Wall clock time and date at job start Sat Apr 11 2020 05:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47098 * 2 1 4 4 C 1.53006 * 109.47370 * 119.99786 * 2 1 3 5 5 C 1.52999 * 109.46997 * 175.00241 * 4 2 1 6 6 C 1.50706 * 109.46573 * 180.02562 * 5 4 2 7 7 O 1.21274 * 120.00042 * 359.72068 * 6 5 4 8 8 N 1.34777 * 119.99766 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00266 * 179.97438 * 8 6 5 10 10 C 1.50699 * 109.47317 * 180.02562 * 9 8 6 11 11 O 1.21282 * 120.00041 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99614 * 180.02562 * 10 9 8 13 13 C 1.46510 * 119.99611 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.46858 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.46969 * 180.02562 * 14 13 12 16 16 H 1.08994 * 110.88622 * 54.29659 * 15 14 13 17 17 C 1.55160 * 111.00528 * 178.17945 * 15 14 13 18 18 C 1.54323 * 102.94232 * 153.57247 * 17 15 14 19 19 N 1.47023 * 107.27071 * 337.80856 * 18 17 15 20 20 C 1.36944 * 125.64693 * 178.97111 * 19 18 17 21 21 H 1.07998 * 119.99934 * 179.97438 * 20 19 18 22 22 C 1.38811 * 120.00077 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99886 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00305 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47201 * 89.99761 * 24 22 20 26 26 H 1.48498 * 109.47592 * 210.00025 * 24 22 20 27 27 H 1.48505 * 109.46978 * 330.00109 * 24 22 20 28 28 C 1.47468 * 108.72366 * 358.97329 * 19 18 17 29 29 H 1.09000 * 109.46998 * 300.00170 * 1 2 3 30 30 H 1.09002 * 109.47083 * 60.00155 * 1 2 3 31 31 H 1.08994 * 109.46630 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47608 * 240.00265 * 2 1 3 33 33 H 1.08996 * 109.46933 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47028 * 299.99879 * 3 2 1 35 35 H 1.09000 * 109.47335 * 60.00037 * 3 2 1 36 36 H 1.09000 * 109.46866 * 55.00029 * 4 2 1 37 37 H 1.09001 * 109.46611 * 295.00146 * 4 2 1 38 38 H 1.09000 * 109.47486 * 60.00167 * 5 4 2 39 39 H 1.09001 * 109.47362 * 299.99445 * 5 4 2 40 40 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 41 41 H 1.09004 * 109.47212 * 300.00463 * 9 8 6 42 42 H 1.09000 * 109.46684 * 60.00307 * 9 8 6 43 43 H 0.96996 * 120.00269 * 359.97438 * 12 10 9 44 44 H 1.08992 * 109.46835 * 299.99888 * 13 12 10 45 45 H 1.08996 * 109.46804 * 60.00064 * 13 12 10 46 46 H 1.09004 * 109.47298 * 299.99935 * 14 13 12 47 47 H 1.09004 * 109.47552 * 60.00064 * 14 13 12 48 48 H 1.08990 * 110.71979 * 271.93963 * 17 15 14 49 49 H 1.09006 * 110.71914 * 35.03840 * 17 15 14 50 50 H 1.09005 * 109.88014 * 97.22774 * 18 17 15 51 51 H 1.08998 * 109.88511 * 218.23340 * 18 17 15 52 52 H 0.96999 * 120.00182 * 180.02562 * 23 22 20 53 53 H 1.09000 * 110.34671 * 265.25239 * 28 19 18 54 54 H 1.09004 * 110.40413 * 142.91360 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5649 -0.8309 1.1880 6 6 4.0672 -1.5419 2.4182 7 8 3.2832 -1.9187 3.2633 8 7 5.3880 -1.7543 2.5816 9 6 5.8764 -2.4449 3.7778 10 6 7.3783 -2.5531 3.7173 11 8 7.9814 -2.0977 2.7688 12 7 8.0512 -3.1559 4.7175 13 6 9.5113 -3.2616 4.6585 14 6 10.0212 -3.9827 5.9078 15 6 11.5461 -4.0925 5.8465 16 1 12.0006 -3.1129 5.6988 17 6 12.1059 -4.7791 7.1203 18 6 13.4269 -5.4038 6.6241 19 7 13.3168 -5.5567 5.1660 20 6 14.2880 -6.0571 4.3404 21 1 14.1089 -6.1294 3.2778 22 6 15.5027 -6.4714 4.8692 23 7 15.7212 -6.3828 6.1642 24 14 16.8273 -7.1547 3.7432 25 1 17.6945 -6.0462 3.2695 26 1 17.6490 -8.1424 4.4878 27 1 16.1914 -7.8187 2.5770 28 6 11.9874 -5.0820 4.7393 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6055 -1.7198 1.2952 37 1 1.7517 -0.1582 2.1370 38 1 3.9995 0.1676 1.1420 39 1 3.8533 -1.3939 0.3003 40 1 6.0154 -1.4493 1.9076 41 1 5.5884 -1.8818 4.6655 42 1 5.4414 -3.4433 3.8239 43 1 7.5689 -3.5198 5.4763 44 1 9.7992 -3.8244 3.7707 45 1 9.9462 -2.2632 4.6127 46 1 9.7333 -3.4194 6.7955 47 1 9.5863 -4.9811 5.9541 48 1 12.2966 -4.0442 7.9023 49 1 11.4215 -5.5495 7.4756 50 1 14.2618 -4.7460 6.8659 51 1 13.5750 -6.3774 7.0911 52 1 16.5701 -6.6720 6.5337 53 1 11.2892 -5.9167 4.6761 54 1 12.0566 -4.5706 3.7792 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753336968.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:14 Heat of formation + Delta-G solvation = -106.718661 kcal Electronic energy + Delta-G solvation = -28353.004329 eV Core-core repulsion = 24323.133064 eV Total energy + Delta-G solvation = -4029.871265 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.29222 -40.35608 -39.38331 -37.48816 -36.57246 -35.46105 -34.76877 -32.65362 -32.05979 -30.80809 -29.28906 -27.97315 -27.78943 -26.43108 -25.01987 -23.54770 -21.93679 -21.75640 -21.47241 -20.84544 -20.71589 -18.86567 -18.75522 -17.57775 -17.29832 -17.12311 -16.86786 -16.63031 -16.32287 -16.21921 -15.72050 -15.55971 -15.19729 -15.13284 -14.59906 -14.39492 -14.25958 -14.05642 -13.87271 -13.73643 -13.61136 -13.33365 -13.30620 -13.04593 -13.03696 -12.81665 -12.64358 -12.61641 -12.24191 -12.20458 -12.01266 -11.79799 -11.67973 -11.58851 -11.49431 -11.42229 -11.38524 -11.31845 -11.07337 -10.93459 -10.70731 -10.27933 -10.09122 -8.88520 -7.85602 -5.20690 1.44174 1.46157 1.46506 1.54842 1.62071 1.78120 2.44986 2.49186 3.32418 3.57260 3.68386 3.76953 3.82272 3.90422 3.99377 4.00836 4.16502 4.20902 4.29254 4.34524 4.36329 4.39379 4.42263 4.57691 4.62724 4.70038 4.70953 4.77323 4.83425 4.88287 4.91396 4.98196 5.01250 5.08775 5.13301 5.16981 5.17377 5.20434 5.26644 5.27582 5.36711 5.38896 5.44933 5.51371 5.54281 5.56379 5.71250 5.79918 6.21053 6.44173 6.47012 7.11138 7.11898 7.17953 7.79486 8.43458 9.24758 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025564 B = 0.001371 C = 0.001322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.017601 B =20424.438813 C =21171.441210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.152 4.152 4 C -0.095 4.095 5 C -0.137 4.137 6 C 0.513 3.487 7 O -0.580 6.580 8 N -0.719 5.719 9 C 0.103 3.897 10 C 0.508 3.492 11 O -0.577 6.577 12 N -0.709 5.709 13 C 0.123 3.877 14 C -0.100 4.100 15 C -0.086 4.086 16 H 0.072 0.928 17 C -0.122 4.122 18 C 0.180 3.820 19 N -0.631 5.631 20 C -0.245 4.245 21 H 0.079 0.921 22 C -0.067 4.067 23 N -0.952 5.952 24 Si 0.977 3.023 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.270 1.270 28 C 0.133 3.867 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.416 0.584 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.420 0.580 44 H 0.053 0.947 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.081 0.919 48 H 0.081 0.919 49 H 0.076 0.924 50 H 0.006 0.994 51 H 0.003 0.997 52 H 0.246 0.754 53 H 0.025 0.975 54 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.924 13.969 -6.827 33.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.209 4.209 4 C -0.133 4.133 5 C -0.176 4.176 6 C 0.302 3.698 7 O -0.460 6.460 8 N -0.374 5.374 9 C -0.024 4.024 10 C 0.294 3.706 11 O -0.457 6.457 12 N -0.361 5.361 13 C 0.000 4.000 14 C -0.138 4.138 15 C -0.106 4.106 16 H 0.091 0.909 17 C -0.161 4.161 18 C 0.055 3.945 19 N -0.358 5.358 20 C -0.374 4.374 21 H 0.097 0.903 22 C -0.260 4.260 23 N -0.601 5.601 24 Si 0.805 3.195 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.194 1.194 28 C 0.008 3.992 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.254 0.746 41 H 0.130 0.870 42 H 0.127 0.873 43 H 0.258 0.742 44 H 0.072 0.928 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.024 0.976 51 H 0.021 0.979 52 H 0.056 0.944 53 H 0.043 0.957 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -29.830 13.923 -6.876 33.630 hybrid contribution 1.519 -0.719 -0.264 1.701 sum -28.311 13.204 -7.140 32.045 Atomic orbital electron populations 1.21843 0.95126 1.01757 1.01920 1.21132 0.95935 0.96619 0.97674 1.21932 1.01562 0.95529 1.01885 1.21357 0.92997 1.00767 0.98223 1.21800 0.97807 1.02667 0.95347 1.21303 0.81153 0.78590 0.88786 1.90694 1.56166 1.53157 1.46004 1.45843 1.08176 1.59669 1.23746 1.21098 0.89439 1.00960 0.90935 1.20808 0.90267 0.77292 0.82184 1.90711 1.70756 1.49526 1.34694 1.45797 1.07880 1.58681 1.23744 1.21314 0.79108 1.00644 0.98978 1.21597 0.92924 1.01834 0.97470 1.22159 0.95490 0.98037 0.94873 0.90928 1.22758 0.96356 0.99786 0.97159 1.20938 0.93975 0.96323 0.83244 1.44853 1.12902 1.74094 1.03925 1.19481 0.93562 1.33802 0.90554 0.90284 1.25646 1.00174 1.02590 0.97567 1.70200 1.24148 1.54198 1.11553 0.85096 0.78915 0.77603 0.77850 1.21259 1.21897 1.19445 1.21848 0.86053 0.94788 0.96468 0.93042 0.91992 0.92861 0.90340 0.91778 0.92240 0.93058 0.92502 0.92540 0.86766 0.86864 0.74601 0.86998 0.87253 0.74206 0.92847 0.91978 0.88436 0.90056 0.90025 0.90544 0.97555 0.97913 0.94448 0.95740 0.94828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.19 71.98 0.66 -0.68 16 2 C -0.10 -0.83 2.92 -10.79 -0.03 -0.86 16 3 C -0.15 -1.16 8.95 71.98 0.64 -0.51 16 4 C -0.10 -1.14 3.97 30.60 0.12 -1.02 16 5 C -0.14 -1.39 5.46 29.85 0.16 -1.22 16 6 C 0.51 8.52 7.83 87.66 0.69 9.21 16 7 O -0.58 -13.83 15.98 -3.01 -0.05 -13.88 16 8 N -0.72 -10.87 5.53 -466.79 -2.58 -13.45 16 9 C 0.10 1.43 6.15 85.63 0.53 1.96 16 10 C 0.51 9.34 7.90 87.66 0.69 10.03 16 11 O -0.58 -15.26 15.67 -3.04 -0.05 -15.31 16 12 N -0.71 -10.75 5.56 -463.06 -2.57 -13.33 16 13 C 0.12 2.54 5.55 86.38 0.48 3.02 16 14 C -0.10 -1.94 4.84 30.59 0.15 -1.79 16 15 C -0.09 -2.58 3.04 -9.40 -0.03 -2.61 16 16 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 17 C -0.12 -4.13 6.42 31.78 0.20 -3.92 16 18 C 0.18 8.94 5.37 86.73 0.47 9.40 16 19 N -0.63 -32.98 3.40 -691.86 -2.35 -35.33 16 20 C -0.24 -14.10 10.28 84.03 0.86 -13.24 16 21 H 0.08 4.37 7.83 -2.91 -0.02 4.35 16 22 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 23 N -0.95 -58.37 10.31 21.65 0.22 -58.15 16 24 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 25 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 28 C 0.13 5.30 6.04 86.85 0.52 5.83 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.40 6.57 -2.39 -0.02 0.38 16 34 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 37 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 38 H 0.11 0.79 6.57 -2.39 -0.02 0.77 16 39 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.42 6.00 7.44 -92.71 -0.69 5.31 16 41 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 42 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.42 3.52 8.47 -92.71 -0.79 2.73 16 44 H 0.05 1.35 7.60 -2.39 -0.02 1.33 16 45 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.10 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.08 1.47 8.04 -2.39 -0.02 1.46 16 48 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 49 H 0.08 2.30 8.04 -2.38 -0.02 2.28 16 50 H 0.01 0.35 7.38 -2.38 -0.02 0.33 16 51 H 0.00 0.15 7.50 -2.39 -0.02 0.13 16 52 H 0.25 14.66 8.31 -92.71 -0.77 13.88 16 53 H 0.02 0.95 7.96 -2.39 -0.02 0.93 16 54 H 0.03 1.34 8.10 -2.38 -0.02 1.32 16 Total: -1.00 -78.34 428.55 0.64 -77.70 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -0.60 Total: 12.96 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: 6.59 Total: 10.13 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -7.28 Total: -120.25 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.10 Total: -29.19 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -78.34 0.64 -77.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753336968.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.022 kcal (2) G-P(sol) polarization free energy of solvation -78.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds