Wall clock time and date at job start Sat Apr 11 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47477 * 2 1 4 4 C 1.53000 * 109.47435 * 120.00503 * 2 1 3 5 5 C 1.50697 * 109.46949 * 64.99292 * 4 2 1 6 6 O 1.21278 * 120.00483 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99721 * 180.02562 * 5 4 2 8 8 C 1.46506 * 120.00150 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47377 * 179.97438 * 8 7 5 10 10 C 1.50695 * 109.47141 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00244 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99913 * 180.02562 * 10 9 8 13 13 C 1.46506 * 120.00150 * 179.97438 * 12 10 9 14 14 C 1.52989 * 109.47243 * 180.02562 * 13 12 10 15 15 C 1.53349 * 109.42090 * 295.12458 * 14 13 12 16 16 C 1.53189 * 109.15350 * 178.67324 * 15 14 13 17 17 N 1.46931 * 108.89061 * 54.57922 * 16 15 14 18 18 C 1.36938 * 120.62972 * 126.29441 * 17 16 15 19 19 H 1.08005 * 120.00173 * 331.83979 * 18 17 16 20 20 C 1.38813 * 119.99936 * 151.83343 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08512 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08402 * 20 18 17 23 23 H 1.48500 * 109.46925 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46793 * 120.00276 * 22 20 18 25 25 H 1.48498 * 109.46814 * 240.00176 * 22 20 18 26 26 C 1.46927 * 118.74004 * 306.32424 * 17 16 15 27 27 C 1.53047 * 109.46104 * 175.00010 * 14 13 12 28 28 H 1.08997 * 109.47198 * 59.99292 * 1 2 3 29 29 H 1.08994 * 109.47504 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46752 * 299.99849 * 1 2 3 31 31 H 1.09001 * 109.46752 * 240.00151 * 2 1 3 32 32 H 1.09000 * 109.47273 * 180.02562 * 3 2 1 33 33 H 1.09007 * 109.46961 * 300.00660 * 3 2 1 34 34 H 1.09005 * 109.46807 * 59.99824 * 3 2 1 35 35 H 1.09004 * 109.46709 * 304.99858 * 4 2 1 36 36 H 1.08999 * 109.46888 * 184.99595 * 4 2 1 37 37 H 0.96995 * 120.00069 * 0.02562 * 7 5 4 38 38 H 1.09004 * 109.46977 * 60.00187 * 8 7 5 39 39 H 1.08998 * 109.46870 * 300.00356 * 8 7 5 40 40 H 1.09004 * 109.46709 * 60.00274 * 9 8 7 41 41 H 1.09000 * 109.47191 * 300.00465 * 9 8 7 42 42 H 0.97003 * 120.00078 * 0.02562 * 12 10 9 43 43 H 1.09000 * 109.46657 * 59.99515 * 13 12 10 44 44 H 1.09008 * 109.46786 * 300.00364 * 13 12 10 45 45 H 1.08997 * 109.46256 * 55.02918 * 14 13 12 46 46 H 1.09001 * 109.68292 * 58.70967 * 15 14 13 47 47 H 1.08994 * 109.47524 * 298.51791 * 15 14 13 48 48 H 1.09000 * 109.58714 * 294.72587 * 16 15 14 49 49 H 1.09003 * 109.58688 * 174.43867 * 16 15 14 50 50 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 51 51 H 1.09002 * 109.58255 * 173.39566 * 26 17 16 52 52 H 1.09000 * 109.58150 * 293.67300 * 26 17 16 53 53 H 1.09000 * 109.49464 * 61.43304 * 27 14 13 54 54 H 1.08999 * 109.52117 * 301.35057 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1887 6 8 1.0115 -2.5903 0.2398 7 7 1.9844 -3.0085 2.1893 8 6 1.5972 -4.4203 2.1304 9 6 2.1072 -5.1416 3.3796 10 6 1.7095 -6.5938 3.3186 11 8 1.0797 -7.0108 2.3697 12 7 2.0528 -7.4291 4.3191 13 6 1.6656 -8.8408 4.2602 14 6 2.1746 -9.5618 5.5098 15 6 3.7081 -9.5580 5.5117 16 6 4.2108 -10.2520 6.7815 17 7 3.6090 -11.5899 6.8625 18 6 4.3956 -12.7008 7.0127 19 1 5.4070 -12.7016 6.6338 20 6 3.8930 -13.8258 7.6519 21 7 2.8125 -13.7314 8.3976 22 14 4.7501 -15.4737 7.4538 23 1 5.9338 -15.3131 6.5716 24 1 5.1881 -15.9669 8.7842 25 1 3.8100 -16.4510 6.8486 26 6 2.1474 -11.7134 6.7787 27 6 1.6647 -11.0049 5.5092 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6054 -0.2618 2.1369 36 1 3.1264 -0.6444 1.2949 37 1 2.4877 -2.6750 2.9484 38 1 2.0326 -4.8797 1.2429 39 1 0.5110 -4.4974 2.0837 40 1 1.6722 -4.6823 4.2673 41 1 3.1935 -5.0644 3.4257 42 1 2.5555 -7.0954 5.0786 43 1 2.1008 -9.3001 3.3726 44 1 0.5793 -8.9180 4.2136 45 1 1.8097 -9.0482 6.3993 46 1 4.0727 -8.5310 5.4897 47 1 4.0738 -10.0932 4.6355 48 1 3.9224 -9.6681 7.6556 49 1 5.2965 -10.3413 6.7437 50 1 2.4611 -14.5176 8.8439 51 1 1.8715 -12.7671 6.7365 52 1 1.6909 -11.2509 7.6539 53 1 2.0496 -11.5263 4.6328 54 1 0.5750 -11.0061 5.4839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362532095.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:00 Heat of formation + Delta-G solvation = -111.115845 kcal Electronic energy + Delta-G solvation = -28853.346207 eV Core-core repulsion = 24823.284266 eV Total energy + Delta-G solvation = -4030.061941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11314 -40.64273 -39.33953 -36.90318 -36.39616 -35.90109 -34.48405 -32.74707 -32.05478 -31.35798 -29.22533 -28.23007 -27.93346 -25.96535 -24.51800 -23.74713 -22.55896 -22.01520 -21.46348 -20.78583 -20.53977 -18.73321 -18.26004 -17.91376 -17.15158 -16.98565 -16.71611 -16.64772 -16.33264 -15.75590 -15.64987 -15.30525 -15.24142 -14.87650 -14.82120 -14.69064 -14.44617 -14.30509 -14.00240 -13.79845 -13.42713 -13.24360 -13.02720 -13.00946 -12.91481 -12.80406 -12.71482 -12.58733 -12.42368 -12.23735 -12.03629 -11.99217 -11.83835 -11.72867 -11.61165 -11.55432 -11.27850 -11.09237 -10.97284 -10.69674 -10.53367 -10.12576 -10.02995 -8.66026 -7.87347 -5.31995 1.44850 1.47608 1.57251 1.64835 1.69892 1.94143 2.51102 2.53339 3.27536 3.62906 3.72561 3.82260 3.85253 3.94132 3.97029 4.03259 4.05797 4.10444 4.12499 4.40728 4.52663 4.54494 4.55541 4.71030 4.72778 4.74441 4.75118 4.76050 4.84376 4.86647 4.87687 4.94552 4.95922 5.03958 5.06987 5.14240 5.15766 5.30006 5.31587 5.33577 5.38674 5.40777 5.48287 5.51700 5.55666 5.56759 5.66797 5.80059 6.40481 6.56514 6.63295 7.16427 7.27521 7.35043 7.89249 8.39255 9.18796 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.041090 B = 0.001408 C = 0.001391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.266613 B =19888.105091 C =20131.546433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.085 4.085 3 C -0.142 4.142 4 C -0.128 4.128 5 C 0.502 3.498 6 O -0.586 6.586 7 N -0.717 5.717 8 C 0.139 3.861 9 C -0.136 4.136 10 C 0.509 3.491 11 O -0.594 6.594 12 N -0.712 5.712 13 C 0.135 3.865 14 C -0.077 4.077 15 C -0.114 4.114 16 C 0.138 3.862 17 N -0.612 5.612 18 C -0.262 4.262 19 H 0.065 0.935 20 C -0.050 4.050 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.291 1.291 25 H -0.292 1.292 26 C 0.178 3.822 27 C -0.124 4.124 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.421 0.579 38 H 0.046 0.954 39 H 0.047 0.953 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.418 0.582 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.080 0.920 46 H 0.091 0.909 47 H 0.047 0.953 48 H 0.021 0.979 49 H 0.051 0.949 50 H 0.249 0.751 51 H 0.048 0.952 52 H 0.000 1.000 53 H 0.047 0.953 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.672 31.309 -9.054 32.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 C -0.200 4.200 4 C -0.168 4.168 5 C 0.290 3.710 6 O -0.466 6.466 7 N -0.371 5.371 8 C 0.014 3.986 9 C -0.176 4.176 10 C 0.297 3.703 11 O -0.474 6.474 12 N -0.364 5.364 13 C 0.011 3.989 14 C -0.096 4.096 15 C -0.152 4.152 16 C 0.013 3.987 17 N -0.336 5.336 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.192 1.192 24 H -0.218 1.218 25 H -0.219 1.219 26 C 0.052 3.948 27 C -0.164 4.164 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.259 0.741 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.098 0.902 46 H 0.109 0.891 47 H 0.066 0.934 48 H 0.038 0.962 49 H 0.069 0.931 50 H 0.058 0.942 51 H 0.067 0.933 52 H 0.018 0.982 53 H 0.066 0.934 54 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.255 30.589 -10.283 32.273 hybrid contribution 0.393 -1.529 0.661 1.711 sum 0.138 29.061 -9.622 30.612 Atomic orbital electron populations 1.21935 0.95853 1.01548 1.01719 1.20868 0.95777 0.96679 0.97039 1.21817 1.01522 0.94126 1.02493 1.21827 1.04625 0.88976 1.01343 1.21500 0.78203 0.89871 0.81394 1.90699 1.41642 1.79056 1.35186 1.45863 1.58070 1.08742 1.24432 1.20759 0.99372 0.80891 0.97609 1.21757 1.05828 0.89736 1.00252 1.21066 0.78421 0.89357 0.81491 1.90746 1.42237 1.79231 1.35214 1.45921 1.57409 1.09184 1.23909 1.21233 0.99242 0.80687 0.97773 1.21191 0.96169 0.95177 0.97044 1.21988 0.94524 1.00674 0.98058 1.21095 0.96526 0.85593 0.95456 1.44332 1.02357 1.02025 1.84911 1.19545 0.97490 0.92567 1.29590 0.91762 1.25744 0.99330 1.02380 0.97056 1.70175 1.26096 1.28871 1.32930 0.85284 0.78149 0.80337 0.77163 1.19166 1.21847 1.21878 1.20552 0.83090 0.98639 0.92530 1.21986 0.99753 0.95616 0.98997 0.93057 0.93764 0.91933 0.92801 0.91532 0.92756 0.91378 0.86235 0.86127 0.74082 0.93524 0.93448 0.84637 0.84689 0.74455 0.92957 0.92339 0.90184 0.89105 0.93422 0.96151 0.93063 0.94184 0.93321 0.98204 0.93401 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 8.93 71.98 0.64 -1.64 16 2 C -0.08 -1.00 2.57 -10.79 -0.03 -1.02 16 3 C -0.14 -0.97 9.19 71.98 0.66 -0.31 16 4 C -0.13 -0.98 5.17 29.85 0.15 -0.83 16 5 C 0.50 8.09 7.55 87.66 0.66 8.75 16 6 O -0.59 -15.97 13.97 -3.02 -0.04 -16.01 16 7 N -0.72 -7.73 5.56 -463.05 -2.57 -10.30 16 8 C 0.14 2.34 4.96 86.38 0.43 2.77 16 9 C -0.14 -1.33 5.81 29.85 0.17 -1.15 16 10 C 0.51 10.38 7.83 87.66 0.69 11.07 16 11 O -0.59 -18.82 15.98 -3.04 -0.05 -18.87 16 12 N -0.71 -12.84 5.27 -463.06 -2.44 -15.28 16 13 C 0.13 3.34 5.06 86.37 0.44 3.78 16 14 C -0.08 -2.13 2.19 -10.66 -0.02 -2.15 16 15 C -0.11 -3.21 5.27 30.77 0.16 -3.05 16 16 C 0.14 5.23 6.50 86.36 0.56 5.79 16 17 N -0.61 -29.82 2.99 -699.08 -2.09 -31.91 16 18 C -0.26 -14.25 9.58 84.03 0.81 -13.44 16 19 H 0.06 3.43 7.89 -2.91 -0.02 3.41 16 20 C -0.05 -2.77 4.92 84.86 0.42 -2.35 16 21 N -0.93 -54.99 11.20 21.65 0.24 -54.75 16 22 Si 0.96 44.79 29.59 68.60 2.03 46.81 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 24 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 26 C 0.18 8.33 5.30 86.36 0.46 8.79 16 27 C -0.12 -4.42 5.36 30.67 0.16 -4.25 16 28 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.04 0.95 5.95 -2.39 -0.01 0.93 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.89 7.95 -2.39 -0.02 0.87 16 32 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.05 0.42 8.14 -2.38 -0.02 0.40 16 34 H 0.07 0.31 8.14 -2.38 -0.02 0.29 16 35 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.12 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.42 0.78 8.47 -92.71 -0.79 -0.01 16 38 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 39 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 40 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.42 4.76 7.65 -92.71 -0.71 4.05 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.09 1.81 7.16 -2.39 -0.02 1.79 16 47 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 50 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 51 H 0.05 2.65 6.06 -2.39 -0.01 2.63 16 52 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 53 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 54 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -80.98 424.09 0.82 -80.16 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -0.62 Total: 9.38 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: 6.36 Total: 10.76 kcal Atomic # 7 Polarization: -105.38 SS G_CDS: -6.86 Total: -112.24 kcal Atomic # 8 Polarization: -34.79 SS G_CDS: -0.09 Total: -34.88 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -80.98 0.82 -80.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362532095.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.951 kcal (2) G-P(sol) polarization free energy of solvation -80.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds