Wall clock time and date at job start Sat Apr 11 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 C 1.52997 * 109.47132 * 239.99992 * 2 1 3 5 5 C 1.52999 * 109.47196 * 120.00121 * 2 1 3 6 6 H 1.09003 * 108.85110 * 305.58204 * 5 2 1 7 7 C 1.50473 * 108.88040 * 64.13799 * 5 2 1 8 8 C 1.54235 * 108.52814 * 214.93108 * 7 5 2 9 9 C 1.45548 * 112.40512 * 280.01480 * 8 7 5 10 10 C 1.54242 * 112.40783 * 61.93101 * 9 8 7 11 11 H 1.09006 * 109.62743 * 39.91758 * 10 9 8 12 12 N 1.46500 * 109.63006 * 160.30437 * 10 9 8 13 13 C 1.34777 * 120.00013 * 275.00232 * 12 10 9 14 14 O 1.21589 * 119.99977 * 359.97438 * 13 12 10 15 15 N 1.34771 * 120.00153 * 179.97438 * 13 12 10 16 16 C 1.46502 * 120.00226 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47164 * 180.02562 * 16 15 13 18 18 O 1.21290 * 119.99928 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00188 * 179.97438 * 17 16 15 20 20 C 1.37100 * 120.00592 * 179.72286 * 19 17 16 21 21 H 1.08001 * 119.99291 * 0.28121 * 20 19 17 22 22 C 1.38950 * 120.00634 * 180.27643 * 20 19 17 23 23 N 1.31414 * 119.99772 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00209 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47066 * 0.02562 * 24 22 20 26 26 H 1.48495 * 109.47096 * 120.00143 * 24 22 20 27 27 H 1.48497 * 109.47111 * 240.00043 * 24 22 20 28 28 C 1.50476 * 108.51929 * 280.01727 * 10 9 8 29 29 C 1.54065 * 108.87697 * 187.11716 * 5 2 1 30 30 H 1.09004 * 109.47297 * 293.61023 * 1 2 3 31 31 H 1.08996 * 109.47306 * 53.61617 * 1 2 3 32 32 H 1.08999 * 109.47100 * 173.61299 * 1 2 3 33 33 H 1.09001 * 109.47183 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.47041 * 300.00039 * 3 2 1 35 35 H 1.08998 * 109.46780 * 60.00264 * 3 2 1 36 36 H 1.09005 * 109.47327 * 299.99821 * 4 2 1 37 37 H 1.09001 * 109.47119 * 59.99885 * 4 2 1 38 38 H 1.09001 * 109.47292 * 179.97438 * 4 2 1 39 39 H 1.09001 * 109.62545 * 95.21695 * 7 5 2 40 40 H 1.09003 * 109.62718 * 334.64160 * 7 5 2 41 41 H 1.08999 * 108.89995 * 159.26260 * 8 7 5 42 42 H 1.09002 * 108.82053 * 40.70994 * 8 7 5 43 43 H 1.08999 * 108.89086 * 301.18314 * 9 8 7 44 44 H 1.08993 * 108.81982 * 182.63631 * 9 8 7 45 45 H 0.96994 * 119.99922 * 95.00429 * 12 10 9 46 46 H 0.97004 * 119.99597 * 0.02562 * 15 13 12 47 47 H 1.08991 * 109.46912 * 60.00009 * 16 15 13 48 48 H 1.09001 * 109.46728 * 299.99973 * 16 15 13 49 49 H 0.97007 * 120.00273 * 0.02562 * 19 17 16 50 50 H 0.96996 * 119.99984 * 179.97438 * 23 22 20 51 51 H 1.09011 * 108.87177 * 214.92742 * 28 10 9 52 52 H 1.08995 * 108.87889 * 333.37016 * 28 10 9 53 53 H 1.08999 * 108.81384 * 318.36050 * 29 5 2 54 54 H 1.09000 * 108.81746 * 76.64441 * 29 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7213 1.2492 6 1 1.5915 -0.2608 2.1295 7 6 1.6168 -2.1639 1.1855 8 6 1.3063 -2.6472 2.6168 9 6 2.5101 -2.9858 3.3614 10 6 3.4470 -1.7746 3.5468 11 1 2.8558 -0.8833 3.7576 12 7 4.3667 -2.0293 4.6583 13 6 3.9856 -1.7619 5.9231 14 8 2.8787 -1.3088 6.1416 15 7 4.8315 -1.9967 6.9457 16 6 4.4171 -1.7066 8.3206 17 6 5.5370 -2.0548 9.2669 18 8 6.5787 -2.5018 8.8353 19 7 5.3812 -1.8695 10.5927 20 6 6.3979 -2.1916 11.4542 21 1 7.3254 -2.5896 11.0699 22 6 6.2351 -2.0060 12.8215 23 7 5.1063 -1.5221 13.2891 24 14 7.6207 -2.4442 13.9951 25 1 8.7772 -2.9654 13.2230 26 1 8.0341 -1.2325 14.7474 27 1 7.1526 -3.4826 14.9479 28 6 4.2304 -1.5776 2.2773 29 6 3.5700 -0.5587 1.3289 30 1 -0.3634 0.4116 0.9417 31 1 -0.3634 0.6096 -0.8273 32 1 -0.3633 -1.0213 -0.1143 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 -1.7490 -1.2492 37 1 1.6766 -0.2074 -2.1392 38 1 3.1300 -0.7209 -1.2495 39 1 2.4231 -2.7636 0.7632 40 1 0.7247 -2.2567 0.5660 41 1 0.6664 -3.5279 2.5610 42 1 0.7738 -1.8575 3.1469 43 1 3.0474 -3.7689 2.8265 44 1 2.2222 -3.3628 4.3427 45 1 5.2499 -2.3903 4.4839 46 1 5.7148 -2.3578 6.7713 47 1 3.5356 -2.2984 8.5669 48 1 4.1805 -0.6465 8.4127 49 1 4.5479 -1.5123 10.9379 50 1 4.9925 -1.3929 14.2437 51 1 5.2307 -1.2263 2.5311 52 1 4.3150 -2.5348 1.7629 53 1 3.9893 -0.6846 0.3307 54 1 3.7988 0.4476 1.6796 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358309807.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:36 Heat of formation + Delta-G solvation = -120.376208 kcal Electronic energy + Delta-G solvation = -30129.385472 eV Core-core repulsion = 26098.921971 eV Total energy + Delta-G solvation = -4030.463501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.54676 -40.66264 -39.92709 -37.66682 -36.22156 -35.25116 -34.80963 -33.37771 -33.02038 -30.91502 -29.02990 -28.29281 -28.07576 -26.44847 -25.35734 -25.00694 -22.00433 -21.53166 -21.37003 -21.29134 -20.11481 -19.49080 -18.92756 -17.54857 -17.35885 -16.84255 -16.65178 -16.44465 -16.00822 -15.86741 -15.73232 -15.55208 -15.23734 -15.10234 -14.96310 -14.62671 -14.48514 -14.05043 -13.94771 -13.65370 -13.55126 -13.42954 -13.06653 -12.91942 -12.80792 -12.70087 -12.57566 -12.44648 -12.42121 -12.11175 -12.03521 -11.94707 -11.91200 -11.59500 -11.58008 -11.41592 -11.32137 -10.92898 -10.89178 -10.78071 -10.55818 -10.36007 -10.10159 -9.77100 -8.51213 -6.01510 1.35149 1.42605 1.55927 1.65050 1.89504 2.14603 2.28813 3.05125 3.15977 3.34426 3.63401 3.71560 3.83300 4.02502 4.05711 4.20511 4.25660 4.34489 4.35660 4.42061 4.43779 4.45903 4.47523 4.57945 4.63175 4.80790 4.82284 4.86133 4.92025 4.99747 5.04381 5.06825 5.09808 5.13851 5.19743 5.25011 5.29316 5.30976 5.33272 5.39057 5.39308 5.43486 5.44427 5.52355 5.54103 5.65872 5.70136 5.75483 5.91965 6.01359 6.47847 7.03337 7.07159 7.43010 7.57435 7.94124 8.65994 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.031100 B = 0.001720 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.104826 B =16274.694691 C =16346.701209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.142 4.142 5 C -0.075 4.075 6 H 0.049 0.951 7 C -0.107 4.107 8 C -0.114 4.114 9 C -0.121 4.121 10 C 0.168 3.832 11 H 0.064 0.936 12 N -0.729 5.729 13 C 0.703 3.297 14 O -0.632 6.632 15 N -0.725 5.725 16 C 0.142 3.858 17 C 0.434 3.566 18 O -0.623 6.623 19 N -0.560 5.560 20 C -0.337 4.337 21 H 0.087 0.913 22 C -0.012 4.012 23 N -0.916 5.916 24 Si 0.998 3.002 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.271 1.271 28 C -0.122 4.122 29 C -0.106 4.106 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.061 0.939 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.033 0.967 45 H 0.409 0.591 46 H 0.410 0.590 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.399 0.601 50 H 0.280 0.720 51 H 0.074 0.926 52 H 0.084 0.916 53 H 0.084 0.916 54 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 0.922 -29.633 30.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.202 4.202 4 C -0.199 4.199 5 C -0.094 4.094 6 H 0.067 0.933 7 C -0.144 4.144 8 C -0.152 4.152 9 C -0.159 4.159 10 C 0.063 3.937 11 H 0.083 0.917 12 N -0.384 5.384 13 C 0.403 3.597 14 O -0.513 6.513 15 N -0.383 5.383 16 C 0.014 3.986 17 C 0.221 3.779 18 O -0.511 6.511 19 N -0.195 5.195 20 C -0.466 4.466 21 H 0.105 0.895 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.822 3.178 25 H -0.194 1.194 26 H -0.196 1.196 27 H -0.196 1.196 28 C -0.160 4.160 29 C -0.144 4.144 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.095 0.905 44 H 0.052 0.948 45 H 0.245 0.755 46 H 0.247 0.753 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.233 0.767 50 H 0.089 0.911 51 H 0.092 0.908 52 H 0.103 0.897 53 H 0.102 0.898 54 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.445 1.094 -29.505 30.449 hybrid contribution 0.685 -0.133 1.305 1.480 sum -6.760 0.962 -28.199 29.014 Atomic orbital electron populations 1.21942 0.94838 1.02004 1.01287 1.20609 0.95323 0.95224 0.95278 1.21943 1.01411 0.95583 1.01246 1.21941 1.01356 1.00420 0.96151 1.20997 0.95313 0.96006 0.97050 0.93300 1.21497 1.02115 0.95473 0.95330 1.20395 0.97062 1.01195 0.96517 1.20832 0.97358 0.98065 0.99689 1.20599 0.90355 0.97782 0.84950 0.91735 1.45207 1.19779 1.69795 1.03651 1.16005 0.83606 0.78664 0.81436 1.90875 1.22234 1.53576 1.84646 1.44706 1.19233 1.69853 1.04511 1.20553 0.95289 1.02287 0.80498 1.20402 0.89624 0.84249 0.83591 1.90463 1.31087 1.52312 1.77285 1.41846 1.16878 1.55966 1.04829 1.19785 0.96612 1.42108 0.88094 0.89525 1.26150 1.00243 0.96134 0.98706 1.69691 1.25924 1.44278 1.15762 0.84790 0.77423 0.78226 0.77401 1.19403 1.19645 1.19636 1.21631 0.99077 1.01584 0.93682 1.21982 0.94558 0.98146 0.99673 0.93725 0.92449 0.91920 0.92043 0.92520 0.93792 0.91962 0.92783 0.91998 0.90516 0.90513 0.91676 0.93788 0.90481 0.94771 0.75522 0.75261 0.89279 0.89250 0.76727 0.91078 0.90783 0.89697 0.89766 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.14 71.98 0.59 -1.10 16 2 C -0.06 -0.72 0.54 -52.18 -0.03 -0.75 16 3 C -0.14 -1.73 7.97 71.98 0.57 -1.16 16 4 C -0.14 -1.26 7.96 71.98 0.57 -0.68 16 5 C -0.08 -0.99 1.07 -11.25 -0.01 -1.01 16 6 H 0.05 0.88 6.61 -2.39 -0.02 0.87 16 7 C -0.11 -1.30 3.75 30.20 0.11 -1.19 16 8 C -0.11 -1.93 5.27 28.74 0.15 -1.78 16 9 C -0.12 -2.36 4.89 28.74 0.14 -2.22 16 10 C 0.17 3.43 2.11 44.60 0.09 3.52 16 11 H 0.06 1.69 6.45 -2.38 -0.02 1.67 16 12 N -0.73 -17.11 5.00 -459.71 -2.30 -19.41 16 13 C 0.70 23.01 8.44 179.06 1.51 24.52 16 14 O -0.63 -25.21 16.02 -4.00 -0.06 -25.27 16 15 N -0.73 -24.57 5.53 -482.31 -2.67 -27.24 16 16 C 0.14 5.40 6.15 85.63 0.53 5.92 16 17 C 0.43 20.33 7.85 87.66 0.69 21.02 16 18 O -0.62 -32.39 15.24 -3.06 -0.05 -32.44 16 19 N -0.56 -28.45 5.29 -306.99 -1.62 -30.07 16 20 C -0.34 -18.68 9.68 84.04 0.81 -17.86 16 21 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 22 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 23 N -0.92 -49.04 13.05 21.66 0.28 -48.75 16 24 Si 1.00 41.94 29.55 68.60 2.03 43.97 16 25 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 28 C -0.12 -1.63 4.93 30.14 0.15 -1.49 16 29 C -0.11 -1.30 4.02 31.32 0.13 -1.18 16 30 H 0.04 0.61 8.13 -2.39 -0.02 0.60 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.06 0.67 6.39 -2.39 -0.02 0.65 16 33 H 0.06 0.69 6.64 -2.39 -0.02 0.67 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.04 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.06 0.51 6.76 -2.38 -0.02 0.49 16 37 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.06 0.50 6.29 -2.39 -0.02 0.49 16 39 H 0.08 0.79 6.98 -2.39 -0.02 0.77 16 40 H 0.08 0.84 5.26 -2.39 -0.01 0.82 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.04 0.92 7.46 -2.39 -0.02 0.90 16 43 H 0.08 1.21 7.47 -2.39 -0.02 1.20 16 44 H 0.03 0.88 8.01 -2.39 -0.02 0.86 16 45 H 0.41 7.38 8.51 -92.71 -0.79 6.60 16 46 H 0.41 13.38 7.45 -92.71 -0.69 12.68 16 47 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 48 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 49 H 0.40 19.53 7.90 -92.70 -0.73 18.80 16 50 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 51 H 0.07 0.95 7.85 -2.38 -0.02 0.93 16 52 H 0.08 0.89 6.63 -2.39 -0.02 0.87 16 53 H 0.08 0.79 5.98 -2.39 -0.01 0.78 16 54 H 0.05 0.77 7.32 -2.39 -0.02 0.75 16 Total: -1.00 -67.36 405.83 0.80 -66.56 By element: Atomic # 1 Polarization: 49.52 SS G_CDS: -1.28 Total: 48.24 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 6.47 Total: 24.42 kcal Atomic # 7 Polarization: -119.16 SS G_CDS: -6.31 Total: -125.47 kcal Atomic # 8 Polarization: -57.60 SS G_CDS: -0.11 Total: -57.71 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -67.36 0.80 -66.56 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358309807.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.817 kcal (2) G-P(sol) polarization free energy of solvation -67.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds