Wall clock time and date at job start Sat Apr 11 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46749 * 2 1 4 4 C 1.53001 * 109.47030 * 119.99807 * 2 1 3 5 5 C 1.52996 * 109.46848 * 175.00349 * 4 2 1 6 6 C 1.50704 * 109.47344 * 180.02562 * 5 4 2 7 7 O 1.21276 * 119.99562 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00182 * 180.02562 * 6 5 4 9 9 C 1.46501 * 119.99924 * 180.02562 * 8 6 5 10 10 C 1.50702 * 109.47145 * 179.97438 * 9 8 6 11 11 O 1.21281 * 119.99750 * 0.02562 * 10 9 8 12 12 N 1.34766 * 120.00035 * 179.97438 * 10 9 8 13 13 C 1.46932 * 120.63298 * 0.02562 * 12 10 9 14 14 C 1.53188 * 108.89865 * 233.55481 * 13 12 10 15 15 C 1.53079 * 109.29325 * 305.58258 * 14 13 12 16 16 C 1.53030 * 109.66219 * 61.14723 * 15 14 13 17 17 H 1.09004 * 109.49984 * 58.65101 * 16 15 14 18 18 N 1.46499 * 109.52870 * 178.73068 * 16 15 14 19 19 C 1.46506 * 119.99657 * 59.85020 * 18 16 15 20 20 C 1.36931 * 120.00451 * 239.85686 * 18 16 15 21 21 H 1.08002 * 120.00034 * 22.06549 * 20 18 16 22 22 C 1.38807 * 120.00356 * 202.05763 * 20 18 16 23 23 N 1.31630 * 119.99754 * 12.42589 * 22 20 18 24 24 Si 1.86803 * 120.00573 * 192.42752 * 22 20 18 25 25 H 1.48499 * 109.46782 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47174 * 120.00014 * 24 22 20 27 27 H 1.48498 * 109.47089 * 240.00468 * 24 22 20 28 28 C 1.46927 * 120.63318 * 180.02562 * 12 10 9 29 29 H 1.09002 * 109.47484 * 299.99696 * 1 2 3 30 30 H 1.08994 * 109.47301 * 60.00272 * 1 2 3 31 31 H 1.09001 * 109.47124 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46999 * 240.00334 * 2 1 3 33 33 H 1.09007 * 109.47355 * 59.99981 * 3 2 1 34 34 H 1.09002 * 109.46984 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47509 * 299.99935 * 3 2 1 36 36 H 1.08996 * 109.47179 * 55.00463 * 4 2 1 37 37 H 1.09002 * 109.47147 * 295.00080 * 4 2 1 38 38 H 1.08998 * 109.47820 * 59.99788 * 5 4 2 39 39 H 1.09002 * 109.47027 * 299.99804 * 5 4 2 40 40 H 0.96995 * 119.99959 * 359.97438 * 8 6 5 41 41 H 1.08996 * 109.47262 * 59.99900 * 9 8 6 42 42 H 1.09002 * 109.46825 * 299.99662 * 9 8 6 43 43 H 1.08999 * 109.58484 * 353.41706 * 13 12 10 44 44 H 1.09004 * 109.58376 * 113.69358 * 13 12 10 45 45 H 1.09009 * 109.49213 * 65.38474 * 14 13 12 46 46 H 1.08998 * 109.49986 * 185.47986 * 14 13 12 47 47 H 1.08996 * 109.34181 * 301.12136 * 15 14 13 48 48 H 1.08998 * 109.44956 * 181.24009 * 15 14 13 49 49 H 1.09001 * 109.46860 * 94.30575 * 19 18 16 50 50 H 1.08991 * 109.47278 * 214.30658 * 19 18 16 51 51 H 1.09000 * 109.47307 * 334.31510 * 19 18 16 52 52 H 0.96998 * 120.00023 * 179.97438 * 23 22 20 53 53 H 1.09004 * 109.58619 * 246.16125 * 28 12 10 54 54 H 1.09000 * 109.58645 * 6.57993 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8309 1.1880 6 6 4.0672 -1.5418 2.4182 7 8 3.2828 -1.9228 3.2611 8 7 5.3881 -1.7534 2.5821 9 6 5.8764 -2.4450 3.7777 10 6 7.3783 -2.5529 3.7174 11 8 7.9815 -2.0966 2.7693 12 7 8.0513 -3.1556 4.7175 13 6 7.3346 -3.7127 5.8729 14 6 7.9361 -3.1325 7.1567 15 6 9.4457 -3.3862 7.1676 16 6 10.0935 -2.6894 5.9690 17 1 9.8866 -1.6201 6.0142 18 7 11.5417 -2.9087 5.9990 19 6 12.0773 -4.2715 5.9505 20 6 12.3947 -1.8401 6.0726 21 1 12.0437 -0.8945 6.4588 22 6 13.7106 -1.9720 5.6509 23 7 14.0773 -3.0309 4.9603 24 14 14.9611 -0.6470 6.0634 25 1 14.3008 0.4315 6.8419 26 1 16.0605 -1.2373 6.8684 27 1 15.5157 -0.0816 4.8073 28 6 9.5155 -3.2680 4.6733 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8899 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6054 -1.7198 1.2952 37 1 1.7516 -0.1583 2.1370 38 1 3.9994 0.1676 1.1420 39 1 3.8532 -1.3939 0.3003 40 1 6.0154 -1.4484 1.9081 41 1 5.4422 -3.4437 3.8225 42 1 5.5875 -1.8830 4.6659 43 1 6.2793 -3.4469 5.8111 44 1 7.4383 -4.7978 5.8786 45 1 7.7492 -2.0592 7.1932 46 1 7.4780 -3.6117 8.0220 47 1 9.6320 -4.4585 7.1086 48 1 9.8730 -2.9938 8.0904 49 1 12.3103 -4.5337 4.9185 50 1 12.9837 -4.3273 6.5531 51 1 11.3361 -4.9674 6.3436 52 1 14.9968 -3.1230 4.6653 53 1 9.7989 -4.3167 4.5828 54 1 9.8994 -2.7088 3.8200 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752998693.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:49 Heat of formation + Delta-G solvation = -90.356314 kcal Electronic energy + Delta-G solvation = -29958.686776 eV Core-core repulsion = 25929.525036 eV Total energy + Delta-G solvation = -4029.161740 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.56457 -40.58118 -38.98827 -37.47152 -36.82536 -35.53068 -34.04158 -32.84608 -32.14816 -30.81360 -28.90663 -28.06143 -27.96953 -26.22799 -25.39269 -24.65803 -23.08790 -21.49347 -21.24661 -20.74415 -19.98533 -18.86194 -18.55584 -17.75377 -17.31039 -17.07003 -16.93044 -16.44932 -16.24997 -15.69294 -15.63304 -15.31332 -15.24261 -15.10486 -14.62507 -14.51948 -14.39919 -14.26924 -14.05905 -13.82199 -13.62109 -13.49646 -13.32263 -13.03608 -12.92874 -12.85079 -12.61269 -12.51663 -12.22241 -12.20118 -12.11173 -12.08892 -11.76601 -11.68683 -11.65509 -11.49012 -11.41829 -11.39773 -11.01253 -10.95063 -10.67092 -10.24480 -9.75605 -8.78892 -7.85610 -5.33568 1.41446 1.44127 1.44621 1.54829 1.61696 1.67703 2.31318 2.49232 3.27925 3.31446 3.60031 3.73710 3.90606 3.98218 4.00954 4.04980 4.10468 4.20052 4.23412 4.26593 4.31515 4.37408 4.40396 4.57654 4.60012 4.66960 4.69842 4.78237 4.83899 4.87133 4.88949 4.93643 4.98857 5.02545 5.08776 5.15089 5.17456 5.20221 5.25536 5.26789 5.36951 5.41983 5.43902 5.51483 5.55425 5.56772 5.61443 5.71533 6.29967 6.33652 6.45680 6.98238 7.12877 7.16572 7.84631 8.26583 9.17251 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017516 B = 0.001985 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.111422 B =14101.938516 C =15073.357552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.094 4.094 5 C -0.137 4.137 6 C 0.514 3.486 7 O -0.578 6.578 8 N -0.720 5.720 9 C 0.110 3.890 10 C 0.503 3.497 11 O -0.582 6.582 12 N -0.599 5.599 13 C 0.099 3.901 14 C -0.123 4.123 15 C -0.124 4.124 16 C 0.167 3.833 17 H 0.045 0.955 18 N -0.609 5.609 19 C 0.180 3.820 20 C -0.263 4.263 21 H 0.067 0.933 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.288 1.288 27 H -0.294 1.294 28 C 0.114 3.886 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.414 0.586 41 H 0.114 0.886 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.089 0.911 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.064 0.936 48 H 0.056 0.944 49 H -0.001 1.001 50 H 0.017 0.983 51 H 0.036 0.964 52 H 0.248 0.752 53 H 0.061 0.939 54 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.274 1.500 -4.495 26.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.114 4.114 3 C -0.210 4.210 4 C -0.132 4.132 5 C -0.176 4.176 6 C 0.303 3.697 7 O -0.458 6.458 8 N -0.375 5.375 9 C -0.017 4.017 10 C 0.291 3.709 11 O -0.463 6.463 12 N -0.332 5.332 13 C -0.022 4.022 14 C -0.161 4.161 15 C -0.163 4.163 16 C 0.059 3.941 17 H 0.063 0.937 18 N -0.331 5.331 19 C 0.035 3.965 20 C -0.393 4.393 21 H 0.085 0.915 22 C -0.248 4.248 23 N -0.584 5.584 24 Si 0.796 3.204 25 H -0.192 1.192 26 H -0.215 1.215 27 H -0.221 1.221 28 C -0.011 4.011 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.252 0.748 41 H 0.132 0.868 42 H 0.129 0.871 43 H 0.132 0.868 44 H 0.107 0.893 45 H 0.082 0.918 46 H 0.127 0.873 47 H 0.083 0.917 48 H 0.075 0.925 49 H 0.017 0.983 50 H 0.035 0.965 51 H 0.054 0.946 52 H 0.057 0.943 53 H 0.079 0.921 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -26.333 1.417 -4.416 26.738 hybrid contribution 1.890 0.642 -0.286 2.017 sum -24.442 2.059 -4.701 24.975 Atomic orbital electron populations 1.21835 0.94946 1.01824 1.01934 1.21134 0.96065 0.96522 0.97670 1.21934 1.01461 0.95653 1.01906 1.21352 0.92729 1.00886 0.98254 1.21805 0.98003 1.02549 0.95288 1.21304 0.80945 0.78611 0.88833 1.90681 1.55994 1.53033 1.46043 1.45909 1.08341 1.59639 1.23637 1.21110 0.88781 1.00931 0.90897 1.21017 0.90652 0.77221 0.81963 1.90687 1.70799 1.49843 1.34950 1.48250 1.06953 1.56580 1.21386 1.22166 0.97020 0.99453 0.83578 1.21892 0.94121 1.01905 0.98197 1.21940 0.95816 1.00790 0.97786 1.20786 0.82941 0.97393 0.92995 0.93660 1.44164 1.00578 1.02812 1.85551 1.20493 0.94748 0.83792 0.97451 1.19563 0.92289 0.92708 1.34765 0.91496 1.25782 1.00419 0.99941 0.98667 1.70243 1.17077 1.30792 1.40301 0.85189 0.79106 0.78968 0.77105 1.19159 1.21454 1.22145 1.22037 0.78680 1.00503 0.99856 0.93026 0.91966 0.92741 0.90315 0.93061 0.92011 0.92153 0.92266 0.92519 0.87023 0.86841 0.74783 0.86799 0.87086 0.86757 0.89284 0.91843 0.87339 0.91725 0.92545 0.98274 0.96452 0.94572 0.94254 0.92064 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.19 71.98 0.66 -0.90 16 2 C -0.10 -1.03 2.92 -10.79 -0.03 -1.06 16 3 C -0.15 -1.54 8.95 71.98 0.64 -0.89 16 4 C -0.09 -1.34 3.97 30.59 0.12 -1.22 16 5 C -0.14 -1.83 5.45 29.85 0.16 -1.67 16 6 C 0.51 10.43 7.83 87.66 0.69 11.11 16 7 O -0.58 -15.37 15.98 -3.02 -0.05 -15.42 16 8 N -0.72 -14.75 5.53 -466.79 -2.58 -17.33 16 9 C 0.11 2.25 4.50 85.63 0.39 2.64 16 10 C 0.50 14.31 7.77 87.66 0.68 15.00 16 11 O -0.58 -21.56 15.08 -3.03 -0.05 -21.61 16 12 N -0.60 -16.72 2.97 -818.83 -2.44 -19.15 16 13 C 0.10 1.81 6.34 86.36 0.55 2.36 16 14 C -0.12 -2.43 6.09 30.68 0.19 -2.25 16 15 C -0.12 -3.67 5.12 30.63 0.16 -3.51 16 16 C 0.17 6.59 2.74 45.08 0.12 6.72 16 17 H 0.05 1.94 7.86 -2.38 -0.02 1.92 16 18 N -0.61 -30.24 2.82 -702.30 -1.98 -32.22 16 19 C 0.18 8.76 7.91 127.77 1.01 9.77 16 20 C -0.26 -14.63 9.60 84.03 0.81 -13.83 16 21 H 0.07 3.66 7.81 -2.91 -0.02 3.64 16 22 C -0.05 -3.01 5.11 84.86 0.43 -2.58 16 23 N -0.94 -56.16 10.63 21.65 0.23 -55.93 16 24 Si 0.97 45.84 29.57 68.60 2.03 47.87 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C 0.11 4.29 5.79 86.37 0.50 4.79 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.06 0.57 6.56 -2.39 -0.02 0.55 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 38 H 0.11 1.19 6.56 -2.39 -0.02 1.18 16 39 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.41 8.50 7.44 -92.71 -0.69 7.81 16 41 H 0.11 1.98 7.94 -2.39 -0.02 1.96 16 42 H 0.11 2.02 7.69 -2.39 -0.02 2.00 16 43 H 0.11 1.40 5.93 -2.39 -0.01 1.38 16 44 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.86 6.71 -2.39 -0.02 1.84 16 48 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.00 -0.06 7.41 -2.39 -0.02 -0.07 16 50 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 51 H 0.04 1.45 6.45 -2.39 -0.02 1.44 16 52 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 53 H 0.06 2.31 7.52 -2.39 -0.02 2.29 16 54 H 0.05 2.26 7.00 -2.39 -0.02 2.25 16 Total: -1.00 -74.06 417.38 2.43 -71.63 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.18 Total: 17.70 kcal Atomic # 6 Polarization: 17.39 SS G_CDS: 7.08 Total: 24.47 kcal Atomic # 7 Polarization: -117.87 SS G_CDS: -6.76 Total: -124.63 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.09 Total: -37.03 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -74.06 2.43 -71.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752998693.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.729 kcal (2) G-P(sol) polarization free energy of solvation -74.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds