Wall clock time and date at job start Sat Apr 11 2020 05:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47471 * 2 1 4 4 C 1.53003 * 109.47235 * 294.76021 * 3 2 1 5 5 C 1.52998 * 109.46514 * 295.00052 * 4 3 2 6 6 C 1.53001 * 109.46663 * 54.75869 * 3 2 1 7 7 H 1.09007 * 109.47041 * 299.99857 * 6 3 2 8 8 C 1.53002 * 109.46788 * 180.02562 * 6 3 2 9 9 C 1.50694 * 109.47580 * 60.00140 * 6 3 2 10 10 O 1.21283 * 119.99621 * 359.97438 * 9 6 3 11 11 N 1.34770 * 120.00292 * 179.97438 * 9 6 3 12 12 C 1.46507 * 120.00270 * 179.97438 * 11 9 6 13 13 C 1.52995 * 109.47331 * 179.97438 * 12 11 9 14 14 C 1.53937 * 113.73355 * 271.72746 * 13 12 11 15 15 N 1.47956 * 86.18040 * 221.91944 * 14 13 12 16 16 C 1.46901 * 110.99918 * 137.58384 * 15 14 13 17 17 C 1.50697 * 109.47177 * 70.64367 * 16 15 14 18 18 O 1.21292 * 119.99832 * 359.97438 * 17 16 15 19 19 N 1.34772 * 119.99909 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00112 * 179.97438 * 19 17 16 21 21 H 1.07992 * 119.99705 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00064 * 179.97438 * 20 19 17 23 23 N 1.31413 * 120.00430 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99750 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.47243 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46772 * 120.00145 * 24 22 20 27 27 H 1.48499 * 109.47273 * 239.99796 * 24 22 20 28 28 C 1.47956 * 90.76297 * 24.68852 * 15 14 13 29 29 H 1.08999 * 109.47167 * 293.28800 * 1 2 3 30 30 H 1.09003 * 109.47005 * 53.28591 * 1 2 3 31 31 H 1.09003 * 109.47301 * 173.28648 * 1 2 3 32 32 H 1.09002 * 109.47106 * 239.99738 * 2 1 3 33 33 H 1.09003 * 109.47129 * 119.99962 * 2 1 3 34 34 H 1.08998 * 109.47459 * 174.75685 * 3 2 1 35 35 H 1.08996 * 109.46714 * 54.99670 * 4 3 2 36 36 H 1.08996 * 109.46901 * 175.00440 * 4 3 2 37 37 H 1.08992 * 109.47466 * 305.49913 * 5 4 3 38 38 H 1.09006 * 109.47301 * 65.50732 * 5 4 3 39 39 H 1.09008 * 109.47034 * 185.49791 * 5 4 3 40 40 H 1.08998 * 109.47091 * 299.99667 * 8 6 3 41 41 H 1.09000 * 109.47630 * 59.99967 * 8 6 3 42 42 H 1.09006 * 109.46933 * 180.02562 * 8 6 3 43 43 H 0.97003 * 120.00400 * 359.97438 * 11 9 6 44 44 H 1.08998 * 109.46787 * 300.00388 * 12 11 9 45 45 H 1.08998 * 109.46981 * 60.00039 * 12 11 9 46 46 H 1.09005 * 112.93985 * 43.43163 * 13 12 11 47 47 H 1.08995 * 113.76266 * 336.24148 * 14 13 12 48 48 H 1.09005 * 113.75504 * 107.60361 * 14 13 12 49 49 H 1.09006 * 109.46748 * 190.64237 * 16 15 14 50 50 H 1.08999 * 109.47376 * 310.63917 * 16 15 14 51 51 H 0.97001 * 120.00561 * 359.97438 * 19 17 16 52 52 H 0.96994 * 120.00481 * 180.02562 * 23 22 20 53 53 H 1.09002 * 113.76225 * 220.98899 * 28 15 14 54 54 H 1.09006 * 113.75956 * 89.62668 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6405 2.1248 -1.3099 5 6 2.3547 1.4428 -2.4785 6 6 1.4252 2.2007 1.1782 7 1 0.3392 2.1993 1.0842 8 6 1.9348 3.6434 1.1778 9 6 1.8187 1.5288 2.4684 10 8 2.5213 0.5404 2.4476 11 7 1.3899 2.0261 3.6453 12 6 1.7720 1.3726 4.8996 13 6 1.1584 2.1316 6.0777 14 6 2.0399 3.2796 6.6018 15 7 1.6624 2.8190 7.9562 16 6 2.8231 2.8243 8.8566 17 6 3.2128 4.2468 9.1654 18 8 2.5857 5.1659 8.6825 19 7 4.2589 4.4978 9.9774 20 6 4.6138 5.7920 10.2579 21 1 4.0555 6.6103 9.8280 22 6 5.6920 6.0508 11.0954 23 7 6.3717 5.0550 11.6182 24 14 6.1760 7.8142 11.4770 25 1 5.2590 8.7434 10.7694 26 1 6.0834 8.0471 12.9407 27 1 7.5700 8.0538 11.0250 28 6 1.3972 1.4577 7.4409 29 1 -0.3633 0.4063 0.9439 30 1 -0.3633 0.6144 -0.8238 31 1 -0.3634 -1.0206 -0.1201 32 1 1.8932 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1259 1.4439 0.0939 35 1 0.5621 2.0451 -1.4468 36 1 1.9255 3.1762 -1.2736 37 1 3.4289 1.4362 -2.2939 38 1 1.9963 0.4179 -2.5752 39 1 2.1476 1.9884 -3.3992 40 1 3.0208 3.6451 1.2715 41 1 1.6499 4.1292 0.2446 42 1 1.4972 4.1835 2.0175 43 1 0.8283 2.8169 3.6620 44 1 1.4079 0.3452 4.8995 45 1 2.8579 1.3732 4.9934 46 1 0.1206 2.4169 5.9052 47 1 3.0993 3.1581 6.3760 48 1 1.6621 4.2716 6.3541 49 1 2.5671 2.3086 9.7823 50 1 3.6582 2.3149 8.3759 51 1 4.7607 3.7628 10.3633 52 1 7.1241 5.2356 12.2032 53 1 0.5059 0.9939 7.8637 54 1 2.2686 0.8032 7.4605 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753405635.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:34 Heat of formation + Delta-G solvation = -85.816904 kcal Electronic energy + Delta-G solvation = -29745.193771 eV Core-core repulsion = 25716.228874 eV Total energy + Delta-G solvation = -4028.964897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.56378 -41.00852 -39.56654 -38.14922 -36.04046 -35.73231 -33.45410 -33.26298 -32.12744 -31.84548 -28.69235 -27.20376 -27.07471 -26.74677 -24.97261 -24.19072 -23.57545 -21.53564 -21.02480 -20.56838 -19.93392 -19.76401 -18.06558 -17.84048 -17.37982 -16.67498 -16.61660 -16.57418 -16.43395 -16.07842 -15.94227 -15.45731 -15.28563 -15.07174 -14.83056 -14.60100 -14.18460 -13.83486 -13.74678 -13.69968 -13.55942 -13.47136 -13.26322 -13.07802 -13.02358 -12.86740 -12.62372 -12.50172 -12.44163 -12.35396 -12.19460 -12.13208 -11.86224 -11.77265 -11.67234 -11.51783 -11.40396 -11.27529 -11.05926 -10.45220 -10.35090 -10.03866 -10.02784 -9.68842 -8.48925 -5.97900 1.34804 1.39994 1.54356 1.69506 2.02178 2.21456 2.27431 2.81486 3.17482 3.25984 3.44882 3.67311 3.70748 3.78122 3.91988 4.14051 4.18686 4.20272 4.29223 4.37080 4.38391 4.42982 4.45125 4.48920 4.50919 4.53384 4.61289 4.62574 4.67051 4.71935 4.82740 4.86346 4.88924 4.93167 4.98152 5.05762 5.12632 5.16535 5.22324 5.25663 5.34035 5.36739 5.38134 5.41234 5.45235 5.48119 5.58862 5.73334 5.88723 6.06549 6.57352 6.59275 7.10214 7.31340 7.53218 8.08601 8.68773 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.001849 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.170074 B =15139.534766 C =16052.715311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.131 4.131 3 C -0.063 4.063 4 C -0.120 4.120 5 C -0.153 4.153 6 C -0.103 4.103 7 H 0.119 0.881 8 C -0.148 4.148 9 C 0.512 3.488 10 O -0.576 6.576 11 N -0.720 5.720 12 C 0.135 3.865 13 C -0.104 4.104 14 C 0.019 3.981 15 N -0.481 5.481 16 C 0.022 3.978 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.333 4.333 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.014 3.986 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.045 0.955 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.069 0.931 43 H 0.413 0.587 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.121 0.879 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.108 0.892 50 H 0.073 0.927 51 H 0.395 0.605 52 H 0.278 0.722 53 H 0.111 0.889 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.063 -10.373 -23.771 28.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.082 4.082 4 C -0.157 4.157 5 C -0.211 4.211 6 C -0.124 4.124 7 H 0.137 0.863 8 C -0.205 4.205 9 C 0.300 3.700 10 O -0.455 6.455 11 N -0.372 5.372 12 C 0.011 3.989 13 C -0.123 4.123 14 C -0.110 4.110 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.114 4.114 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.088 0.912 43 H 0.249 0.751 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.139 0.861 47 H 0.074 0.926 48 H 0.090 0.910 49 H 0.126 0.874 50 H 0.091 0.909 51 H 0.229 0.771 52 H 0.087 0.913 53 H 0.129 0.871 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.303 -10.114 -23.557 28.435 hybrid contribution 1.500 0.351 0.614 1.659 sum -10.803 -9.763 -22.943 27.173 Atomic orbital electron populations 1.21843 0.95282 1.01751 1.01802 1.21731 0.96534 0.96513 1.02099 1.20936 0.99140 0.94689 0.93479 1.21694 1.01345 0.99809 0.92897 1.21804 1.00128 1.00903 0.98223 1.21460 1.03566 0.96414 0.90919 0.86273 1.21891 1.01061 0.93315 1.04221 1.21197 0.78941 0.83667 0.86219 1.90630 1.39185 1.27852 1.87875 1.46011 1.53469 1.32394 1.05367 1.21265 0.98843 0.96700 0.82086 1.23132 1.01044 0.94968 0.93137 1.23820 0.98120 0.99675 0.89340 1.68403 1.30686 1.13577 1.07710 1.22354 0.94608 0.93300 1.00674 1.20748 0.82153 0.91867 0.82487 1.90479 1.55663 1.47860 1.56331 1.41966 1.28071 1.08268 1.42943 1.19694 1.13556 0.84909 1.28050 0.90323 1.26066 0.95680 1.03734 0.95929 1.69677 1.20889 1.32929 1.32696 0.84858 0.78127 0.77009 0.78261 1.19747 1.19548 1.19581 1.24083 1.03272 0.91110 0.92984 0.93293 0.91107 0.93105 0.92072 0.92239 0.93018 0.90455 0.90856 0.93600 0.92685 0.91915 0.93609 0.89211 0.91216 0.75062 0.90622 0.93072 0.86067 0.92620 0.91036 0.87360 0.90921 0.77080 0.91292 0.87091 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.08 71.98 0.65 -1.30 16 2 C -0.13 -2.23 5.18 30.59 0.16 -2.08 16 3 C -0.06 -0.97 1.39 -10.79 -0.02 -0.99 16 4 C -0.12 -1.28 5.06 30.59 0.15 -1.13 16 5 C -0.15 -1.70 9.53 71.98 0.69 -1.01 16 6 C -0.10 -1.43 1.83 -11.54 -0.02 -1.45 16 7 H 0.12 1.19 6.50 -2.38 -0.02 1.17 16 8 C -0.15 -1.76 8.74 71.98 0.63 -1.13 16 9 C 0.51 10.39 6.87 87.66 0.60 10.99 16 10 O -0.58 -16.30 13.68 -3.04 -0.04 -16.34 16 11 N -0.72 -12.32 5.45 -463.07 -2.52 -14.84 16 12 C 0.14 2.59 5.53 86.38 0.48 3.07 16 13 C -0.10 -2.02 3.94 -10.15 -0.04 -2.06 16 14 C 0.02 0.57 6.31 86.41 0.55 1.11 16 15 N -0.48 -15.09 5.95 -912.43 -5.43 -20.52 16 16 C 0.02 0.78 5.31 85.56 0.45 1.23 16 17 C 0.44 21.28 7.59 87.66 0.67 21.95 16 18 O -0.62 -34.40 15.13 -3.07 -0.05 -34.45 16 19 N -0.58 -30.01 5.29 -307.00 -1.62 -31.64 16 20 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 21 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.20 13.05 21.66 0.28 -49.91 16 24 Si 0.99 43.27 29.55 68.60 2.03 45.29 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 C 0.01 0.30 7.54 86.40 0.65 0.95 16 29 H 0.05 0.64 6.75 -2.39 -0.02 0.63 16 30 H 0.07 0.70 6.20 -2.39 -0.01 0.68 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.99 6.45 -2.39 -0.02 0.97 16 33 H 0.06 1.40 5.65 -2.39 -0.01 1.38 16 34 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 35 H 0.08 0.66 6.23 -2.39 -0.01 0.65 16 36 H 0.07 0.68 6.17 -2.39 -0.01 0.67 16 37 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.05 0.62 6.72 -2.38 -0.02 0.60 16 39 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.09 0.75 6.32 -2.39 -0.02 0.74 16 42 H 0.07 0.73 7.56 -2.38 -0.02 0.71 16 43 H 0.41 5.14 7.89 -92.71 -0.73 4.41 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.19 7.83 -2.39 -0.02 1.17 16 46 H 0.12 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.06 1.73 7.53 -2.39 -0.02 1.71 16 48 H 0.07 2.38 8.09 -2.38 -0.02 2.36 16 49 H 0.11 3.40 8.14 -2.38 -0.02 3.38 16 50 H 0.07 2.26 7.69 -2.39 -0.02 2.25 16 51 H 0.40 19.64 7.90 -92.71 -0.73 18.91 16 52 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 53 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 54 H 0.08 1.57 7.75 -2.38 -0.02 1.55 16 Total: -1.00 -73.40 416.43 -1.02 -74.42 By element: Atomic # 1 Polarization: 38.99 SS G_CDS: -0.56 Total: 38.43 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 6.88 Total: 9.55 kcal Atomic # 7 Polarization: -107.62 SS G_CDS: -9.29 Total: -116.91 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -0.09 Total: -50.79 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.29 kcal Total: -73.40 -1.02 -74.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753405635.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.397 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds