Wall clock time and date at job start Sat Apr 11 2020 05:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47078 * 2 1 4 4 C 1.52998 * 109.47398 * 179.97438 * 3 2 1 5 5 C 1.53011 * 109.46748 * 60.00436 * 4 3 2 6 6 C 1.52994 * 109.47209 * 300.00574 * 4 3 2 7 7 C 1.50697 * 109.47091 * 179.97438 * 4 3 2 8 8 O 1.21285 * 120.00061 * 0.02562 * 7 4 3 9 9 N 1.34771 * 119.99859 * 180.02562 * 7 4 3 10 10 C 1.46507 * 120.00094 * 179.97438 * 9 7 4 11 11 C 1.53002 * 109.47137 * 174.81788 * 10 9 7 12 12 N 1.46896 * 112.90614 * 310.79869 * 11 10 9 13 13 C 1.46904 * 111.00352 * 292.29255 * 12 11 10 14 14 C 1.50701 * 109.47471 * 174.70119 * 13 12 11 15 15 O 1.21295 * 119.99684 * 0.02562 * 14 13 12 16 16 N 1.34769 * 119.99890 * 180.02562 * 14 13 12 17 17 C 1.37102 * 119.99426 * 180.02562 * 16 14 13 18 18 H 1.07994 * 120.00692 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99493 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00247 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99859 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47572 * 59.99867 * 21 19 17 23 23 H 1.48506 * 109.47275 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47198 * 300.00075 * 21 19 17 25 25 C 1.53784 * 113.60991 * 179.54848 * 11 10 9 26 26 C 1.53781 * 87.07725 * 220.01775 * 25 11 10 27 27 C 1.53774 * 113.61330 * 82.05047 * 11 10 9 28 28 H 1.08993 * 109.47499 * 60.00390 * 1 2 3 29 29 H 1.09004 * 109.46757 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47558 * 299.99291 * 1 2 3 31 31 H 1.09006 * 109.47226 * 240.00379 * 2 1 3 32 32 H 1.09003 * 109.47745 * 120.00363 * 2 1 3 33 33 H 1.09006 * 109.46782 * 60.00107 * 3 2 1 34 34 H 1.09003 * 109.47128 * 300.00741 * 3 2 1 35 35 H 1.08998 * 109.46629 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.46923 * 299.99594 * 5 4 3 37 37 H 1.08993 * 109.46973 * 59.99663 * 5 4 3 38 38 H 1.08997 * 109.47091 * 299.99471 * 6 4 3 39 39 H 1.08995 * 109.47789 * 59.99670 * 6 4 3 40 40 H 1.09006 * 109.47200 * 179.97438 * 6 4 3 41 41 H 0.97001 * 120.00643 * 0.02562 * 9 7 4 42 42 H 1.09005 * 109.46703 * 54.82016 * 10 9 7 43 43 H 1.08991 * 109.47108 * 294.82320 * 10 9 7 44 44 H 1.00909 * 111.00015 * 168.34402 * 12 11 10 45 45 H 1.09006 * 109.46968 * 294.70498 * 13 12 11 46 46 H 1.09000 * 109.46808 * 54.70317 * 13 12 11 47 47 H 0.96993 * 120.00660 * 359.97438 * 16 14 13 48 48 H 0.97003 * 119.99849 * 180.02562 * 20 19 17 49 49 H 1.08998 * 113.61213 * 105.47281 * 25 11 10 50 50 H 1.08993 * 113.61953 * 334.56429 * 25 11 10 51 51 H 1.09002 * 113.61671 * 139.98003 * 26 25 11 52 52 H 1.09003 * 113.61799 * 270.88256 * 26 25 11 53 53 H 1.09004 * 113.61348 * 25.43290 * 27 11 10 54 54 H 1.08998 * 113.69249 * 254.54129 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0804 0.7213 -1.2484 6 6 4.0795 0.7215 1.2501 7 6 4.0722 2.8634 0.0000 8 8 3.2840 3.7853 -0.0004 9 7 5.3972 3.1098 -0.0001 10 6 5.8855 4.4911 -0.0013 11 6 7.4100 4.4932 0.1291 12 7 7.8912 3.6420 1.2254 13 6 7.5035 4.1946 2.5302 14 6 7.8990 3.2326 3.6207 15 8 8.4500 2.1895 3.3388 16 7 7.6403 3.5313 4.9092 17 6 8.0006 2.6563 5.9013 18 1 8.4912 1.7276 5.6503 19 6 7.7344 2.9646 7.2298 20 7 7.1370 4.0945 7.5352 21 14 8.2258 1.7728 8.5816 22 1 9.6960 1.5660 8.5490 23 1 7.8343 2.3316 9.9007 24 1 7.5384 0.4735 8.3701 25 6 8.0264 5.9021 0.1269 26 6 9.1520 5.3226 -0.7461 27 6 8.1424 4.2560 -1.2020 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 1.6766 1.9563 0.8901 34 1 1.6765 1.9564 -0.8899 35 1 5.1704 0.7209 -1.2477 36 1 3.7172 -0.3065 -1.2484 37 1 3.7174 1.2350 -2.1385 38 1 3.7158 1.2354 2.1399 39 1 3.7162 -0.3061 1.2501 40 1 5.1695 0.7212 1.2503 41 1 6.0276 2.3726 -0.0001 42 1 5.4483 5.0317 0.8382 43 1 5.6000 4.9765 -0.9344 44 1 8.8904 3.5119 1.1703 45 1 8.0089 5.1478 2.6857 46 1 6.4245 4.3472 2.5540 47 1 7.2000 4.3656 5.1347 48 1 6.9515 4.3098 8.4627 49 1 8.3624 6.2332 1.1095 50 1 7.4153 6.6452 -0.3852 51 1 9.4724 5.9906 -1.5456 52 1 9.9855 4.9178 -0.1719 53 1 7.5629 4.5493 -2.0775 54 1 8.5723 3.2586 -1.2937 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754986082.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:05 Heat of formation + Delta-G solvation = -97.846861 kcal Electronic energy + Delta-G solvation = -31136.534678 eV Core-core repulsion = 27107.048124 eV Total energy + Delta-G solvation = -4029.486555 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55574 -40.70950 -39.75748 -37.60217 -36.01653 -35.47897 -34.29959 -33.38924 -33.21354 -29.25474 -28.28106 -28.18076 -27.37744 -26.75393 -25.80750 -24.61960 -23.08050 -21.81018 -21.08025 -20.25199 -19.91151 -19.47625 -17.96391 -17.69070 -17.23271 -17.01810 -16.55534 -16.41423 -16.15989 -15.87388 -15.79377 -15.59821 -15.17377 -15.05155 -14.82414 -14.53006 -14.16364 -13.96818 -13.93596 -13.67216 -13.53254 -13.32581 -13.27284 -13.13298 -13.05814 -12.90283 -12.71360 -12.61492 -12.50106 -12.43206 -12.13885 -11.96602 -11.81647 -11.68595 -11.65449 -11.53477 -11.49169 -11.32256 -11.13558 -10.60041 -10.34670 -10.01954 -9.96877 -9.36955 -8.46711 -5.95716 1.39145 1.40901 1.51913 1.68904 2.04638 2.23585 2.30137 2.82567 3.20273 3.43980 3.53639 3.64179 3.70325 3.77739 3.80527 3.89128 3.92952 4.21971 4.25570 4.27403 4.32819 4.35207 4.45783 4.49380 4.57612 4.63983 4.70203 4.73257 4.80554 4.82351 4.83864 4.85716 4.92704 4.94344 5.07175 5.07351 5.10515 5.12789 5.18451 5.20975 5.22679 5.33950 5.37118 5.40364 5.46808 5.51169 5.55178 5.88983 6.07901 6.37875 6.58617 6.65003 7.11818 7.30877 7.55452 8.09807 8.70549 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007556 B = 0.003590 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3704.987857 B = 7797.590017 C =10588.784956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.090 4.090 4 C -0.076 4.076 5 C -0.136 4.136 6 C -0.139 4.139 7 C 0.513 3.487 8 O -0.591 6.591 9 N -0.702 5.702 10 C 0.143 3.857 11 C 0.078 3.922 12 N -0.643 5.643 13 C 0.069 3.931 14 C 0.443 3.557 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.332 4.332 18 H 0.082 0.918 19 C -0.014 4.014 20 N -0.923 5.923 21 Si 0.992 3.008 22 H -0.270 1.270 23 H -0.272 1.272 24 H -0.271 1.271 25 C -0.167 4.167 26 C -0.136 4.136 27 C -0.118 4.118 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.036 0.964 39 H 0.089 0.911 40 H 0.058 0.942 41 H 0.413 0.587 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.352 0.648 45 H 0.064 0.936 46 H 0.086 0.914 47 H 0.393 0.607 48 H 0.277 0.723 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.087 0.913 52 H 0.075 0.925 53 H 0.104 0.896 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.646 -1.875 -20.063 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.128 4.128 4 C -0.079 4.079 5 C -0.193 4.193 6 C -0.196 4.196 7 C 0.301 3.699 8 O -0.472 6.472 9 N -0.352 5.352 10 C 0.018 3.982 11 C -0.014 4.014 12 N -0.275 5.275 13 C -0.064 4.064 14 C 0.230 3.770 15 O -0.500 6.500 16 N -0.212 5.212 17 C -0.461 4.461 18 H 0.100 0.900 19 C -0.214 4.214 20 N -0.564 5.564 21 Si 0.816 3.184 22 H -0.195 1.195 23 H -0.197 1.197 24 H -0.196 1.196 25 C -0.207 4.207 26 C -0.173 4.173 27 C -0.156 4.156 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.250 0.750 42 H 0.063 0.937 43 H 0.098 0.902 44 H 0.172 0.828 45 H 0.082 0.918 46 H 0.104 0.896 47 H 0.226 0.774 48 H 0.086 0.914 49 H 0.080 0.920 50 H 0.119 0.881 51 H 0.105 0.895 52 H 0.093 0.907 53 H 0.122 0.878 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.391 -2.267 -20.087 20.921 hybrid contribution 0.759 0.821 1.523 1.890 sum -4.631 -1.446 -18.564 19.188 Atomic orbital electron populations 1.21769 0.95539 1.02119 1.01560 1.21668 0.96153 0.95180 1.03086 1.21381 0.91890 0.97890 1.01656 1.20789 0.97370 0.90833 0.98875 1.21903 1.01652 1.01371 0.94412 1.21885 1.01273 1.01419 0.95053 1.21118 0.82316 0.91917 0.74587 1.90640 1.56507 1.47759 1.52273 1.45798 1.06613 1.09405 1.73425 1.21284 0.92269 0.83393 1.01257 1.22433 0.92711 0.93049 0.93207 1.59870 1.20499 1.47688 0.99421 1.21402 1.01508 0.94968 0.88496 1.20701 0.83629 0.88849 0.83815 1.90485 1.48094 1.28379 1.83075 1.41942 1.53582 1.20641 1.05053 1.19639 1.37802 1.02125 0.86575 0.90015 1.26055 0.96530 0.98709 1.00069 1.69679 1.42018 1.24024 1.20636 0.84999 0.78793 0.77891 0.76739 1.19480 1.19709 1.19638 1.23625 0.98999 0.97067 1.00992 1.22791 0.96277 0.98463 0.99796 1.23068 0.97169 1.00282 0.95042 0.92631 0.91546 0.93652 0.90024 0.91495 0.93841 0.92126 0.91469 0.89305 0.91995 0.94514 0.89185 0.92333 0.74956 0.93747 0.90217 0.82773 0.91789 0.89631 0.77363 0.91386 0.92031 0.88148 0.89462 0.90665 0.87772 0.90460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.91 71.98 0.71 -1.72 16 2 C -0.12 -2.09 5.23 30.59 0.16 -1.93 16 3 C -0.09 -2.05 3.56 30.60 0.11 -1.94 16 4 C -0.08 -1.72 0.64 -52.93 -0.03 -1.75 16 5 C -0.14 -2.23 8.02 71.99 0.58 -1.66 16 6 C -0.14 -3.37 8.02 71.98 0.58 -2.80 16 7 C 0.51 14.78 6.48 87.66 0.57 15.35 16 8 O -0.59 -21.37 15.98 -3.04 -0.05 -21.42 16 9 N -0.70 -17.84 5.17 -463.05 -2.39 -20.24 16 10 C 0.14 3.45 4.71 86.38 0.41 3.86 16 11 C 0.08 1.65 0.74 4.05 0.00 1.65 16 12 N -0.64 -18.10 5.39 -471.53 -2.54 -20.64 16 13 C 0.07 2.34 5.78 85.56 0.49 2.84 16 14 C 0.44 20.67 7.83 87.66 0.69 21.36 16 15 O -0.61 -32.58 15.89 -3.08 -0.05 -32.63 16 16 N -0.58 -29.64 5.29 -306.99 -1.62 -31.26 16 17 C -0.33 -18.80 9.68 84.04 0.81 -17.99 16 18 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 19 C -0.01 -0.76 5.50 84.93 0.47 -0.29 16 20 N -0.92 -50.52 13.05 21.66 0.28 -50.23 16 21 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 22 H -0.27 -11.44 7.11 99.48 0.71 -10.74 16 23 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 C -0.17 -3.07 7.16 31.12 0.22 -2.85 16 26 C -0.14 -2.12 7.75 31.12 0.24 -1.88 16 27 C -0.12 -1.88 7.31 31.12 0.23 -1.65 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.78 16 31 H 0.08 1.11 6.43 -2.38 -0.02 1.10 16 32 H 0.07 1.14 6.43 -2.39 -0.02 1.12 16 33 H 0.04 1.19 8.10 -2.38 -0.02 1.17 16 34 H 0.06 1.43 8.10 -2.39 -0.02 1.42 16 35 H 0.07 1.03 7.56 -2.39 -0.02 1.02 16 36 H 0.09 1.14 6.43 -2.38 -0.02 1.12 16 37 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.09 1.77 6.43 -2.39 -0.02 1.75 16 40 H 0.06 1.52 7.57 -2.38 -0.02 1.50 16 41 H 0.41 10.00 6.98 -92.71 -0.65 9.36 16 42 H 0.04 1.28 7.29 -2.38 -0.02 1.26 16 43 H 0.08 1.75 7.95 -2.39 -0.02 1.73 16 44 H 0.35 10.15 7.79 -89.69 -0.70 9.45 16 45 H 0.06 1.98 6.69 -2.38 -0.02 1.96 16 46 H 0.09 2.96 6.85 -2.39 -0.02 2.95 16 47 H 0.39 19.69 7.90 -92.71 -0.73 18.95 16 48 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.06 1.29 6.61 -2.39 -0.02 1.27 16 50 H 0.10 1.59 8.10 -2.39 -0.02 1.57 16 51 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 52 H 0.07 1.29 7.75 -2.39 -0.02 1.27 16 53 H 0.10 1.36 7.97 -2.38 -0.02 1.35 16 54 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -69.18 421.36 0.73 -68.46 By element: Atomic # 1 Polarization: 55.50 SS G_CDS: -1.16 Total: 54.34 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: 6.23 Total: 8.61 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -6.28 Total: -122.38 kcal Atomic # 8 Polarization: -53.95 SS G_CDS: -0.10 Total: -54.05 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -69.18 0.73 -68.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754986082.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.392 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds