Wall clock time and date at job start Sat Apr 11 2020 05:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47488 * 2 1 4 4 C 1.53000 * 109.47047 * 60.00383 * 3 2 1 5 5 C 1.53001 * 109.47279 * 300.00330 * 3 2 1 6 6 C 1.50701 * 109.47264 * 179.97438 * 3 2 1 7 7 O 1.21283 * 119.99571 * 354.60524 * 6 3 2 8 8 N 1.34777 * 119.99907 * 174.60111 * 6 3 2 9 9 C 1.47017 * 125.64988 * 354.36615 * 8 6 3 10 10 C 1.54324 * 107.27186 * 181.08964 * 9 8 6 11 11 C 1.55161 * 102.93995 * 22.19918 * 10 9 8 12 12 H 1.09000 * 111.03914 * 82.58339 * 11 10 9 13 13 C 1.52997 * 111.00360 * 206.42208 * 11 10 9 14 14 N 1.46899 * 109.47041 * 287.19333 * 13 11 10 15 15 C 1.46899 * 111.00294 * 293.95652 * 14 13 11 16 16 C 1.46901 * 111.00171 * 169.99710 * 14 13 11 17 17 C 1.50699 * 109.47272 * 189.99650 * 16 14 13 18 18 O 1.21289 * 119.99965 * 0.02562 * 17 16 14 19 19 N 1.34777 * 119.99990 * 179.97438 * 17 16 14 20 20 C 1.37107 * 119.99755 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00413 * 0.02562 * 20 19 17 22 22 C 1.38947 * 119.99810 * 180.02562 * 20 19 17 23 23 N 1.31420 * 119.99912 * 359.72435 * 22 20 19 24 24 Si 1.86802 * 120.00015 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47105 * 179.72364 * 24 22 20 26 26 H 1.48493 * 109.47046 * 299.72516 * 24 22 20 27 27 H 1.48497 * 109.47016 * 59.72683 * 24 22 20 28 28 C 1.47423 * 125.64574 * 174.40504 * 8 6 3 29 29 H 1.09005 * 109.46651 * 299.99913 * 1 2 3 30 30 H 1.09005 * 109.47299 * 59.99323 * 1 2 3 31 31 H 1.08994 * 109.47789 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47102 * 239.99969 * 2 1 3 33 33 H 1.09005 * 109.47299 * 120.00677 * 2 1 3 34 34 H 1.09002 * 109.47084 * 181.07962 * 4 3 2 35 35 H 1.09008 * 109.47058 * 301.07965 * 4 3 2 36 36 H 1.09005 * 109.47370 * 61.07328 * 4 3 2 37 37 H 1.09006 * 109.46888 * 284.62917 * 5 3 2 38 38 H 1.08995 * 109.47091 * 44.62429 * 5 3 2 39 39 H 1.08992 * 109.47195 * 164.62792 * 5 3 2 40 40 H 1.09000 * 109.88395 * 300.51425 * 9 8 6 41 41 H 1.09008 * 109.88290 * 61.52298 * 9 8 6 42 42 H 1.08995 * 110.72299 * 263.83263 * 10 9 8 43 43 H 1.09005 * 110.71780 * 140.55546 * 10 9 8 44 44 H 1.08998 * 109.47645 * 167.19522 * 13 11 10 45 45 H 1.09005 * 109.47290 * 47.18972 * 13 11 10 46 46 H 1.09008 * 109.46636 * 296.04302 * 15 14 13 47 47 H 1.08998 * 109.46978 * 56.03848 * 15 14 13 48 48 H 1.08992 * 109.47502 * 176.04820 * 15 14 13 49 49 H 1.09010 * 109.46733 * 70.00199 * 16 14 13 50 50 H 1.08995 * 109.47399 * 310.00588 * 16 14 13 51 51 H 0.96993 * 120.00300 * 0.02562 * 19 17 16 52 52 H 0.96995 * 119.99764 * 0.28071 * 23 22 20 53 53 H 1.09003 * 110.36815 * 37.00468 * 28 8 6 54 54 H 1.09001 * 110.46394 * 274.72505 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5302 2.1637 1.2493 5 6 1.5301 2.1638 -1.2492 6 6 3.5471 1.4424 0.0006 7 8 4.1533 0.3966 0.0998 8 7 4.2210 2.6044 -0.1091 9 6 3.6200 3.9239 -0.3520 10 6 4.7738 4.9459 -0.4283 11 6 5.9974 4.0623 -0.7882 12 1 6.0409 3.8722 -1.8606 13 6 7.2979 4.6989 -0.2939 14 7 7.6258 5.8583 -1.1343 15 6 7.9406 5.4412 -2.5072 16 6 8.7298 6.6341 -0.5535 17 6 8.8760 7.9355 -1.2991 18 8 8.1333 8.1918 -2.2231 19 7 9.8314 8.8151 -0.9385 20 6 9.9641 9.9993 -1.6166 21 1 9.3028 10.2276 -2.4393 22 6 10.9494 10.9059 -1.2452 23 7 11.7506 10.6306 -0.2405 24 14 11.1297 12.5197 -2.1685 25 1 12.2415 13.3068 -1.5772 26 1 11.4247 12.2423 -3.5971 27 1 9.8662 13.2930 -2.0650 28 6 5.6831 2.7626 -0.0061 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5140 0.8900 34 1 1.8777 3.1968 1.2397 35 1 0.4403 2.1470 1.2591 36 1 1.9092 1.6610 2.1392 37 1 2.0985 1.8317 -2.1180 38 1 0.4748 1.9340 -1.3960 39 1 1.6537 3.2394 -1.1236 40 1 3.0710 3.9135 -1.2936 41 1 2.9473 4.1812 0.4663 42 1 4.9207 5.4343 0.5349 43 1 4.5861 5.6817 -1.2104 44 1 8.1049 3.9685 -0.3516 45 1 7.1741 5.0227 0.7395 46 1 8.8380 4.8223 -2.5021 47 1 7.1067 4.8687 -2.9132 48 1 8.1110 6.3229 -3.1248 49 1 9.6556 6.0639 -0.6327 50 1 8.5177 6.8383 0.4959 51 1 10.4252 8.6103 -0.1993 52 1 11.6568 9.7927 0.2391 53 1 6.1898 1.9128 -0.4635 54 1 5.9828 2.8655 1.0368 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753354325.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:26 Heat of formation + Delta-G solvation = -88.254431 kcal Electronic energy + Delta-G solvation = -30252.135321 eV Core-core repulsion = 26223.064725 eV Total energy + Delta-G solvation = -4029.070596 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.69695 -40.52615 -39.27127 -37.52109 -37.36199 -36.18215 -33.35079 -33.06418 -31.12048 -30.43461 -29.29095 -28.37287 -27.71690 -26.49268 -25.95789 -24.39133 -23.40572 -21.62516 -21.26232 -21.09266 -19.91783 -19.71641 -18.18946 -17.71994 -17.40839 -16.95035 -16.62496 -16.58679 -16.22179 -15.95184 -15.56853 -15.35686 -15.33207 -15.09121 -15.01604 -14.57326 -14.11698 -14.01739 -13.86973 -13.80829 -13.41576 -13.40566 -13.31512 -13.11485 -13.01604 -12.85125 -12.72636 -12.54024 -12.43508 -12.28772 -12.17879 -12.01474 -11.91184 -11.86061 -11.79091 -11.55096 -11.46493 -11.43138 -11.38392 -10.71161 -10.31109 -10.06785 -9.67016 -9.23421 -8.89727 -6.03454 1.54476 1.55109 1.55788 1.83505 1.91845 2.04400 2.40659 2.68622 3.19047 3.24727 3.37201 3.62577 3.63344 3.77603 3.83999 3.87324 4.09957 4.18957 4.21839 4.27303 4.32208 4.36015 4.40711 4.43856 4.44552 4.51835 4.55267 4.59912 4.64254 4.69641 4.73023 4.77997 4.83010 4.86801 4.88084 5.00790 5.06759 5.09192 5.14151 5.15897 5.19195 5.22952 5.28274 5.37441 5.41618 5.55289 5.62156 5.92591 6.00117 6.14740 6.47827 6.61289 6.79010 7.07823 7.48192 7.97598 8.58041 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032179 B = 0.001767 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.927472 B =15839.032383 C =16116.679555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.099 4.099 3 C -0.074 4.074 4 C -0.144 4.144 5 C -0.155 4.155 6 C 0.529 3.471 7 O -0.590 6.590 8 N -0.614 5.614 9 C 0.088 3.912 10 C -0.113 4.113 11 C -0.088 4.088 12 H 0.081 0.919 13 C 0.068 3.932 14 N -0.528 5.528 15 C 0.025 3.975 16 C 0.057 3.943 17 C 0.447 3.553 18 O -0.607 6.607 19 N -0.590 5.590 20 C -0.407 4.407 21 H 0.074 0.926 22 C -0.043 4.043 23 N -0.919 5.919 24 Si 1.133 2.867 25 H -0.274 1.274 26 H -0.274 1.274 27 H -0.273 1.273 28 C 0.111 3.889 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.043 0.957 45 H 0.090 0.910 46 H 0.024 0.976 47 H 0.081 0.919 48 H 0.055 0.945 49 H 0.065 0.935 50 H 0.112 0.888 51 H 0.383 0.617 52 H 0.259 0.741 53 H 0.062 0.938 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.952 -17.970 3.756 27.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.077 4.077 4 C -0.201 4.201 5 C -0.212 4.212 6 C 0.320 3.680 7 O -0.471 6.471 8 N -0.347 5.347 9 C -0.033 4.033 10 C -0.151 4.151 11 C -0.107 4.107 12 H 0.099 0.901 13 C -0.060 4.060 14 N -0.252 5.252 15 C -0.123 4.123 16 C -0.074 4.074 17 C 0.234 3.766 18 O -0.492 6.492 19 N -0.230 5.230 20 C -0.536 4.536 21 H 0.092 0.908 22 C -0.241 4.241 23 N -0.558 5.558 24 Si 0.953 3.047 25 H -0.199 1.199 26 H -0.199 1.199 27 H -0.198 1.198 28 C -0.012 4.012 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.061 0.939 45 H 0.109 0.891 46 H 0.042 0.958 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.130 0.870 51 H 0.217 0.783 52 H 0.070 0.930 53 H 0.081 0.919 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.714 -16.697 3.106 26.786 hybrid contribution 0.754 -2.230 0.407 2.389 sum -19.959 -18.926 3.513 27.730 Atomic orbital electron populations 1.21920 0.93201 1.02484 1.03138 1.21320 0.97289 0.93491 1.01609 1.20788 0.88500 0.98770 0.99640 1.22022 1.03266 1.00381 0.94396 1.22263 1.02973 1.01476 0.94482 1.21014 0.90997 0.81489 0.74518 1.90663 1.71550 1.32463 1.52414 1.48521 1.07751 1.07748 1.70651 1.22727 0.96855 0.80760 1.02963 1.22588 0.92535 0.96671 1.03326 1.22237 0.94870 0.93532 1.00059 0.90094 1.22097 0.95945 0.90499 0.97431 1.61486 1.38826 1.22180 1.02674 1.22456 0.99579 1.00040 0.90211 1.21757 0.94444 0.91808 0.99391 1.20764 0.82128 0.87042 0.86622 1.90466 1.46497 1.78954 1.33235 1.42011 1.31362 1.17486 1.32097 1.20500 1.19557 0.96897 1.16683 0.90836 1.27779 0.91830 1.06602 0.97936 1.70974 1.38574 1.25806 1.20488 0.82634 0.77126 0.70444 0.74507 1.19896 1.19912 1.19802 1.22172 0.80993 0.97403 1.00613 0.91172 0.91123 0.92262 0.93220 0.93001 0.90789 0.88844 0.93234 0.93528 0.89074 0.89617 0.89307 0.88931 0.90023 0.89960 0.93860 0.89119 0.95784 0.90071 0.92668 0.91736 0.86958 0.78273 0.93032 0.91933 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.25 71.98 0.67 -0.76 16 2 C -0.10 -1.56 4.29 30.59 0.13 -1.43 16 3 C -0.07 -1.09 0.52 -52.93 -0.03 -1.12 16 4 C -0.14 -1.54 7.97 71.98 0.57 -0.96 16 5 C -0.16 -1.68 7.55 71.98 0.54 -1.13 16 6 C 0.53 11.81 6.52 87.66 0.57 12.38 16 7 O -0.59 -18.34 16.21 -3.04 -0.05 -18.39 16 8 N -0.61 -11.60 3.32 -811.78 -2.70 -14.30 16 9 C 0.09 1.20 5.06 86.73 0.44 1.63 16 10 C -0.11 -1.88 6.37 31.78 0.20 -1.68 16 11 C -0.09 -1.64 2.99 -9.40 -0.03 -1.66 16 12 H 0.08 1.66 6.23 -2.39 -0.01 1.64 16 13 C 0.07 1.42 4.41 86.30 0.38 1.80 16 14 N -0.53 -15.43 4.45 -927.05 -4.12 -19.55 16 15 C 0.03 0.76 9.03 127.69 1.15 1.91 16 16 C 0.06 1.86 5.45 85.56 0.47 2.32 16 17 C 0.45 20.57 7.51 87.66 0.66 21.23 16 18 O -0.61 -32.51 13.89 -3.06 -0.04 -32.56 16 19 N -0.59 -29.47 5.28 -306.99 -1.62 -31.10 16 20 C -0.41 -22.99 9.68 84.04 0.81 -22.18 16 21 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 22 C -0.04 -2.34 5.50 84.92 0.47 -1.88 16 23 N -0.92 -51.00 13.69 21.66 0.30 -50.71 16 24 Si 1.13 48.17 29.92 68.60 2.05 50.23 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 C 0.11 2.16 6.40 86.86 0.56 2.71 16 29 H 0.07 0.52 6.41 -2.38 -0.02 0.50 16 30 H 0.07 0.52 6.13 -2.38 -0.01 0.51 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.98 8.04 -2.38 -0.02 0.97 16 34 H 0.07 0.67 5.24 -2.39 -0.01 0.66 16 35 H 0.09 0.63 6.37 -2.38 -0.02 0.61 16 36 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.05 0.64 8.04 -2.38 -0.02 0.62 16 38 H 0.09 0.67 5.76 -2.39 -0.01 0.66 16 39 H 0.09 0.71 4.98 -2.39 -0.01 0.70 16 40 H 0.09 1.04 5.69 -2.39 -0.01 1.03 16 41 H 0.09 0.93 5.63 -2.38 -0.01 0.92 16 42 H 0.08 1.32 7.91 -2.39 -0.02 1.31 16 43 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 44 H 0.04 0.85 8.12 -2.39 -0.02 0.83 16 45 H 0.09 1.67 7.76 -2.38 -0.02 1.65 16 46 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.08 2.09 6.18 -2.39 -0.01 2.08 16 48 H 0.05 2.15 5.88 -2.39 -0.01 2.14 16 49 H 0.06 1.90 8.12 -2.38 -0.02 1.88 16 50 H 0.11 3.11 7.93 -2.39 -0.02 3.09 16 51 H 0.38 17.61 6.73 -92.71 -0.62 16.99 16 52 H 0.26 13.87 6.77 -92.71 -0.63 13.24 16 53 H 0.06 1.40 7.99 -2.39 -0.02 1.38 16 54 H 0.08 1.37 8.03 -2.39 -0.02 1.35 16 Total: -1.00 -74.89 404.40 1.81 -73.09 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.43 Total: 32.10 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 7.57 Total: 11.18 kcal Atomic # 7 Polarization: -107.51 SS G_CDS: -8.14 Total: -115.65 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.09 Total: -50.95 kcal Atomic # 14 Polarization: 48.17 SS G_CDS: 2.05 Total: 50.23 kcal Total: -74.89 1.81 -73.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753354325.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.168 kcal (2) G-P(sol) polarization free energy of solvation -74.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds