Wall clock time and date at job start Sat Apr 11 2020 05:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.46930 * 2 1 4 4 C 1.52999 * 109.47064 * 119.99663 * 2 1 3 5 5 C 1.53000 * 109.47086 * 175.00375 * 4 2 1 6 6 C 1.53004 * 109.47401 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47467 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99742 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00030 * 180.02562 * 7 6 5 10 10 C 1.47425 * 125.64755 * 4.88571 * 9 7 6 11 11 C 1.54906 * 104.83101 * 204.16489 * 10 9 7 12 12 C 1.55159 * 101.58403 * 322.99347 * 11 10 9 13 13 C 1.47021 * 125.64627 * 184.93243 * 9 7 6 14 14 H 1.08995 * 109.88233 * 59.48411 * 13 9 7 15 15 C 1.52992 * 109.88284 * 298.31769 * 13 9 7 16 16 N 1.46898 * 109.47323 * 175.11028 * 15 13 9 17 17 C 1.46899 * 111.00198 * 184.90640 * 16 15 13 18 18 C 1.50697 * 109.47071 * 180.02562 * 17 16 15 19 19 O 1.21293 * 120.00265 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00286 * 179.97438 * 18 17 16 21 21 C 1.37096 * 120.00716 * 179.97438 * 20 18 17 22 22 H 1.08002 * 119.99581 * 0.02562 * 21 20 18 23 23 C 1.38950 * 120.00324 * 180.02562 * 21 20 18 24 24 N 1.31407 * 120.00012 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99863 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46992 * 90.00062 * 25 23 21 27 27 H 1.48499 * 109.47020 * 209.99917 * 25 23 21 28 28 H 1.48500 * 109.46867 * 330.00028 * 25 23 21 29 29 H 1.09004 * 109.47829 * 300.00033 * 1 2 3 30 30 H 1.09001 * 109.47598 * 60.00651 * 1 2 3 31 31 H 1.09008 * 109.47036 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47829 * 239.99967 * 2 1 3 33 33 H 1.09001 * 109.47038 * 59.99909 * 3 2 1 34 34 H 1.09001 * 109.46922 * 179.97438 * 3 2 1 35 35 H 1.08996 * 109.47114 * 299.99892 * 3 2 1 36 36 H 1.08993 * 109.47269 * 55.00701 * 4 2 1 37 37 H 1.09002 * 109.47451 * 294.99858 * 4 2 1 38 38 H 1.08996 * 109.47299 * 60.00156 * 5 4 2 39 39 H 1.08996 * 109.47198 * 300.00189 * 5 4 2 40 40 H 1.09009 * 109.46961 * 59.99890 * 6 5 4 41 41 H 1.08996 * 109.47107 * 300.00255 * 6 5 4 42 42 H 1.09001 * 110.36634 * 323.00890 * 10 9 7 43 43 H 1.08998 * 110.36581 * 85.33053 * 10 9 7 44 44 H 1.08997 * 111.00127 * 81.07175 * 11 10 9 45 45 H 1.08999 * 111.00778 * 204.91706 * 11 10 9 46 46 H 1.08996 * 110.71732 * 277.13524 * 12 11 10 47 47 H 1.09001 * 110.71974 * 153.86388 * 12 11 10 48 48 H 1.09002 * 109.47392 * 295.11157 * 15 13 9 49 49 H 1.09010 * 109.47295 * 55.10848 * 15 13 9 50 50 H 1.00902 * 110.99690 * 308.85142 * 16 15 13 51 51 H 1.09004 * 109.46954 * 299.99554 * 17 16 15 52 52 H 1.08997 * 109.47367 * 59.99420 * 17 16 15 53 53 H 0.97001 * 119.99645 * 359.97438 * 20 18 17 54 54 H 0.97002 * 119.99996 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5647 -0.8309 1.1881 6 6 4.0749 -1.5515 2.4377 7 6 5.5767 -1.6601 2.3771 8 8 6.1797 -1.2063 1.4277 9 7 6.2497 -2.2625 3.3774 10 6 5.6408 -2.9447 4.5338 11 6 6.7266 -2.8995 5.6377 12 6 8.0227 -3.0989 4.8083 13 6 7.7126 -2.3473 3.4966 14 1 8.1402 -1.3454 3.5335 15 6 8.2878 -3.1181 2.3068 16 7 9.7552 -3.0970 2.3728 17 6 10.3447 -3.7279 1.1844 18 6 11.8476 -3.6881 1.2880 19 8 12.3757 -3.1834 2.2563 20 7 12.6051 -4.2133 0.3046 21 6 13.9723 -4.1767 0.3985 22 1 14.4425 -3.7273 1.2607 23 6 14.7531 -4.7177 -0.6156 24 7 14.1811 -5.2641 -1.6648 25 14 16.6161 -4.6683 -0.4872 26 1 17.0976 -5.8943 0.1986 27 1 17.2044 -4.5994 -1.8489 28 1 17.0271 -3.4721 0.2908 29 1 -0.3635 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6054 -1.7197 1.2952 37 1 1.7516 -0.1582 2.1370 38 1 3.9993 0.1676 1.1422 39 1 3.8532 -1.3938 0.3004 40 1 3.6403 -2.5502 2.4841 41 1 3.7865 -0.9882 3.3251 42 1 4.7462 -2.4139 4.8596 43 1 5.3995 -3.9772 4.2813 44 1 6.7305 -1.9334 6.1425 45 1 6.5914 -3.7113 6.3524 46 1 8.1973 -4.1572 4.6144 47 1 8.8778 -2.6524 5.3157 48 1 7.9375 -4.1498 2.3386 49 1 7.9591 -2.6513 1.3782 50 1 10.0983 -2.1554 2.4900 51 1 10.0127 -4.7642 1.1207 52 1 10.0272 -3.1891 0.2917 53 1 12.1828 -4.6173 -0.4696 54 1 14.7262 -5.6421 -2.3726 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754618209.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:01 Heat of formation + Delta-G solvation = -122.368331 kcal Electronic energy + Delta-G solvation = -29247.794322 eV Core-core repulsion = 25217.244437 eV Total energy + Delta-G solvation = -4030.549886 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.32212 -40.18093 -38.86434 -37.74363 -36.65075 -35.81680 -33.87539 -33.30543 -32.47164 -31.32763 -28.43753 -28.06687 -27.93085 -26.39591 -24.92205 -23.77490 -22.77590 -21.69198 -21.17398 -20.86339 -20.04438 -19.72107 -18.14827 -17.97621 -17.32057 -16.93156 -16.67890 -16.54062 -16.12115 -15.95164 -15.59363 -15.23936 -15.17705 -14.97467 -14.87300 -14.66893 -14.31505 -14.06107 -14.00117 -13.64053 -13.50260 -13.27224 -13.22583 -13.07054 -13.01829 -12.86915 -12.70134 -12.59309 -12.47242 -12.44223 -12.13085 -12.02656 -11.88609 -11.82346 -11.60440 -11.53141 -11.52489 -11.43498 -11.30776 -10.82158 -10.40843 -10.05074 -9.68819 -9.43900 -8.48841 -5.98411 1.36984 1.40474 1.53970 1.62414 1.91600 2.00242 2.28134 2.91378 3.17600 3.41449 3.54178 3.69860 3.81276 3.85900 3.89552 3.98491 4.12802 4.20886 4.22801 4.26526 4.30774 4.35760 4.40415 4.46472 4.50308 4.61603 4.67461 4.68877 4.75086 4.76203 4.83329 4.87373 4.90511 4.97197 5.03444 5.06107 5.06497 5.10943 5.18149 5.23444 5.31900 5.34737 5.38477 5.41052 5.44072 5.53883 5.56882 5.78447 6.01775 6.23977 6.55942 6.56360 7.08878 7.17331 7.51413 8.06140 8.68713 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.001828 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.524088 B =15313.118367 C =16929.648434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C -0.150 4.150 4 C -0.106 4.106 5 C -0.104 4.104 6 C -0.124 4.124 7 C 0.514 3.486 8 O -0.589 6.589 9 N -0.616 5.616 10 C 0.095 3.905 11 C -0.126 4.126 12 C -0.113 4.113 13 C 0.139 3.861 14 H 0.054 0.946 15 C 0.059 3.941 16 N -0.666 5.666 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.997 3.003 26 H -0.269 1.269 27 H -0.270 1.270 28 H -0.272 1.272 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.046 0.954 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.077 0.923 49 H 0.023 0.977 50 H 0.341 0.659 51 H 0.104 0.896 52 H 0.054 0.946 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.081 5.531 10.918 33.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.208 4.208 4 C -0.143 4.143 5 C -0.143 4.143 6 C -0.163 4.163 7 C 0.305 3.695 8 O -0.469 6.469 9 N -0.350 5.350 10 C -0.026 4.026 11 C -0.164 4.164 12 C -0.151 4.151 13 C 0.034 3.966 14 H 0.072 0.928 15 C -0.071 4.071 16 N -0.298 5.298 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.506 6.506 20 N -0.209 5.209 21 C -0.466 4.466 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.125 0.875 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.125 0.875 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.095 0.905 49 H 0.041 0.959 50 H 0.159 0.841 51 H 0.122 0.878 52 H 0.072 0.928 53 H 0.229 0.771 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -30.365 5.478 11.210 32.828 hybrid contribution 1.100 0.535 -1.631 2.039 sum -29.265 6.013 9.579 31.374 Atomic orbital electron populations 1.21814 0.94272 1.02069 1.01989 1.21142 0.96367 0.96154 0.98386 1.21901 1.00593 0.96355 1.01923 1.21606 0.93279 1.01290 0.98119 1.21366 0.96287 1.00134 0.96465 1.21711 0.88243 1.04747 1.01630 1.21318 0.91646 0.76173 0.80339 1.90706 1.71654 1.50223 1.34331 1.48759 1.06274 1.55426 1.24514 1.22653 0.97587 0.98170 0.84165 1.22838 0.92538 1.04083 0.96941 1.22542 0.98990 1.00777 0.92825 1.21434 0.80948 0.98373 0.95803 0.92764 1.22273 0.86689 1.00554 0.97622 1.60120 1.05687 1.25347 1.38631 1.21510 0.90614 1.01881 0.92680 1.20693 0.89874 0.82914 0.83797 1.90478 1.75292 1.50772 1.34045 1.41928 1.06399 1.52520 1.20063 1.19711 0.82310 1.38056 1.06499 0.90118 1.26107 1.05238 0.95639 0.94381 1.69683 1.38300 1.38840 1.09355 0.84873 0.76375 0.78848 0.77886 1.19407 1.19507 1.19720 0.92094 0.92883 0.92219 0.92347 0.92068 0.93668 0.92854 0.90700 0.90630 0.92864 0.93495 0.86599 0.86383 0.87528 0.89854 0.90170 0.87468 0.90448 0.90506 0.90474 0.95895 0.84106 0.87751 0.92824 0.77066 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.68 16 2 C -0.10 -1.23 2.92 -10.79 -0.03 -1.26 16 3 C -0.15 -1.99 8.95 71.98 0.64 -1.34 16 4 C -0.11 -1.09 4.68 30.59 0.14 -0.94 16 5 C -0.10 -1.64 4.26 30.60 0.13 -1.51 16 6 C -0.12 -1.57 4.63 29.85 0.14 -1.43 16 7 C 0.51 11.60 7.67 87.66 0.67 12.27 16 8 O -0.59 -19.48 14.78 -3.03 -0.04 -19.53 16 9 N -0.62 -11.90 3.06 -788.08 -2.42 -14.32 16 10 C 0.10 0.96 6.74 86.85 0.59 1.54 16 11 C -0.13 -1.34 7.08 31.99 0.23 -1.12 16 12 C -0.11 -2.15 6.29 31.78 0.20 -1.95 16 13 C 0.14 3.35 3.04 45.34 0.14 3.49 16 14 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 15 C 0.06 1.73 5.10 86.30 0.44 2.17 16 16 N -0.67 -23.59 5.96 -517.94 -3.09 -26.67 16 17 C 0.07 2.55 6.16 85.56 0.53 3.08 16 18 C 0.44 22.24 7.82 87.66 0.69 22.93 16 19 O -0.62 -35.69 15.78 -3.07 -0.05 -35.74 16 20 N -0.57 -30.87 5.29 -306.98 -1.62 -32.49 16 21 C -0.34 -19.75 9.68 84.04 0.81 -18.94 16 22 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -51.16 13.05 21.66 0.28 -50.88 16 25 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 26 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 28 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 29 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.04 0.73 6.56 -2.39 -0.02 0.71 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.05 1.04 6.52 -2.39 -0.02 1.02 16 39 H 0.05 0.94 8.10 -2.39 -0.02 0.92 16 40 H 0.12 0.92 8.14 -2.38 -0.02 0.91 16 41 H 0.12 0.89 7.95 -2.39 -0.02 0.87 16 42 H 0.11 0.47 7.47 -2.39 -0.02 0.45 16 43 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.79 16 45 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.08 1.58 7.77 -2.39 -0.02 1.56 16 47 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 48 H 0.08 2.13 8.03 -2.39 -0.02 2.11 16 49 H 0.02 0.79 6.55 -2.38 -0.02 0.77 16 50 H 0.34 12.92 8.35 -89.69 -0.75 12.17 16 51 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 52 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.40 20.41 7.90 -92.71 -0.73 19.67 16 54 H 0.28 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -75.82 429.42 0.93 -74.89 By element: Atomic # 1 Polarization: 43.40 SS G_CDS: -0.60 Total: 42.80 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: 6.44 Total: 15.99 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -6.84 Total: -124.35 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: -0.09 Total: -55.27 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -75.82 0.93 -74.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754618209.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.476 kcal (2) G-P(sol) polarization free energy of solvation -75.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds