Wall clock time and date at job start Sat Apr 11 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47279 * 2 1 4 4 C 1.52999 * 109.47168 * 120.00308 * 2 1 3 5 5 C 1.52995 * 109.47396 * 172.48504 * 4 2 1 6 6 C 1.53001 * 109.46874 * 317.78650 * 5 4 2 7 7 C 1.52999 * 109.47280 * 197.78679 * 5 4 2 8 8 C 1.50704 * 109.47440 * 77.78324 * 5 4 2 9 9 O 1.21284 * 119.99435 * 11.86739 * 8 5 4 10 10 N 1.34770 * 120.00426 * 191.59003 * 8 5 4 11 11 C 1.46502 * 120.00098 * 179.97438 * 10 8 5 12 12 C 1.53002 * 109.46967 * 185.03631 * 11 10 8 13 13 N 1.46906 * 115.54640 * 260.84047 * 12 11 10 14 14 C 1.46897 * 110.99989 * 293.49749 * 13 12 11 15 15 C 1.50699 * 109.46995 * 185.21509 * 14 13 12 16 16 O 1.21292 * 120.00108 * 0.02562 * 15 14 13 17 17 N 1.34775 * 119.99845 * 179.97438 * 15 14 13 18 18 C 1.37103 * 119.99979 * 180.02562 * 17 15 14 19 19 H 1.08002 * 119.99785 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00194 * 180.02562 * 18 17 15 21 21 N 1.31416 * 119.99848 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 120.00034 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47031 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.46781 * 120.00200 * 22 20 18 25 25 H 1.48498 * 109.47095 * 239.99832 * 22 20 18 26 26 C 1.52996 * 117.49923 * 115.17169 * 12 11 10 27 27 C 1.52995 * 117.49880 * 46.50839 * 12 11 10 28 28 H 1.09001 * 109.46915 * 299.99809 * 1 2 3 29 29 H 1.08995 * 109.47376 * 59.99611 * 1 2 3 30 30 H 1.09004 * 109.47222 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46915 * 240.00191 * 2 1 3 32 32 H 1.08997 * 109.47008 * 306.65152 * 3 2 1 33 33 H 1.08998 * 109.47112 * 66.64464 * 3 2 1 34 34 H 1.08996 * 109.47055 * 186.64467 * 3 2 1 35 35 H 1.09004 * 109.47336 * 52.48009 * 4 2 1 36 36 H 1.09002 * 109.47221 * 292.48544 * 4 2 1 37 37 H 1.09000 * 109.47379 * 186.47904 * 6 5 4 38 38 H 1.09000 * 109.47043 * 306.48070 * 6 5 4 39 39 H 1.09000 * 109.46856 * 66.48073 * 6 5 4 40 40 H 1.09006 * 109.46825 * 299.99593 * 7 5 4 41 41 H 1.08995 * 109.47089 * 59.99709 * 7 5 4 42 42 H 1.08999 * 109.46991 * 180.02562 * 7 5 4 43 43 H 0.97000 * 119.99498 * 0.02562 * 10 8 5 44 44 H 1.08993 * 109.47151 * 305.03294 * 11 10 8 45 45 H 1.09000 * 109.46972 * 65.03646 * 11 10 8 46 46 H 1.00901 * 110.99364 * 169.54227 * 13 12 11 47 47 H 1.08996 * 109.46920 * 305.21465 * 14 13 12 48 48 H 1.08996 * 109.47350 * 65.21274 * 14 13 12 49 49 H 0.96997 * 120.00782 * 0.02562 * 17 15 14 50 50 H 0.96996 * 119.99783 * 180.02562 * 21 20 18 51 51 H 1.08998 * 117.49917 * 359.97438 * 26 12 11 52 52 H 1.09002 * 117.49609 * 145.01870 * 26 12 11 53 53 H 1.09011 * 117.49880 * 214.97889 * 27 12 11 54 54 H 1.08996 * 117.50510 * 359.97438 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5583 -0.8868 1.1585 6 6 3.9420 -1.3018 -0.2633 7 6 4.0137 -1.9642 2.1447 8 6 4.2273 0.4202 1.4980 9 8 3.5820 1.3220 1.9894 10 7 5.5437 0.5851 1.2609 11 6 6.1938 1.8559 1.5905 12 6 7.6464 1.8251 1.1106 13 7 8.6476 1.5184 2.1410 14 6 8.7201 2.5922 3.1407 15 6 9.8415 2.3053 4.1056 16 8 10.5145 1.3050 3.9732 17 7 10.0974 3.1609 5.1151 18 6 11.1180 2.9001 5.9926 19 1 11.7167 2.0090 5.8751 20 6 11.3814 3.7819 7.0337 21 7 10.6519 4.8655 7.1775 22 14 12.7716 3.4262 8.2298 23 1 13.4354 2.1526 7.8526 24 1 13.7609 4.5326 8.1818 25 1 12.2239 3.3112 9.6052 26 6 8.0465 2.8056 0.0064 27 6 7.9115 1.3133 -0.3066 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.5828 1.9895 -0.8245 33 1 1.7771 1.9208 0.9434 34 1 3.1235 1.4447 -0.1189 35 1 1.5710 -1.7028 1.3190 36 1 1.7906 -0.1358 2.1341 37 1 5.0069 -1.5312 -0.3000 38 1 3.3701 -2.1840 -0.5511 39 1 3.7221 -0.4858 -0.9517 40 1 3.7404 -1.6684 3.1577 41 1 3.5299 -2.9095 1.8991 42 1 5.0955 -2.0817 2.0804 43 1 6.0604 -0.1374 0.8713 44 1 5.6659 2.6725 1.0982 45 1 6.1708 2.0066 2.6697 46 1 9.5518 1.3480 1.7270 47 1 8.9055 3.5426 2.6403 48 1 7.7773 2.6462 3.6851 49 1 9.5595 3.9611 5.2209 50 1 10.8361 5.4811 7.9041 51 1 7.2749 3.4723 -0.3785 52 1 9.0528 3.2228 0.0442 53 1 8.8291 0.7493 -0.4746 54 1 7.0512 0.9980 -0.8971 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754530860.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:57 Heat of formation + Delta-G solvation = -87.765974 kcal Electronic energy + Delta-G solvation = -30537.043394 eV Core-core repulsion = 26507.993979 eV Total energy + Delta-G solvation = -4029.049415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61999 -40.42944 -39.39991 -37.65148 -36.06710 -35.50804 -34.37785 -33.83953 -33.22470 -28.69171 -28.38709 -28.13006 -27.68006 -27.34329 -25.90097 -23.98025 -23.20939 -21.24543 -21.15870 -20.81830 -19.95228 -19.66713 -18.05248 -17.77273 -17.18907 -16.95763 -16.77730 -16.44603 -16.22552 -15.85320 -15.83317 -15.47830 -15.07504 -14.75686 -14.66836 -14.50344 -14.12909 -13.81834 -13.72814 -13.57432 -13.52468 -13.45805 -13.28601 -13.03172 -12.98131 -12.91439 -12.80187 -12.46694 -12.43685 -12.42085 -12.37281 -12.12776 -11.91494 -11.83148 -11.58728 -11.54271 -11.31454 -11.26064 -11.07302 -10.52854 -10.36290 -10.05409 -9.97275 -9.30633 -8.49510 -5.98803 1.34843 1.40367 1.54877 1.75091 1.99589 2.15987 2.25985 2.61346 3.03832 3.17643 3.40578 3.57766 3.62702 3.74408 3.83266 3.89321 4.00017 4.15451 4.19002 4.24311 4.30173 4.42581 4.47551 4.52175 4.56593 4.66376 4.72674 4.74730 4.76892 4.81544 4.83653 4.89571 4.91563 4.95974 4.99234 5.00550 5.10239 5.13955 5.18324 5.22961 5.29313 5.37710 5.38450 5.40395 5.46207 5.50354 5.69543 5.82685 6.03332 6.31418 6.55142 6.64680 7.08567 7.35516 7.51300 8.05330 8.68104 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017125 B = 0.002136 C = 0.002064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.691787 B =13103.876067 C =13561.351015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.076 4.076 6 C -0.143 4.143 7 C -0.140 4.140 8 C 0.516 3.484 9 O -0.573 6.573 10 N -0.712 5.712 11 C 0.172 3.828 12 C 0.023 3.977 13 N -0.638 5.638 14 C 0.067 3.933 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.572 5.572 18 C -0.333 4.333 19 H 0.081 0.919 20 C -0.015 4.015 21 N -0.920 5.920 22 Si 0.995 3.005 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.272 1.272 26 C -0.200 4.200 27 C -0.144 4.144 28 H 0.041 0.959 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.041 0.959 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.049 0.951 37 H 0.070 0.930 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.042 0.958 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.411 0.589 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.351 0.649 47 H 0.068 0.932 48 H 0.094 0.906 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.109 0.891 52 H 0.093 0.907 53 H 0.105 0.895 54 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.355 -10.010 -19.868 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.115 4.115 3 C -0.193 4.193 4 C -0.132 4.132 5 C -0.080 4.080 6 C -0.201 4.201 7 C -0.197 4.197 8 C 0.304 3.696 9 O -0.452 6.452 10 N -0.364 5.364 11 C 0.047 3.953 12 C -0.069 4.069 13 N -0.269 5.269 14 C -0.065 4.065 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.209 5.209 18 C -0.463 4.463 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.561 5.561 22 Si 0.819 3.181 23 H -0.196 1.196 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.240 4.240 27 C -0.182 4.182 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.089 0.911 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.248 0.752 44 H 0.093 0.907 45 H 0.067 0.933 46 H 0.172 0.828 47 H 0.085 0.915 48 H 0.112 0.888 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.128 0.872 52 H 0.111 0.889 53 H 0.124 0.876 54 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.760 -10.259 -19.055 27.996 hybrid contribution 1.273 1.189 0.598 1.842 sum -16.487 -9.070 -18.457 26.358 Atomic orbital electron populations 1.21814 0.94803 1.02151 1.01409 1.21255 0.96052 0.95671 0.98548 1.21977 1.00016 0.96837 1.00443 1.21594 0.92086 1.01160 0.98406 1.20828 0.96523 0.91683 0.98924 1.22020 1.02668 1.02763 0.92601 1.21874 1.02086 0.98159 0.97608 1.21039 0.81643 0.89955 0.76981 1.90697 1.64609 1.44729 1.45189 1.45964 1.09169 1.16701 1.64568 1.20517 0.88484 0.86642 0.99624 1.21807 0.92023 1.06260 0.86854 1.59904 1.11542 1.41135 1.14338 1.21477 0.97172 0.94239 0.93614 1.20760 0.87797 0.84567 0.84347 1.90486 1.54104 1.30027 1.76237 1.41943 1.30824 1.22681 1.25404 1.19720 1.10592 1.08393 1.07580 0.90122 1.26100 1.01020 0.94894 0.99444 1.69687 1.40772 1.12323 1.33335 0.84839 0.77437 0.78354 0.77514 1.19626 1.19489 1.19680 1.23698 1.03458 0.93682 1.03208 1.23265 1.04688 0.96354 0.93854 0.93934 0.92360 0.91529 0.89256 0.93604 0.94014 0.93940 0.89553 0.93203 0.91134 0.89496 0.91729 0.93853 0.89129 0.91760 0.75220 0.90658 0.93294 0.82848 0.91463 0.88829 0.77049 0.91256 0.87220 0.88893 0.87616 0.86025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.19 71.98 0.66 -1.27 16 2 C -0.10 -1.46 2.40 -10.79 -0.03 -1.48 16 3 C -0.14 -2.72 7.36 71.98 0.53 -2.19 16 4 C -0.09 -1.54 4.00 30.59 0.12 -1.42 16 5 C -0.08 -1.20 0.67 -52.93 -0.04 -1.23 16 6 C -0.14 -1.41 6.90 71.98 0.50 -0.91 16 7 C -0.14 -2.06 8.38 71.98 0.60 -1.46 16 8 C 0.52 11.65 4.52 87.66 0.40 12.04 16 9 O -0.57 -17.41 12.42 -3.04 -0.04 -17.45 16 10 N -0.71 -14.40 5.09 -463.06 -2.36 -16.76 16 11 C 0.17 4.09 5.79 86.38 0.50 4.59 16 12 C 0.02 0.51 2.02 3.52 0.01 0.52 16 13 N -0.64 -19.54 6.38 -474.17 -3.03 -22.56 16 14 C 0.07 2.36 5.95 85.56 0.51 2.87 16 15 C 0.44 21.04 7.81 87.66 0.68 21.72 16 16 O -0.62 -34.26 15.66 -3.07 -0.05 -34.31 16 17 N -0.57 -29.84 5.29 -306.98 -1.62 -31.46 16 18 C -0.33 -19.12 9.68 84.04 0.81 -18.30 16 19 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 20 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 21 N -0.92 -50.38 13.05 21.66 0.28 -50.10 16 22 Si 1.00 43.28 29.55 68.60 2.03 45.30 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 C -0.20 -3.69 9.98 30.62 0.31 -3.38 16 27 C -0.14 -2.28 9.21 30.62 0.28 -2.00 16 28 H 0.04 0.66 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.09 1.04 5.97 -2.39 -0.01 1.03 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 1.07 6.96 -2.39 -0.02 1.06 16 34 H 0.04 0.91 5.00 -2.39 -0.01 0.90 16 35 H 0.09 1.05 8.00 -2.38 -0.02 1.04 16 36 H 0.05 1.12 7.24 -2.39 -0.02 1.10 16 37 H 0.07 0.55 7.27 -2.39 -0.02 0.53 16 38 H 0.09 0.57 8.13 -2.39 -0.02 0.55 16 39 H 0.06 0.68 5.89 -2.39 -0.01 0.66 16 40 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 41 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.41 6.64 6.74 -92.71 -0.62 6.01 16 44 H 0.08 1.75 7.87 -2.39 -0.02 1.74 16 45 H 0.05 1.45 6.72 -2.39 -0.02 1.44 16 46 H 0.35 11.23 8.10 -89.69 -0.73 10.50 16 47 H 0.07 2.12 8.04 -2.39 -0.02 2.10 16 48 H 0.09 3.21 6.89 -2.39 -0.02 3.20 16 49 H 0.40 19.81 7.90 -92.71 -0.73 19.07 16 50 H 0.28 14.19 8.31 -92.71 -0.77 13.42 16 51 H 0.11 1.77 8.03 -2.39 -0.02 1.75 16 52 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 53 H 0.11 1.64 8.14 -2.38 -0.02 1.62 16 54 H 0.12 1.43 7.90 -2.39 -0.02 1.42 16 Total: -1.00 -71.00 419.53 0.37 -70.63 By element: Atomic # 1 Polarization: 50.12 SS G_CDS: -1.17 Total: 48.96 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 6.32 Total: 7.76 kcal Atomic # 7 Polarization: -114.16 SS G_CDS: -6.73 Total: -120.88 kcal Atomic # 8 Polarization: -51.68 SS G_CDS: -0.09 Total: -51.76 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -71.00 0.37 -70.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754530860.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.133 kcal (2) G-P(sol) polarization free energy of solvation -70.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds