Wall clock time and date at job start Sat Apr 11 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47510 * 2 1 4 4 C 1.52997 * 109.47176 * 120.00633 * 2 1 3 5 5 C 1.52995 * 109.47311 * 64.99630 * 4 2 1 6 6 C 1.50700 * 109.47067 * 180.02562 * 5 4 2 7 7 O 1.21280 * 120.00118 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00187 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00423 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47371 * 180.02562 * 9 8 6 11 11 O 1.21279 * 120.00135 * 359.97438 * 10 9 8 12 12 N 1.34781 * 119.99853 * 180.02562 * 10 9 8 13 13 C 1.46502 * 119.99565 * 180.02562 * 12 10 9 14 14 H 1.08998 * 110.81794 * 31.65839 * 13 12 10 15 15 C 1.54895 * 110.75342 * 268.32017 * 13 12 10 16 16 C 1.54259 * 104.19373 * 203.74566 * 15 13 12 17 17 C 1.53871 * 106.60160 * 23.61345 * 16 15 13 18 18 C 1.54260 * 106.59937 * 359.97438 * 17 16 15 19 19 H 1.09008 * 110.48690 * 95.20309 * 18 17 16 20 20 C 1.53001 * 110.48860 * 217.71147 * 18 17 16 21 21 N 1.46490 * 109.47264 * 293.54505 * 20 18 17 22 22 C 1.36935 * 120.00121 * 179.97438 * 21 20 18 23 23 H 1.07997 * 120.00139 * 0.02562 * 22 21 20 24 24 C 1.38816 * 120.00401 * 180.02562 * 22 21 20 25 25 N 1.31624 * 119.99569 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00172 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47055 * 180.02562 * 26 24 22 28 28 H 1.48505 * 109.46653 * 299.99639 * 26 24 22 29 29 H 1.48495 * 109.47483 * 60.00002 * 26 24 22 30 30 H 1.09007 * 109.46900 * 59.99510 * 1 2 3 31 31 H 1.08996 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46808 * 300.00064 * 1 2 3 33 33 H 1.09007 * 109.46934 * 240.00340 * 2 1 3 34 34 H 1.08999 * 109.47442 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47439 * 300.00159 * 3 2 1 36 36 H 1.08995 * 109.47138 * 60.00138 * 3 2 1 37 37 H 1.09005 * 109.46916 * 304.99461 * 4 2 1 38 38 H 1.08997 * 109.47083 * 184.99780 * 4 2 1 39 39 H 1.08993 * 109.47618 * 60.00149 * 5 4 2 40 40 H 1.09005 * 109.46961 * 299.99864 * 5 4 2 41 41 H 0.97004 * 120.00132 * 0.02562 * 8 6 5 42 42 H 1.09005 * 109.46971 * 60.00055 * 9 8 6 43 43 H 1.08997 * 109.47036 * 300.00369 * 9 8 6 44 44 H 0.96999 * 120.00166 * 359.97438 * 12 10 9 45 45 H 1.09004 * 110.48155 * 85.06826 * 15 13 12 46 46 H 1.09001 * 110.59996 * 322.48082 * 15 13 12 47 47 H 1.09005 * 110.03341 * 264.32198 * 16 15 13 48 48 H 1.09004 * 110.07194 * 142.92286 * 16 15 13 49 49 H 1.09000 * 110.03289 * 240.71026 * 17 16 15 50 50 H 1.08996 * 110.03704 * 119.28700 * 17 16 15 51 51 H 1.09003 * 109.46836 * 173.54212 * 20 18 17 52 52 H 1.08999 * 109.47071 * 53.55252 * 20 18 17 53 53 H 0.97000 * 120.00577 * 0.02562 * 21 20 18 54 54 H 0.97001 * 119.99885 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6352 -2.1955 1.1878 6 6 2.1371 -2.9059 2.4185 7 8 2.7578 -2.2935 3.2614 8 7 1.8961 -4.2217 2.5825 9 6 2.3844 -4.9124 3.7786 10 6 1.9856 -6.3644 3.7182 11 8 1.3551 -6.7812 2.7698 12 7 2.3287 -7.1996 4.7189 13 6 1.9414 -8.6113 4.6599 14 1 1.9089 -8.9613 3.6281 15 6 0.5777 -8.8360 5.3591 16 6 0.5983 -10.3259 5.7584 17 6 2.0785 -10.7358 5.8508 18 6 2.9058 -9.4810 5.5038 19 1 3.2003 -8.9550 6.4120 20 6 4.1397 -9.8629 4.6838 21 7 5.0492 -10.6587 5.5118 22 6 6.2281 -11.1173 4.9876 23 1 6.4877 -10.8920 3.9638 24 6 7.0897 -11.8718 5.7720 25 7 6.7731 -12.1469 7.0197 26 14 8.6983 -12.4968 5.0570 27 1 9.4315 -13.2712 6.0904 28 1 8.4148 -13.3723 3.8915 29 1 9.5270 -11.3444 4.6207 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9564 -0.8900 36 1 1.6768 1.9562 0.8900 37 1 1.6054 -0.2619 2.1369 38 1 3.1263 -0.6445 1.2950 39 1 2.0697 -2.6551 0.3001 40 1 0.5488 -2.2724 1.1419 41 1 1.3999 -4.7117 1.9081 42 1 1.9502 -4.4526 4.6664 43 1 3.4707 -4.8360 3.8242 44 1 2.8326 -6.8662 5.4777 45 1 -0.2422 -8.6373 4.6688 46 1 0.4917 -8.2051 6.2438 47 1 0.0921 -10.9229 4.9997 48 1 0.1123 -10.4610 6.7247 49 1 2.2907 -11.5318 5.1370 50 1 2.3112 -11.0691 6.8621 51 1 4.6489 -8.9584 4.3509 52 1 3.8329 -10.4472 3.8163 53 1 4.8159 -10.8614 6.4313 54 1 5.9379 -11.8220 7.3910 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753898231.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:49 Heat of formation + Delta-G solvation = -125.344590 kcal Electronic energy + Delta-G solvation = -29085.469793 eV Core-core repulsion = 25054.790847 eV Total energy + Delta-G solvation = -4030.678946 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.46448 -40.61144 -39.31321 -37.49249 -36.66992 -35.52595 -34.91330 -33.33296 -32.15155 -30.12230 -29.78412 -27.98340 -27.90835 -26.07392 -25.06058 -24.18948 -22.04287 -21.67840 -21.51044 -20.81906 -20.69655 -19.46689 -18.70742 -17.96605 -17.33364 -17.12289 -16.92538 -16.78042 -16.37959 -15.80155 -15.61858 -15.55917 -15.40505 -15.12156 -14.98941 -14.68373 -14.62116 -14.28164 -14.22139 -13.81860 -13.63958 -13.41874 -13.20936 -13.04765 -12.77774 -12.65265 -12.63010 -12.46631 -12.22294 -12.14326 -11.93599 -11.87408 -11.72751 -11.69021 -11.50843 -11.43716 -11.37637 -11.25687 -11.15144 -10.98335 -10.94674 -10.30485 -10.10745 -9.13272 -8.42165 -5.35849 1.40142 1.56949 1.59139 1.66350 1.72259 1.83203 2.40121 2.68605 3.32719 3.37508 3.53836 3.58258 3.74227 3.79697 3.88442 3.99252 4.02227 4.18847 4.24431 4.32001 4.32985 4.37994 4.38731 4.40842 4.44464 4.56111 4.57838 4.63799 4.67780 4.82323 4.86649 4.87275 4.95338 4.96575 5.05256 5.07798 5.11197 5.15627 5.18450 5.18810 5.21318 5.23825 5.35110 5.40544 5.48854 5.50311 5.55085 5.55460 6.37083 6.44242 6.48498 7.02992 7.07601 7.15580 7.98099 8.08773 9.09940 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012722 B = 0.001838 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.340495 B =15227.242362 C =16924.173953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 C -0.149 4.149 4 C -0.096 4.096 5 C -0.135 4.135 6 C 0.512 3.488 7 O -0.582 6.582 8 N -0.717 5.717 9 C 0.101 3.899 10 C 0.515 3.485 11 O -0.569 6.569 12 N -0.705 5.705 13 C 0.154 3.846 14 H 0.080 0.920 15 C -0.121 4.121 16 C -0.113 4.113 17 C -0.113 4.113 18 C -0.093 4.093 19 H 0.085 0.915 20 C 0.168 3.832 21 N -0.751 5.751 22 C -0.339 4.339 23 H 0.061 0.939 24 C -0.100 4.100 25 N -0.971 5.971 26 Si 1.126 2.874 27 H -0.290 1.290 28 H -0.279 1.279 29 H -0.279 1.279 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.051 0.949 35 H 0.062 0.938 36 H 0.050 0.950 37 H 0.056 0.944 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.417 0.583 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.415 0.585 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.049 0.951 50 H 0.061 0.939 51 H 0.013 0.987 52 H 0.009 0.991 53 H 0.363 0.637 54 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.839 22.107 -10.970 30.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.134 4.134 5 C -0.174 4.174 6 C 0.300 3.700 7 O -0.462 6.462 8 N -0.372 5.372 9 C -0.026 4.026 10 C 0.301 3.699 11 O -0.449 6.449 12 N -0.356 5.356 13 C 0.048 3.952 14 H 0.098 0.902 15 C -0.160 4.160 16 C -0.151 4.151 17 C -0.151 4.151 18 C -0.112 4.112 19 H 0.104 0.896 20 C 0.041 3.959 21 N -0.396 5.396 22 C -0.471 4.471 23 H 0.079 0.921 24 C -0.292 4.292 25 N -0.619 5.619 26 Si 0.951 3.049 27 H -0.216 1.216 28 H -0.206 1.206 29 H -0.205 1.205 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.135 0.865 41 H 0.255 0.745 42 H 0.131 0.869 43 H 0.119 0.881 44 H 0.252 0.748 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.068 0.932 50 H 0.080 0.920 51 H 0.031 0.969 52 H 0.027 0.973 53 H 0.196 0.804 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.427 21.420 -10.967 29.137 hybrid contribution -1.074 0.393 0.245 1.169 sum -17.501 21.813 -10.723 29.951 Atomic orbital electron populations 1.21925 0.94583 1.02385 1.01928 1.21132 0.96424 0.96239 0.97572 1.21843 1.00899 0.95946 1.01963 1.21362 1.00794 0.92936 0.98332 1.21795 1.04313 0.96206 0.95120 1.21381 0.78544 0.81209 0.88844 1.90702 1.42420 1.66812 1.46251 1.45807 1.58065 1.09750 1.23570 1.21066 1.01941 0.88426 0.91158 1.20703 0.78671 0.88531 0.81958 1.90677 1.41724 1.78181 1.34311 1.45822 1.56929 1.09149 1.23720 1.21859 0.94065 0.79484 0.99777 0.90171 1.22636 0.95833 0.96872 1.00624 1.22048 0.94994 0.95529 1.02577 1.22026 0.95258 0.96440 1.01358 1.22287 0.93740 0.96782 0.98414 0.89632 1.20709 0.89579 0.92704 0.92880 1.42477 1.20762 1.63948 1.12399 1.20363 0.98337 1.30339 0.98012 0.92130 1.27167 1.06968 0.99333 0.95716 1.70997 1.25599 1.50238 1.15066 0.82647 0.71793 0.76165 0.74311 1.21621 1.20555 1.20476 0.92132 0.91701 0.93055 0.90314 0.92999 0.91868 0.93038 0.92533 0.92726 0.86834 0.86496 0.74464 0.86943 0.88060 0.74767 0.91022 0.89825 0.91218 0.89985 0.93240 0.92048 0.96873 0.97287 0.80415 0.94444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.95 71.98 0.64 -0.62 16 2 C -0.10 -0.95 2.92 -10.80 -0.03 -0.98 16 3 C -0.15 -1.54 9.19 71.98 0.66 -0.88 16 4 C -0.10 -1.32 3.97 30.59 0.12 -1.20 16 5 C -0.13 -1.59 5.45 29.85 0.16 -1.43 16 6 C 0.51 9.79 7.83 87.66 0.69 10.47 16 7 O -0.58 -15.71 15.98 -3.03 -0.05 -15.76 16 8 N -0.72 -12.66 5.53 -466.80 -2.58 -15.24 16 9 C 0.10 1.82 6.15 85.63 0.53 2.35 16 10 C 0.51 11.15 7.90 87.65 0.69 11.84 16 11 O -0.57 -15.66 15.31 -3.03 -0.05 -15.71 16 12 N -0.71 -14.48 5.18 -436.46 -2.26 -16.74 16 13 C 0.15 3.75 2.69 46.28 0.12 3.87 16 14 H 0.08 2.33 7.47 -2.39 -0.02 2.31 16 15 C -0.12 -2.42 6.51 31.67 0.21 -2.22 16 16 C -0.11 -2.39 6.80 31.31 0.21 -2.17 16 17 C -0.11 -3.19 6.05 31.32 0.19 -3.00 16 18 C -0.09 -2.72 2.55 -9.73 -0.02 -2.74 16 19 H 0.09 2.41 8.02 -2.38 -0.02 2.39 16 20 C 0.17 6.72 5.57 86.38 0.48 7.20 16 21 N -0.75 -37.80 5.44 -343.47 -1.87 -39.67 16 22 C -0.34 -19.38 9.99 84.03 0.84 -18.54 16 23 H 0.06 3.43 7.83 -2.91 -0.02 3.40 16 24 C -0.10 -5.84 5.50 84.86 0.47 -5.38 16 25 N -0.97 -60.43 13.70 21.65 0.30 -60.13 16 26 Si 1.13 52.24 29.92 68.60 2.05 54.29 16 27 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 28 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 29 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 30 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.44 6.57 -2.39 -0.02 0.42 16 32 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 38 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 39 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.12 0.92 6.57 -2.38 -0.02 0.91 16 41 H 0.42 6.72 7.44 -92.71 -0.69 6.03 16 42 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 43 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.42 6.84 8.57 -92.71 -0.79 6.04 16 45 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 48 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.05 1.62 7.77 -2.39 -0.02 1.60 16 50 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 51 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 52 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 53 H 0.36 18.62 6.35 -92.71 -0.59 18.04 16 54 H 0.25 15.09 6.77 -92.71 -0.63 14.47 16 Total: -1.00 -75.14 430.14 0.47 -74.67 By element: Atomic # 1 Polarization: 38.76 SS G_CDS: -1.04 Total: 37.72 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 5.96 Total: -3.42 kcal Atomic # 7 Polarization: -125.38 SS G_CDS: -6.41 Total: -131.79 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.09 Total: -31.47 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 2.05 Total: 54.29 kcal Total: -75.14 0.47 -74.67 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753898231.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.673 kcal (2) G-P(sol) polarization free energy of solvation -75.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds