Wall clock time and date at job start Sat Apr 11 2020 05:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.21282 * 119.99445 * 2 1 4 4 N 1.34777 * 120.00176 * 180.02562 * 2 1 3 5 5 C 1.46962 * 120.58882 * 4.89659 * 4 2 1 6 6 C 1.53821 * 108.39482 * 124.75991 * 5 4 2 7 7 N 1.46967 * 108.57812 * 49.63474 * 6 5 4 8 8 C 1.34773 * 120.59251 * 124.62405 * 7 6 5 9 9 O 1.21277 * 119.99989 * 180.02562 * 8 7 6 10 10 C 1.50704 * 120.00227 * 0.02562 * 8 7 6 11 11 N 1.46897 * 109.47138 * 186.41350 * 10 8 7 12 12 C 1.46903 * 110.99883 * 78.40702 * 11 10 8 13 13 C 1.50698 * 109.47261 * 189.99669 * 12 11 10 14 14 H 1.07999 * 119.99950 * 0.02562 * 13 12 11 15 15 C 1.37873 * 119.99790 * 179.97438 * 13 12 11 16 16 N 1.31507 * 120.00568 * 0.02562 * 15 13 12 17 17 Si 1.86807 * 119.99573 * 180.02562 * 15 13 12 18 18 H 1.48492 * 109.47256 * 60.00071 * 17 15 13 19 19 H 1.48506 * 109.46687 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.47086 * 299.99540 * 17 15 13 21 21 C 1.46899 * 110.99898 * 202.35968 * 11 10 8 22 22 C 1.52996 * 109.47279 * 73.21446 * 21 11 10 23 23 C 1.53006 * 109.47267 * 180.31802 * 22 21 11 24 24 C 1.52999 * 109.46716 * 65.00025 * 23 22 21 25 25 C 1.52996 * 109.47186 * 185.00253 * 23 22 21 26 26 C 1.46956 * 118.81277 * 304.64598 * 7 6 5 27 27 C 1.46954 * 120.59495 * 185.17636 * 4 2 1 28 28 H 1.09001 * 109.47017 * 185.48510 * 1 2 3 29 29 H 1.09000 * 109.47263 * 305.48298 * 1 2 3 30 30 H 1.09001 * 109.47299 * 65.48485 * 1 2 3 31 31 H 1.09002 * 109.61363 * 244.53657 * 5 4 2 32 32 H 1.08999 * 109.61779 * 5.05421 * 5 4 2 33 33 H 1.08994 * 109.74052 * 289.84669 * 6 5 4 34 34 H 1.09002 * 109.67471 * 169.38363 * 6 5 4 35 35 H 1.09003 * 109.47217 * 306.41748 * 10 8 7 36 36 H 1.09007 * 109.47120 * 66.41252 * 10 8 7 37 37 H 1.08995 * 109.47069 * 309.99811 * 12 11 10 38 38 H 1.09001 * 109.46920 * 69.99550 * 12 11 10 39 39 H 0.97001 * 120.00722 * 180.02562 * 16 15 13 40 40 H 1.09008 * 109.47235 * 193.21711 * 21 11 10 41 41 H 1.09006 * 109.47154 * 313.21196 * 21 11 10 42 42 H 1.08996 * 109.47259 * 300.31668 * 22 21 11 43 43 H 1.09006 * 109.46907 * 60.32136 * 22 21 11 44 44 H 1.08998 * 109.46939 * 304.99985 * 23 22 21 45 45 H 1.08998 * 109.47450 * 60.00273 * 24 23 22 46 46 H 1.09001 * 109.46831 * 179.97438 * 24 23 22 47 47 H 1.09003 * 109.47392 * 299.99918 * 24 23 22 48 48 H 1.08996 * 109.47597 * 59.99869 * 25 23 22 49 49 H 1.08997 * 109.46961 * 180.02562 * 25 23 22 50 50 H 1.09010 * 109.47044 * 300.00155 * 25 23 22 51 51 H 1.09006 * 109.60991 * 295.48781 * 26 7 6 52 52 H 1.08995 * 109.61339 * 174.97476 * 26 7 6 53 53 H 1.09000 * 109.60974 * 354.94970 * 27 4 2 54 54 H 1.09004 * 109.61091 * 115.29086 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1672 -0.0005 5 6 1.4633 -2.4451 -0.1091 6 6 2.0385 -3.2248 -1.3037 7 7 3.5037 -3.2427 -1.1895 8 6 4.1774 -4.4099 -1.1891 9 8 5.3865 -4.4121 -1.0939 10 6 3.4286 -5.7124 -1.3070 11 7 4.3625 -6.8321 -1.1286 12 6 4.6698 -7.0399 0.2928 13 6 5.8058 -8.0216 0.4229 14 1 6.2548 -8.4481 -0.4619 15 6 6.2724 -8.3743 1.6713 16 7 5.7261 -7.8545 2.7487 17 14 7.6810 -9.5907 1.8325 18 1 8.8799 -9.0544 1.1397 19 1 7.9916 -9.8008 3.2694 20 1 7.2907 -10.8845 1.2167 21 6 3.8347 -8.0600 -1.7381 22 6 3.9283 -7.9543 -3.2615 23 6 3.3712 -9.2300 -3.8965 24 6 1.8765 -9.3417 -3.5896 25 6 3.5783 -9.1781 -5.4115 26 6 4.2208 -1.9650 -1.0753 27 6 3.6460 -1.1850 0.1136 28 1 -0.3633 -1.0230 0.0982 29 1 -0.3634 0.5965 0.8368 30 1 -0.3634 0.4264 -0.9350 31 1 1.6000 -3.0204 0.8066 32 1 0.4020 -2.2562 -0.2704 33 1 1.7501 -2.7373 -2.2349 34 1 1.6583 -4.2463 -1.2926 35 1 2.6558 -5.7579 -0.5396 36 1 2.9666 -5.7780 -2.2922 37 1 4.9565 -6.0905 0.7451 38 1 3.7895 -7.4333 0.8011 39 1 6.0546 -8.1024 3.6271 40 1 4.4183 -8.9151 -1.3966 41 1 2.7927 -8.1916 -1.4463 42 1 3.3493 -7.0961 -3.6024 43 1 4.9709 -7.8285 -3.5536 44 1 3.8917 -10.0963 -3.4882 45 1 1.3560 -8.4754 -3.9979 46 1 1.4795 -10.2503 -4.0423 47 1 1.7289 -9.3787 -2.5102 48 1 4.6432 -9.0985 -5.6302 49 1 3.1811 -10.0867 -5.8639 50 1 3.0578 -8.3117 -5.8199 51 1 4.0876 -1.3877 -1.9903 52 1 5.2814 -2.1543 -0.9103 53 1 4.0265 -0.1637 0.0994 54 1 3.9344 -1.6699 1.0463 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173545251.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:53 Heat of formation + Delta-G solvation = -84.791218 kcal Electronic energy + Delta-G solvation = -31066.761532 eV Core-core repulsion = 27037.841112 eV Total energy + Delta-G solvation = -4028.920420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.57177 -40.50707 -38.82201 -37.89268 -36.52471 -35.13763 -34.62138 -33.10364 -30.58401 -30.42276 -30.15471 -28.35264 -27.90921 -26.72094 -24.80956 -24.42947 -23.72170 -22.08417 -20.99011 -20.62958 -19.47129 -18.57846 -18.49555 -17.51843 -17.30121 -16.97212 -16.76097 -16.62016 -16.38341 -16.08911 -15.68698 -15.53734 -15.12295 -14.88893 -14.71728 -14.54964 -14.24140 -14.14794 -14.09233 -13.75127 -13.61744 -13.55436 -13.14256 -12.99823 -12.96051 -12.95041 -12.66325 -12.61771 -12.56446 -12.45637 -12.38309 -12.29052 -12.03318 -11.94267 -11.52264 -11.37393 -11.33708 -11.17372 -10.90823 -10.69574 -10.58438 -10.32211 -9.39577 -8.90766 -8.19607 -6.27348 1.37376 1.41765 1.48885 1.53784 1.68843 1.75578 2.13738 2.40046 3.12995 3.25383 3.53155 3.64310 3.76178 3.99295 4.01411 4.07794 4.10392 4.14240 4.17872 4.22937 4.31627 4.35418 4.43150 4.46800 4.50472 4.63302 4.64410 4.69292 4.73086 4.74622 4.85664 4.88943 4.94157 4.94513 5.01332 5.08251 5.13788 5.14432 5.21369 5.31958 5.32963 5.35857 5.44904 5.49556 5.60364 5.61804 5.65955 6.06757 6.27727 6.39705 6.40591 6.67454 6.87249 7.08761 7.32247 7.40872 8.91295 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008698 B = 0.003325 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3218.534903 B = 8419.148543 C =10704.055990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.506 3.494 3 O -0.601 6.601 4 N -0.612 5.612 5 C 0.084 3.916 6 C 0.087 3.913 7 N -0.619 5.619 8 C 0.510 3.490 9 O -0.563 6.563 10 C 0.042 3.958 11 N -0.539 5.539 12 C 0.222 3.778 13 C -0.518 4.518 14 H 0.056 0.944 15 C 0.003 3.997 16 N -0.934 5.934 17 Si 0.962 3.038 18 H -0.277 1.277 19 H -0.281 1.281 20 H -0.262 1.262 21 C 0.067 3.933 22 C -0.097 4.097 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.140 4.140 26 C 0.107 3.893 27 C 0.102 3.898 28 H 0.112 0.888 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.071 0.929 32 H 0.149 0.851 33 H 0.099 0.901 34 H 0.117 0.883 35 H 0.070 0.930 36 H 0.129 0.871 37 H -0.008 1.008 38 H -0.032 1.032 39 H 0.263 0.737 40 H 0.055 0.945 41 H 0.040 0.960 42 H 0.070 0.930 43 H 0.045 0.955 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.061 0.939 47 H 0.047 0.953 48 H 0.046 0.954 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.082 0.918 52 H 0.076 0.924 53 H 0.094 0.906 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.490 7.317 -12.611 23.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.298 3.702 3 O -0.483 6.483 4 N -0.345 5.345 5 C -0.038 4.038 6 C -0.035 4.035 7 N -0.355 5.355 8 C 0.299 3.701 9 O -0.439 6.439 10 C -0.089 4.089 11 N -0.263 5.263 12 C 0.096 3.904 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.195 4.195 16 N -0.574 5.574 17 Si 0.787 3.213 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.187 1.187 21 C -0.060 4.060 22 C -0.135 4.135 23 C -0.116 4.116 24 C -0.201 4.201 25 C -0.198 4.198 26 C -0.017 4.017 27 C -0.022 4.022 28 H 0.131 0.869 29 H 0.118 0.882 30 H 0.129 0.871 31 H 0.089 0.911 32 H 0.166 0.834 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.087 0.913 36 H 0.147 0.853 37 H 0.010 0.990 38 H -0.014 1.014 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.080 0.920 47 H 0.066 0.934 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.100 0.900 52 H 0.095 0.905 53 H 0.112 0.888 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.087 7.950 -12.609 22.675 hybrid contribution 0.785 -0.579 1.287 1.615 sum -16.302 7.371 -11.322 21.172 Atomic orbital electron populations 1.22061 0.87553 1.06747 1.06400 1.21769 0.92572 0.82038 0.73823 1.90692 1.72075 1.32823 1.52662 1.48263 1.06631 1.07336 1.72312 1.22684 0.99217 0.83017 0.98910 1.22558 0.77648 1.03714 0.99571 1.48181 1.08564 1.04855 1.73908 1.21242 0.87808 0.86103 0.74982 1.90709 1.16676 1.87221 1.49283 1.22041 0.93746 0.89033 1.04109 1.61577 1.42702 1.04894 1.17145 1.19221 0.93677 0.94423 0.83073 1.21395 1.17379 1.24668 0.92158 0.92554 1.25829 0.99644 0.98600 0.95418 1.70059 1.43693 1.45477 0.98213 0.85543 0.79262 0.79428 0.77042 1.20211 1.20609 1.18684 1.22076 0.97290 0.91688 0.94943 1.21566 1.00621 0.98168 0.93100 1.21088 0.97134 0.96995 0.96370 1.21852 0.94586 1.02365 1.01272 1.21781 1.01363 1.02340 0.94282 1.21780 0.97476 0.83957 0.98495 1.21792 0.81076 1.01570 0.97768 0.86946 0.88160 0.87122 0.91106 0.83370 0.88311 0.86505 0.91252 0.85343 0.99005 1.01438 0.92841 0.92671 0.94226 0.91111 0.93573 0.92535 0.91545 0.91968 0.93382 0.93494 0.91759 0.91907 0.89961 0.90515 0.88763 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.44 10.03 71.24 0.71 -0.73 16 2 C 0.51 10.08 7.80 87.66 0.68 10.76 16 3 O -0.60 -18.03 16.51 -3.04 -0.05 -18.08 16 4 N -0.61 -11.72 2.94 -817.15 -2.40 -14.12 16 5 C 0.08 1.03 6.47 86.57 0.56 1.59 16 6 C 0.09 1.24 6.52 86.57 0.56 1.80 16 7 N -0.62 -16.03 2.95 -817.16 -2.41 -18.44 16 8 C 0.51 18.35 7.27 87.66 0.64 18.98 16 9 O -0.56 -27.27 15.18 -3.02 -0.05 -27.31 16 10 C 0.04 1.34 3.74 85.56 0.32 1.66 16 11 N -0.54 -23.18 3.93 -905.34 -3.55 -26.73 16 12 C 0.22 12.12 4.38 85.56 0.37 12.49 16 13 C -0.52 -30.66 8.27 25.60 0.21 -30.45 16 14 H 0.06 3.32 7.27 -2.91 -0.02 3.30 16 15 C 0.00 0.17 5.46 84.65 0.46 0.63 16 16 N -0.93 -57.76 13.29 21.44 0.28 -57.47 16 17 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 18 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 20 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 21 C 0.07 2.43 4.55 86.30 0.39 2.82 16 22 C -0.10 -2.73 4.77 30.60 0.15 -2.58 16 23 C -0.10 -2.21 2.92 -10.79 -0.03 -2.24 16 24 C -0.14 -2.71 8.95 71.98 0.64 -2.07 16 25 C -0.14 -2.63 9.19 71.98 0.66 -1.97 16 26 C 0.11 2.79 6.59 86.42 0.57 3.36 16 27 C 0.10 2.52 6.60 86.42 0.57 3.09 16 28 H 0.11 0.26 5.26 -2.39 -0.01 0.24 16 29 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.15 0.47 5.19 -2.39 -0.01 0.45 16 33 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.12 1.27 5.87 -2.39 -0.01 1.26 16 35 H 0.07 2.01 7.20 -2.39 -0.02 2.00 16 36 H 0.13 3.04 6.28 -2.38 -0.01 3.03 16 37 H -0.01 -0.51 7.16 -2.39 -0.02 -0.53 16 38 H -0.03 -1.81 8.12 -2.39 -0.02 -1.83 16 39 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.05 2.35 6.58 -2.38 -0.02 2.34 16 41 H 0.04 1.28 6.44 -2.38 -0.02 1.26 16 42 H 0.07 1.70 6.60 -2.39 -0.02 1.69 16 43 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.05 1.01 6.56 -2.39 -0.02 1.00 16 48 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 51 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 52 H 0.08 2.47 6.99 -2.39 -0.02 2.45 16 53 H 0.09 2.47 6.99 -2.39 -0.02 2.45 16 54 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -86.45 415.81 2.20 -84.25 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: 0.87 Total: 12.52 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 7.48 Total: 17.16 kcal Atomic # 7 Polarization: -108.69 SS G_CDS: -8.08 Total: -116.77 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.10 Total: -45.39 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -86.45 2.20 -84.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173545251.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.545 kcal (2) G-P(sol) polarization free energy of solvation -86.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds