Wall clock time and date at job start Sat Apr 11 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46793 * 2 1 4 4 C 1.52993 * 109.47295 * 239.99748 * 2 1 3 5 5 C 1.50704 * 109.47100 * 185.00072 * 4 2 1 6 6 O 1.21282 * 120.00032 * 0.02562 * 5 4 2 7 7 N 1.34777 * 120.00150 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00239 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47351 * 180.02562 * 8 7 5 10 10 C 1.50697 * 109.47014 * 180.02562 * 9 8 7 11 11 O 1.21282 * 120.00280 * 0.02562 * 10 9 8 12 12 N 1.34777 * 119.99902 * 179.97438 * 10 9 8 13 13 C 1.46504 * 120.00214 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.46922 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.49748 * 304.92588 * 14 13 12 16 16 C 1.53048 * 109.49135 * 184.83559 * 14 13 12 17 17 C 1.53047 * 109.53510 * 178.67737 * 16 14 13 18 18 C 1.53193 * 109.30863 * 61.36763 * 17 16 14 19 19 N 1.46932 * 108.77612 * 305.36266 * 18 17 16 20 20 C 1.36937 * 120.62923 * 233.62880 * 19 18 17 21 21 H 1.08001 * 119.99729 * 151.80428 * 20 19 18 22 22 C 1.38814 * 120.00409 * 331.81277 * 20 19 18 23 23 N 1.31617 * 119.99657 * 343.08689 * 22 20 19 24 24 Si 1.86794 * 120.00059 * 163.08165 * 22 20 19 25 25 H 1.48498 * 109.47256 * 90.00088 * 24 22 20 26 26 H 1.48504 * 109.47080 * 210.00234 * 24 22 20 27 27 H 1.48499 * 109.47308 * 329.99935 * 24 22 20 28 28 C 1.46922 * 118.73735 * 53.61199 * 19 18 17 29 29 H 1.09009 * 109.46927 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47334 * 300.00087 * 1 2 3 31 31 H 1.09002 * 109.46919 * 60.00719 * 1 2 3 32 32 H 1.09002 * 109.46919 * 119.99281 * 2 1 3 33 33 H 1.09002 * 109.46801 * 299.99354 * 3 2 1 34 34 H 1.08991 * 109.47827 * 59.99834 * 3 2 1 35 35 H 1.09002 * 109.46928 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.47416 * 304.99516 * 4 2 1 37 37 H 1.08997 * 109.47522 * 64.99576 * 4 2 1 38 38 H 0.97000 * 119.99691 * 359.97438 * 7 5 4 39 39 H 1.09000 * 109.47450 * 300.00794 * 8 7 5 40 40 H 1.08999 * 109.47364 * 60.00277 * 8 7 5 41 41 H 1.08999 * 109.47025 * 300.00196 * 9 8 7 42 42 H 1.09002 * 109.46754 * 60.00259 * 9 8 7 43 43 H 0.97000 * 119.99691 * 0.02562 * 12 10 9 44 44 H 1.09012 * 109.46639 * 300.00164 * 13 12 10 45 45 H 1.08997 * 109.47315 * 59.99629 * 13 12 10 46 46 H 1.08996 * 109.46415 * 298.69956 * 16 14 13 47 47 H 1.08996 * 109.46073 * 58.66280 * 16 14 13 48 48 H 1.08995 * 109.49952 * 301.41763 * 17 16 14 49 49 H 1.09003 * 109.49766 * 181.31396 * 17 16 14 50 50 H 1.09004 * 109.58711 * 185.57890 * 18 17 16 51 51 H 1.08996 * 109.70695 * 65.22330 * 18 17 16 52 52 H 0.97007 * 119.99824 * 180.02562 * 23 22 20 53 53 H 1.09001 * 109.58338 * 186.60228 * 28 19 18 54 54 H 1.08995 * 109.58791 * 66.17510 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.8294 -1.1887 6 8 4.1450 -0.3748 -0.2397 7 7 4.2150 -1.4322 -2.1888 8 6 5.6750 -1.5369 -2.1303 9 6 6.1851 -2.2583 -3.3795 10 6 7.6870 -2.3664 -3.3190 11 8 8.2900 -1.9117 -2.3700 12 7 8.3600 -2.9693 -4.3190 13 6 9.8200 -3.0750 -4.2600 14 6 10.3300 -3.7963 -5.5092 15 1 9.8292 -4.7599 -5.6028 16 6 11.8404 -4.0141 -5.3923 17 6 12.3462 -4.7648 -6.6263 18 6 12.0744 -3.9238 -7.8776 19 7 10.6448 -3.5873 -7.9199 20 6 9.8945 -3.8680 -9.0305 21 1 8.8355 -4.0565 -8.9333 22 6 10.4951 -3.9105 -10.2813 23 7 11.6809 -3.3684 -10.4606 24 14 9.6203 -4.7372 -11.7098 25 1 8.7817 -3.7393 -12.4211 26 1 10.6255 -5.2980 -12.6481 27 1 8.7583 -5.8318 -11.1958 28 6 10.0354 -2.9443 -6.7477 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8901 32 1 1.8933 -0.5137 0.8901 33 1 1.6766 1.9562 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 3.1299 1.4425 -0.0005 36 1 1.6055 -1.7199 -1.2950 37 1 1.7517 -0.1585 -2.1369 38 1 3.7326 -1.7968 -2.9472 39 1 6.1094 -0.5382 -2.0851 40 1 5.9638 -2.0991 -1.2423 41 1 5.7508 -3.2570 -3.4251 42 1 5.8964 -1.6956 -4.2673 43 1 7.8776 -3.3333 -5.0778 44 1 10.2550 -2.0765 -4.2143 45 1 10.1080 -3.6377 -3.3720 46 1 12.3422 -3.0491 -5.3233 47 1 12.0547 -4.5994 -4.4981 48 1 11.8268 -5.7194 -6.7098 49 1 13.4179 -4.9402 -6.5316 50 1 12.3418 -4.4947 -8.7668 51 1 12.6644 -3.0080 -7.8402 52 1 12.1005 -3.3978 -11.3348 53 1 8.9575 -2.8690 -6.8915 54 1 10.4590 -1.9488 -6.6156 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359371795.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:49 Heat of formation + Delta-G solvation = -110.859502 kcal Electronic energy + Delta-G solvation = -29108.580251 eV Core-core repulsion = 25078.529426 eV Total energy + Delta-G solvation = -4030.050825 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.10988 -40.63852 -39.35155 -36.89534 -36.26861 -35.88898 -34.66126 -32.59206 -32.27694 -31.56068 -29.06179 -27.93550 -27.26007 -26.86104 -24.54250 -23.77952 -22.44673 -22.01461 -21.48171 -20.79048 -20.45517 -18.69401 -18.23469 -17.92706 -17.17449 -16.88384 -16.74097 -16.68556 -16.35753 -15.98078 -15.61235 -15.45613 -15.08090 -14.83930 -14.79725 -14.51769 -14.41695 -14.39837 -13.98937 -13.72222 -13.55511 -13.24773 -13.02497 -12.99901 -12.93572 -12.83622 -12.72934 -12.47543 -12.43822 -12.25575 -12.03885 -11.96969 -11.81346 -11.73077 -11.57226 -11.55697 -11.35264 -11.09774 -10.96404 -10.69208 -10.51505 -10.12566 -10.02583 -8.65890 -7.85070 -5.30947 1.48288 1.50565 1.59415 1.64314 1.69278 1.94900 2.52708 2.53806 3.30369 3.60560 3.63791 3.82007 3.95185 4.00020 4.00756 4.02284 4.05393 4.09973 4.11172 4.40324 4.41390 4.52820 4.59280 4.64227 4.72378 4.74563 4.75896 4.78087 4.85579 4.87202 4.89887 4.92968 4.95045 5.02022 5.06795 5.11518 5.13884 5.24725 5.33029 5.34409 5.38220 5.40334 5.50524 5.51501 5.55333 5.58905 5.68416 5.79367 6.40654 6.55004 6.62123 7.16522 7.25178 7.33779 7.88184 8.40696 9.21377 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015604 B = 0.001727 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.985002 B =16205.418502 C =17615.774815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.084 4.084 3 C -0.153 4.153 4 C -0.129 4.129 5 C 0.502 3.498 6 O -0.585 6.585 7 N -0.718 5.718 8 C 0.140 3.860 9 C -0.139 4.139 10 C 0.511 3.489 11 O -0.591 6.591 12 N -0.716 5.716 13 C 0.136 3.864 14 C -0.099 4.099 15 H 0.080 0.920 16 C -0.099 4.099 17 C -0.130 4.130 18 C 0.173 3.827 19 N -0.609 5.609 20 C -0.260 4.260 21 H 0.074 0.926 22 C -0.054 4.054 23 N -0.938 5.938 24 Si 0.966 3.034 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.266 1.266 28 C 0.152 3.848 29 H 0.066 0.934 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.420 0.580 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.415 0.585 44 H 0.052 0.948 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.078 0.922 48 H 0.055 0.945 49 H 0.067 0.933 50 H 0.051 0.949 51 H -0.010 1.010 52 H 0.248 0.752 53 H 0.062 0.938 54 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.842 0.269 15.789 26.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.103 4.103 3 C -0.211 4.211 4 C -0.168 4.168 5 C 0.291 3.709 6 O -0.465 6.465 7 N -0.372 5.372 8 C 0.016 3.984 9 C -0.179 4.179 10 C 0.299 3.701 11 O -0.471 6.471 12 N -0.368 5.368 13 C 0.012 3.988 14 C -0.119 4.119 15 H 0.098 0.902 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.047 3.953 19 N -0.332 5.332 20 C -0.390 4.390 21 H 0.092 0.908 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.224 1.224 27 H -0.191 1.191 28 C 0.027 3.973 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.139 0.861 37 H 0.136 0.864 38 H 0.258 0.742 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.252 0.748 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.069 0.931 51 H 0.008 0.992 52 H 0.057 0.943 53 H 0.081 0.919 54 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -19.898 0.910 16.956 26.158 hybrid contribution 0.158 -0.283 -1.670 1.701 sum -19.740 0.628 15.286 24.975 Atomic orbital electron populations 1.21816 0.93011 1.02634 1.02483 1.20869 0.96532 0.95922 0.97011 1.21936 1.01172 0.96258 1.01701 1.21830 0.88783 1.04847 1.01360 1.21493 0.91751 0.76296 0.81380 1.90693 1.71701 1.48959 1.35126 1.45888 1.06899 1.59913 1.24516 1.20747 0.80226 0.99978 0.97497 1.21765 0.90244 1.05615 1.00243 1.20985 0.91006 0.76652 0.81491 1.90728 1.71671 1.49621 1.35121 1.46000 1.07832 1.59092 1.23843 1.21234 0.79915 1.00085 0.97574 1.21710 0.97041 0.99640 0.93557 0.90192 1.21348 0.94323 1.00226 0.97790 1.21996 1.00213 0.98915 0.95754 1.20618 0.83951 0.94847 0.95885 1.44306 1.06565 1.68987 1.13340 1.19560 0.93457 1.40530 0.85427 0.90796 1.25833 0.98292 1.00913 0.99896 1.70206 1.18375 1.47130 1.22690 0.85294 0.77467 0.78612 0.79161 1.21232 1.22448 1.19079 1.21033 0.96933 0.92789 0.86564 0.91505 0.92654 0.91496 0.92623 0.92079 0.92942 0.93753 0.86109 0.86422 0.74170 0.93506 0.93100 0.84698 0.85253 0.74803 0.92935 0.91264 0.92936 0.90317 0.92648 0.91472 0.93092 0.99174 0.94306 0.91935 0.97943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.19 71.98 0.66 -0.46 16 2 C -0.08 -1.09 2.57 -10.80 -0.03 -1.12 16 3 C -0.15 -2.47 8.93 71.98 0.64 -1.82 16 4 C -0.13 -1.19 5.17 29.85 0.15 -1.04 16 5 C 0.50 8.89 7.55 87.66 0.66 9.55 16 6 O -0.58 -16.60 13.97 -3.04 -0.04 -16.64 16 7 N -0.72 -9.25 5.56 -463.07 -2.57 -11.82 16 8 C 0.14 2.65 4.96 86.38 0.43 3.08 16 9 C -0.14 -1.78 5.81 29.85 0.17 -1.61 16 10 C 0.51 11.66 7.83 87.66 0.69 12.34 16 11 O -0.59 -19.35 15.98 -3.04 -0.05 -19.39 16 12 N -0.72 -15.31 5.33 -463.04 -2.47 -17.77 16 13 C 0.14 3.51 5.07 86.38 0.44 3.95 16 14 C -0.10 -2.88 2.38 -10.71 -0.03 -2.91 16 15 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 16 C -0.10 -2.95 5.17 30.63 0.16 -2.79 16 17 C -0.13 -4.60 6.08 30.67 0.19 -4.41 16 18 C 0.17 8.13 5.30 86.36 0.46 8.59 16 19 N -0.61 -28.94 2.99 -699.10 -2.09 -31.03 16 20 C -0.26 -13.48 9.58 84.03 0.81 -12.68 16 21 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 22 C -0.05 -2.93 4.92 84.86 0.42 -2.52 16 23 N -0.94 -54.71 11.20 21.65 0.24 -54.47 16 24 Si 0.97 43.11 29.59 68.60 2.03 45.14 16 25 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 26 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 C 0.15 5.70 5.60 86.36 0.48 6.19 16 29 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.96 7.95 -2.39 -0.02 0.94 16 33 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.04 1.00 5.95 -2.39 -0.01 0.99 16 36 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.42 1.86 8.47 -92.71 -0.79 1.07 16 39 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 40 H 0.05 1.22 8.10 -2.39 -0.02 1.20 16 41 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.41 7.06 7.70 -92.71 -0.71 6.35 16 44 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 46 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 48 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 50 H 0.05 2.74 6.06 -2.38 -0.01 2.73 16 51 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 52 H 0.25 14.09 8.31 -92.70 -0.77 13.31 16 53 H 0.06 2.14 7.13 -2.39 -0.02 2.12 16 54 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 Total: -1.00 -77.78 424.27 0.73 -77.05 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -0.63 Total: 16.59 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 6.30 Total: 12.35 kcal Atomic # 7 Polarization: -108.20 SS G_CDS: -6.89 Total: -115.09 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -0.09 Total: -36.04 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -77.78 0.73 -77.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359371795.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.805 kcal (2) G-P(sol) polarization free energy of solvation -77.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds