1.53000 * 109.47442 * 239.99726 * 2 1 3 5 5 C 1.53006 * 109.46978 * 119.99675 * 2 1 3 6 6 C 1.50699 * 109.46981 * 59.99845 * 5 2 1 7 7 O 1.21280 * 120.00305 * 0.02562 * 6 5 2 8 8 N 1.34770 * 120.00089 * 179.97438 * 6 5 2 9 9 C 1.46505 * 120.00338 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47160 * 180.02562 * 9 8 6 11 11 O 1.21277 * 120.00027 * 0.02562 * 10 9 8 12 12 N 1.34778 * 119.99869 * 180.02562 * 10 9 8 13 13 C 1.46931 * 120.63197 * 359.97438 * 12 10 9 14 14 C 1.53185 * 108.77371 * 126.41375 * 13 12 10 15 15 C 1.53040 * 109.33812 * 54.62364 * 14 13 12 16 16 C 1.53035 * 109.53826 * 298.68006 * 15 14 13 17 17 H 1.08999 * 109.49811 * 301.34817 * 16 15 14 18 18 C 1.53004 * 109.49622 * 181.28719 * 16 15 14 19 19 N 1.46504 * 109.46932 * 175.06639 * 18 16 15 20 20 C 1.36934 * 119.99567 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00537 * 359.97438 * 20 19 18 22 22 C 1.38811 * 119.99798 * 179.97438 * 20 19 18 23 23 N 1.31624 * 120.00134 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00229 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47228 * 179.97438 * 24 22 20 26 26 H 1.48501 * 109.46793 * 299.99987 * 24 22 20 27 27 H 1.48500 * 109.47000 * 60.00079 * 24 22 20 28 28 C 1.46928 * 120.63291 * 180.02562 * 12 10 9 29 29 H 1.09003 * 109.47434 * 300.00446 * 1 2 3 30 30 H 1.09008 * 109.46891 * 60.00087 * 1 2 3 31 31 H 1.08996 * 109.47398 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46703 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.46972 * 299.99235 * 3 2 1 34 34 H 1.08994 * 109.47406 * 59.99756 * 3 2 1 35 35 H 1.09003 * 109.46818 * 299.99991 * 4 2 1 36 36 H 1.08994 * 109.46946 * 60.00081 * 4 2 1 37 37 H 1.08998 * 109.47158 * 180.02562 * 4 2 1 38 38 H 1.09003 * 109.46939 * 300.00182 * 5 2 1 39 39 H 1.08998 * 109.47446 * 180.02562 * 5 2 1 40 40 H 0.97005 * 119.99979 * 0.02562 * 8 6 5 41 41 H 1.09003 * 109.46726 * 60.00850 * 9 8 6 42 42 H 1.08998 * 109.47241 * 300.00985 * 9 8 6 43 43 H 1.08999 * 109.58771 * 246.20614 * 13 12 10 44 44 H 1.08999 * 109.58324 * 6.48486 * 13 12 10 45 45 H 1.09002 * 109.49868 * 174.58798 * 14 13 12 46 46 H 1.08999 * 109.50437 * 294.68172 * 14 13 12 47 47 H 1.09001 * 109.48261 * 178.63967 * 15 14 13 48 48 H 1.09002 * 109.43478 * 58.68575 * 15 14 13 49 49 H 1.08998 * 109.47524 * 55.06283 * 18 16 15 50 50 H 1.08997 * 109.47093 * 295.06183 * 18 16 15 51 51 H 0.97000 * 119.99825 * 359.97438 * 19 18 16 52 52 H 0.97005 * 119.99717 * 0.02562 * 23 22 20 53 53 H 1.09002 * 109.58664 * 113.79351 * 28 12 10 54 54 H 1.09001 * 109.69827 * 353.43978 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5375 -2.1420 1.2494 7 8 0.8407 -2.5389 0.3396 8 7 1.8635 -2.9720 2.2599 9 6 1.3746 -4.3530 2.2603 10 6 1.8770 -5.0634 3.4908 11 8 2.5743 -4.4740 4.2890 12 7 1.5514 -6.3537 3.7041 13 6 0.7071 -7.0810 2.7464 14 6 1.4277 -8.3675 2.3317 15 6 1.7931 -9.1696 3.5828 16 6 2.7392 -8.3466 4.4601 17 1 3.6351 -8.0949 3.8925 18 6 3.1293 -9.1618 5.6948 19 7 4.1253 -8.4218 6.4737 20 6 4.6260 -8.9576 7.6301 21 1 4.2864 -9.9255 7.9682 22 6 5.5701 -8.2567 8.3680 23 7 5.9843 -7.0773 7.9558 24 14 6.2527 -8.9873 9.9459 25 1 7.2381 -8.0488 10.5402 26 1 5.1432 -9.2147 10.9065 27 1 6.9197 -10.2795 9.6450 28 6 2.0331 -7.0597 4.8993 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6767 -0.2075 -2.1391 37 1 3.1300 -0.7217 -1.2489 38 1 1.6765 -0.2073 2.1393 39 1 3.1299 -0.7209 1.2496 40 1 2.4212 -2.6547 2.9875 41 1 1.7373 -4.8670 1.3702 42 1 0.2846 -4.3527 2.2609 43 1 -0.2452 -7.3301 3.2146 44 1 0.5311 -6.4590 1.8688 45 1 0.7721 -8.9631 1.6964 46 1 2.3355 -8.1156 1.7835 47 1 2.2846 -10.0972 3.2893 48 1 0.8871 -9.4005 4.1431 49 1 3.5499 -10.1173 5.3814 50 1 2.2457 -9.3374 6.3082 51 1 4.4300 -7.5523 6.1703 52 1 5.6296 -6.6978 7.1366 53 1 1.1887 -7.3071 5.5427 54 1 2.7335 -6.4257 5.4431 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752813110.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:19 Heat of formation + Delta-G solvation = -102.629153 kcal Electronic energy + Delta-G solvation = -30231.791031 eV Core-core repulsion = 26202.097100 eV Total energy + Delta-G solvation = -4029.693931 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.70608 -40.92724 -39.08130 -37.54011 -36.92511 -35.49635 -34.68401 -33.13149 -31.57390 -30.49939 -28.30156 -28.07670 -28.00498 -26.87267 -25.91237 -25.00955 -22.86974 -21.90154 -21.55772 -20.44549 -19.73024 -19.37156 -18.60025 -17.76118 -17.30810 -17.12043 -16.76367 -16.36523 -16.16795 -15.95151 -15.75850 -15.39835 -15.30508 -15.26013 -15.14661 -14.77039 -14.44222 -14.23191 -14.04699 -13.86005 -13.69798 -13.65707 -13.07674 -12.95810 -12.93103 -12.71412 -12.65784 -12.55667 -12.21774 -12.14654 -12.03713 -11.94355 -11.93126 -11.77281 -11.63115 -11.57932 -11.52783 -11.22428 -11.01788 -10.96080 -10.54067 -10.19760 -9.77967 -9.14881 -8.43126 -5.37216 1.35840 1.55756 1.60855 1.62003 1.66898 1.83139 2.28600 2.69864 3.24840 3.37205 3.58457 3.70067 3.77995 3.79348 3.84825 3.94410 4.00786 4.04390 4.17390 4.21830 4.24195 4.33079 4.35042 4.53328 4.60650 4.63816 4.65648 4.67380 4.72086 4.80276 4.82159 4.85799 4.88250 4.92543 5.00594 5.02357 5.10398 5.12959 5.15280 5.18687 5.25002 5.33074 5.37167 5.39899 5.42168 5.55066 5.55142 5.66737 6.23740 6.43905 6.43942 6.92074 7.05217 7.18659 7.95342 8.07561 9.08052 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014251 B = 0.002180 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.239226 B =12842.658452 C =14433.210007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.052 4.052 3 C -0.139 4.139 4 C -0.151 4.151 5 C -0.132 4.132 6 C 0.517 3.483 7 O -0.555 6.555 8 N -0.724 5.724 9 C 0.112 3.888 10 C 0.500 3.500 11 O -0.581 6.581 12 N -0.602 5.602 13 C 0.096 3.904 14 C -0.127 4.127 15 C -0.107 4.107 16 C -0.095 4.095 17 H 0.051 0.949 18 C 0.163 3.837 19 N -0.759 5.759 20 C -0.336 4.336 21 H 0.070 0.930 22 C -0.109 4.109 23 N -0.975 5.975 24 Si 1.131 2.869 25 H -0.294 1.294 26 H -0.275 1.275 27 H -0.275 1.275 28 C 0.129 3.871 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.412 0.588 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.059 0.941 47 H 0.074 0.926 48 H 0.079 0.921 49 H 0.024 0.976 50 H 0.026 0.974 51 H 0.357 0.643 52 H 0.240 0.760 53 H 0.072 0.928 54 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.372 8.946 -20.173 26.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.053 4.053 3 C -0.197 4.197 4 C -0.208 4.208 5 C -0.172 4.172 6 C 0.305 3.695 7 O -0.434 6.434 8 N -0.379 5.379 9 C -0.015 4.015 10 C 0.289 3.711 11 O -0.461 6.461 12 N -0.334 5.334 13 C -0.025 4.025 14 C -0.165 4.165 15 C -0.145 4.145 16 C -0.115 4.115 17 H 0.070 0.930 18 C 0.036 3.964 19 N -0.404 5.404 20 C -0.467 4.467 21 H 0.088 0.912 22 C -0.300 4.300 23 N -0.623 5.623 24 Si 0.955 3.045 25 H -0.220 1.220 26 H -0.201 1.201 27 H -0.201 1.201 28 C 0.006 3.994 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.249 0.751 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.111 0.889 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.042 0.958 50 H 0.044 0.956 51 H 0.189 0.811 52 H 0.051 0.949 53 H 0.091 0.909 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.577 8.956 -19.081 25.628 hybrid contribution -0.278 0.099 -0.648 0.712 sum -14.855 9.055 -19.730 26.304 Atomic orbital electron populations 1.22054 0.94584 1.02775 1.01315 1.20300 0.95983 0.95424 0.93556 1.21866 1.01305 0.94053 1.02431 1.22060 1.00276 1.01652 0.96820 1.21865 1.03409 0.90565 1.01317 1.21108 0.79456 0.88458 0.80439 1.90575 1.38937 1.77885 1.36035 1.45970 1.54201 1.11093 1.26597 1.21089 1.01530 0.83419 0.95434 1.21106 0.79876 0.82347 0.87816 1.90739 1.40080 1.66547 1.48721 1.48187 1.50805 1.10420 1.24032 1.22211 0.93601 0.94075 0.92577 1.21909 1.01498 0.95900 0.97228 1.21515 0.98898 0.98140 0.95949 1.21562 0.98576 0.95049 0.96271 0.92998 1.20786 0.90880 0.93852 0.90893 1.42677 1.49786 1.21147 1.26755 1.20421 1.21378 1.03414 1.01521 0.91206 1.27357 0.98355 0.96694 1.07569 1.70997 1.47534 1.18856 1.24871 0.82606 0.75855 0.74439 0.71609 1.21986 1.20131 1.20106 1.21385 0.98409 0.92920 0.86696 0.92904 0.92748 0.91861 0.92069 0.92067 0.91931 0.91881 0.92713 0.93072 0.87287 0.87502 0.75087 0.87108 0.86679 0.88885 0.87109 0.86957 0.92179 0.90752 0.90263 0.95763 0.95627 0.81075 0.94934 0.90930 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 8.18 71.98 0.59 -1.84 16 2 C -0.05 -0.77 0.77 -52.18 -0.04 -0.81 16 3 C -0.14 -1.56 8.47 71.98 0.61 -0.95 16 4 C -0.15 -2.51 8.18 71.98 0.59 -1.92 16 5 C -0.13 -1.91 4.77 29.85 0.14 -1.77 16 6 C 0.52 10.13 7.24 87.66 0.63 10.76 16 7 O -0.56 -13.11 11.35 -3.03 -0.03 -13.15 16 8 N -0.72 -14.78 5.53 -466.79 -2.58 -17.36 16 9 C 0.11 2.19 4.50 85.63 0.39 2.57 16 10 C 0.50 13.71 7.77 87.66 0.68 14.39 16 11 O -0.58 -21.74 15.08 -3.02 -0.05 -21.78 16 12 N -0.60 -14.96 2.97 -818.84 -2.43 -17.40 16 13 C 0.10 1.41 6.34 86.36 0.55 1.95 16 14 C -0.13 -1.86 6.08 30.67 0.19 -1.67 16 15 C -0.11 -2.21 5.17 30.62 0.16 -2.05 16 16 C -0.09 -2.98 2.37 -10.71 -0.03 -3.00 16 17 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 18 C 0.16 6.54 5.65 86.38 0.49 7.03 16 19 N -0.76 -40.18 5.37 -343.44 -1.85 -42.03 16 20 C -0.34 -19.63 9.99 84.03 0.84 -18.79 16 21 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 22 C -0.11 -6.59 5.50 84.86 0.47 -6.12 16 23 N -0.97 -64.16 13.70 21.65 0.30 -63.86 16 24 Si 1.13 53.40 29.92 68.60 2.05 55.45 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 C 0.13 4.20 5.52 86.37 0.48 4.68 16 29 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 1.31 5.51 -2.39 -0.01 1.29 16 32 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.06 1.33 5.51 -2.39 -0.01 1.32 16 36 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.30 16 40 H 0.41 8.91 7.44 -92.70 -0.69 8.22 16 41 H 0.11 1.88 7.69 -2.39 -0.02 1.86 16 42 H 0.12 1.84 7.94 -2.39 -0.02 1.82 16 43 H 0.09 1.07 8.14 -2.39 -0.02 1.06 16 44 H 0.11 1.08 5.93 -2.39 -0.01 1.06 16 45 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 47 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 49 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.36 20.20 5.73 -92.71 -0.53 19.67 16 52 H 0.24 16.06 6.77 -92.70 -0.63 15.43 16 53 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 54 H 0.05 2.20 6.22 -2.39 -0.01 2.18 16 Total: -1.00 -79.45 414.87 1.95 -77.51 By element: Atomic # 1 Polarization: 40.35 SS G_CDS: -0.19 Total: 40.16 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 6.73 Total: 2.47 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -6.56 Total: -140.64 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -0.08 Total: -34.93 kcal Atomic # 14 Polarization: 53.40 SS G_CDS: 2.05 Total: 55.45 kcal Total: -79.45 1.95 -77.51 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752813110.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.124 kcal (2) G-P(sol) polarization free energy of solvation -79.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds