Wall clock time and date at job start Sat Apr 11 2020 05:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46937 * 2 1 4 4 C 1.52999 * 109.46953 * 240.00080 * 2 1 3 5 5 C 1.52996 * 109.47160 * 294.05472 * 4 2 1 6 6 H 1.08994 * 109.60057 * 332.31643 * 5 4 2 7 7 C 1.51332 * 109.60242 * 211.99223 * 5 4 2 8 8 O 1.21279 * 120.34923 * 128.48688 * 7 5 4 9 9 N 1.34247 * 119.30133 * 308.51627 * 7 5 4 10 10 C 1.46697 * 120.37295 * 357.10871 * 9 7 5 11 11 C 1.53038 * 109.07151 * 288.73593 * 10 9 7 12 12 C 1.52454 * 110.16913 * 88.67351 * 11 10 9 13 13 N 1.46227 * 111.64474 * 297.34878 * 12 11 10 14 14 C 1.34773 * 119.93351 * 243.00258 * 13 12 11 15 15 O 1.21593 * 119.99829 * 354.48688 * 14 13 12 16 16 N 1.34774 * 120.00136 * 174.48784 * 14 13 12 17 17 C 1.46502 * 120.00233 * 184.92811 * 16 14 13 18 18 C 1.52992 * 109.47438 * 179.97438 * 17 16 14 19 19 C 1.53001 * 109.47087 * 299.99837 * 18 17 16 20 20 C 1.53002 * 109.47220 * 59.99540 * 18 17 16 21 21 C 1.50700 * 109.47413 * 179.97438 * 18 17 16 22 22 H 1.07992 * 119.99972 * 359.97438 * 21 18 17 23 23 C 1.37876 * 119.99917 * 180.02562 * 21 18 17 24 24 N 1.31514 * 120.00272 * 359.97438 * 23 21 18 25 25 Si 1.86806 * 119.99994 * 180.02562 * 23 21 18 26 26 H 1.48501 * 109.46836 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47409 * 119.99411 * 25 23 21 28 28 H 1.48495 * 109.47025 * 239.99927 * 25 23 21 29 29 H 1.08999 * 109.46860 * 175.45409 * 1 2 3 30 30 H 1.09007 * 109.46578 * 295.45209 * 1 2 3 31 31 H 1.08998 * 109.47217 * 55.45261 * 1 2 3 32 32 H 1.09002 * 109.47194 * 119.99835 * 2 1 3 33 33 H 1.08996 * 109.47073 * 60.00302 * 3 2 1 34 34 H 1.09009 * 109.46949 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47044 * 299.99927 * 3 2 1 36 36 H 1.09002 * 109.47306 * 54.06038 * 4 2 1 37 37 H 1.09009 * 109.46962 * 174.05966 * 4 2 1 38 38 H 0.96998 * 119.81308 * 177.13012 * 9 7 5 39 39 H 1.08999 * 109.53794 * 48.61551 * 10 9 7 40 40 H 1.09005 * 109.53602 * 168.77953 * 10 9 7 41 41 H 1.08994 * 109.35292 * 208.89223 * 11 10 9 42 42 H 1.09001 * 109.35029 * 328.46180 * 11 10 9 43 43 H 1.09000 * 109.07016 * 57.86145 * 12 11 10 44 44 H 1.08997 * 109.07165 * 176.88363 * 12 11 10 45 45 H 0.96996 * 120.00034 * 4.92107 * 16 14 13 46 46 H 1.09000 * 109.46648 * 299.99999 * 17 16 14 47 47 H 1.09003 * 109.47319 * 59.99387 * 17 16 14 48 48 H 1.09000 * 109.47146 * 60.00178 * 19 18 17 49 49 H 1.09004 * 109.47402 * 179.97438 * 19 18 17 50 50 H 1.08998 * 109.46761 * 299.99498 * 19 18 17 51 51 H 1.09001 * 109.47161 * 60.00422 * 20 18 17 52 52 H 1.09002 * 109.47607 * 180.02562 * 20 18 17 53 53 H 1.09005 * 109.47085 * 300.00380 * 20 18 17 54 54 H 0.97001 * 120.00124 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6556 -2.2004 -1.1768 6 1 1.5723 -2.5058 -0.1339 7 6 2.7132 -3.0341 -1.8671 8 8 3.2118 -3.9833 -1.3002 9 7 3.0940 -2.7117 -3.1134 10 6 2.4472 -1.6027 -3.8231 11 6 1.0241 -2.0158 -4.2054 12 6 0.0565 -1.6730 -3.0783 13 7 0.3717 -2.4087 -1.8545 14 6 -0.5179 -3.2861 -1.3493 15 8 -1.6199 -3.3922 -1.8523 16 7 -0.1862 -4.0457 -0.2866 17 6 -1.1110 -5.0745 0.1957 18 6 -0.4970 -5.7871 1.4023 19 6 0.8236 -6.4409 0.9908 20 6 -0.2377 -4.7714 2.5168 21 6 -1.4486 -6.8450 1.8988 22 1 -2.3966 -6.9939 1.4035 23 6 -1.1092 -7.6220 2.9860 24 7 0.0451 -7.4403 3.5895 25 14 -2.2884 -8.9338 3.6011 26 1 -3.5093 -8.9375 2.7557 27 1 -1.6314 -10.2635 3.5282 28 1 -2.6622 -8.6428 5.0084 29 1 -0.3633 -1.0244 -0.0815 30 1 -0.3633 0.4417 0.9280 31 1 -0.3633 0.5828 -0.8464 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.5924 -0.2725 -2.1361 37 1 3.1249 -0.6300 -1.3040 38 1 3.8006 -3.2152 -3.5472 39 1 2.4110 -0.7270 -3.1751 40 1 3.0139 -1.3664 -4.7238 41 1 0.7257 -1.4876 -5.1109 42 1 0.9972 -3.0896 -4.3906 43 1 0.1124 -0.6038 -2.8738 44 1 -0.9573 -1.9232 -3.3907 45 1 0.6649 -3.9114 0.1588 46 1 -2.0520 -4.6088 0.4884 47 1 -1.2954 -5.7984 -0.5982 48 1 1.5117 -5.6755 0.6321 49 1 1.2614 -6.9482 1.8506 50 1 0.6389 -7.1645 0.1969 51 1 -1.1785 -4.3056 2.8100 52 1 0.2002 -5.2789 3.3764 53 1 0.4504 -4.0059 2.1579 54 1 0.2840 -7.9873 4.3542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459236784.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:21 Heat of formation + Delta-G solvation = -77.070505 kcal Electronic energy + Delta-G solvation = -33014.529882 eV Core-core repulsion = 28985.944258 eV Total energy + Delta-G solvation = -4028.585624 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.40634 -40.46144 -38.71961 -38.00635 -36.82592 -35.46520 -35.00247 -33.11640 -32.28197 -30.50017 -27.94739 -27.71112 -27.62389 -27.21945 -25.98607 -25.75831 -23.08562 -22.04120 -20.80011 -20.67559 -20.35018 -19.71968 -18.28636 -17.84394 -17.71640 -17.19483 -16.67651 -16.42718 -16.22411 -15.73194 -15.50237 -15.38010 -14.95480 -14.78421 -14.74289 -14.63296 -14.36782 -14.17546 -13.98225 -13.94447 -13.26258 -13.16956 -13.11536 -13.04686 -12.96022 -12.73307 -12.68240 -12.57201 -12.31062 -12.17903 -12.14233 -12.03420 -11.88580 -11.75998 -11.53497 -11.41672 -11.32872 -11.15100 -10.94447 -10.73404 -10.42448 -10.11867 -10.04450 -9.51129 -8.02659 -6.19520 1.17863 1.41399 1.44378 1.54921 1.85980 2.01530 2.34578 2.45114 2.92784 3.20461 3.24276 3.61750 3.77510 3.90299 3.96167 4.08696 4.19927 4.33323 4.34418 4.43020 4.47921 4.48755 4.59325 4.66029 4.74328 4.76737 4.81023 4.88290 4.89590 4.94082 5.00528 5.01725 5.06626 5.08545 5.14483 5.14626 5.29295 5.32899 5.37714 5.45196 5.49872 5.52373 5.58832 5.61690 5.64964 5.75299 5.91533 6.07008 6.17038 6.17642 6.40350 6.84610 6.87569 7.15258 7.48036 7.49955 8.97076 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015060 B = 0.003408 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.768796 B = 8212.918985 C = 8493.077841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.124 4.124 5 C 0.128 3.872 6 H 0.091 0.909 7 C 0.501 3.499 8 O -0.584 6.584 9 N -0.709 5.709 10 C 0.079 3.921 11 C -0.155 4.155 12 C 0.110 3.890 13 N -0.605 5.605 14 C 0.699 3.301 15 O -0.627 6.627 16 N -0.730 5.730 17 C 0.167 3.833 18 C 0.052 3.948 19 C -0.113 4.113 20 C -0.114 4.114 21 C -0.527 4.527 22 H 0.048 0.952 23 C 0.027 3.973 24 N -0.901 5.901 25 Si 0.951 3.049 26 H -0.273 1.273 27 H -0.282 1.282 28 H -0.279 1.279 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.405 0.595 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.044 0.956 43 H 0.106 0.894 44 H 0.077 0.923 45 H 0.399 0.601 46 H 0.043 0.957 47 H 0.032 0.968 48 H 0.021 0.979 49 H 0.063 0.937 50 H 0.012 0.988 51 H 0.023 0.977 52 H 0.063 0.937 53 H 0.025 0.975 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 22.212 -15.317 28.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.115 4.115 3 C -0.197 4.197 4 C -0.161 4.161 5 C 0.020 3.980 6 H 0.109 0.891 7 C 0.285 3.715 8 O -0.463 6.463 9 N -0.361 5.361 10 C -0.043 4.043 11 C -0.194 4.194 12 C -0.012 4.012 13 N -0.344 5.344 14 C 0.401 3.599 15 O -0.508 6.508 16 N -0.386 5.386 17 C 0.042 3.958 18 C 0.052 3.948 19 C -0.171 4.171 20 C -0.172 4.172 21 C -0.566 4.566 22 H 0.066 0.934 23 C -0.173 4.173 24 N -0.540 5.540 25 Si 0.777 3.223 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.205 1.205 29 H 0.050 0.950 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.241 0.759 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.063 0.937 43 H 0.124 0.876 44 H 0.096 0.904 45 H 0.237 0.763 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.040 0.960 49 H 0.082 0.918 50 H 0.032 0.968 51 H 0.043 0.957 52 H 0.082 0.918 53 H 0.044 0.956 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 8.100 21.678 -15.156 27.663 hybrid contribution -0.152 -1.744 0.748 1.904 sum 7.949 19.934 -14.408 25.848 Atomic orbital electron populations 1.21892 0.95638 1.00947 1.02080 1.21186 0.95467 0.97701 0.97114 1.21776 1.01373 0.93894 1.02657 1.22449 1.03073 0.89462 1.01097 1.21624 0.81787 0.98285 0.96295 0.89075 1.21481 0.82937 0.84109 0.82983 1.90807 1.58181 1.30414 1.66850 1.45989 1.39669 1.36042 1.14407 1.22630 0.92741 0.89475 0.99476 1.22389 0.95496 1.02182 0.99314 1.21566 1.00432 0.96960 0.82218 1.47030 1.15368 1.43800 1.28182 1.16128 0.84033 0.79284 0.80481 1.90844 1.22523 1.72925 1.64548 1.45522 1.22970 1.37788 1.32320 1.21148 0.91219 0.87557 0.95841 1.18355 0.93351 0.92916 0.90203 1.21601 0.97615 0.98307 0.99552 1.21609 0.98152 0.96536 1.00915 1.21256 1.03058 1.18212 1.14024 0.93417 1.25518 0.96605 0.98761 0.96425 1.69942 1.21948 1.40377 1.21701 0.85622 0.79348 0.79235 0.78101 1.19789 1.20803 1.20457 0.95033 0.93175 0.91177 0.92308 0.92792 0.91742 0.90997 0.85980 0.88347 0.75874 0.86677 0.85616 0.85634 0.93679 0.87634 0.90416 0.76343 0.93911 0.94974 0.95980 0.91834 0.96848 0.95745 0.91793 0.95648 0.93004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 8.92 71.98 0.64 -2.11 16 2 C -0.10 -1.43 2.79 -10.79 -0.03 -1.46 16 3 C -0.14 -1.38 9.19 71.98 0.66 -0.72 16 4 C -0.12 -1.60 2.68 30.59 0.08 -1.52 16 5 C 0.13 2.94 1.63 44.41 0.07 3.02 16 6 H 0.09 2.58 5.65 -2.39 -0.01 2.57 16 7 C 0.50 13.04 6.85 87.94 0.60 13.65 16 8 O -0.58 -21.70 17.95 -3.03 -0.05 -21.75 16 9 N -0.71 -11.51 5.29 -462.55 -2.45 -13.96 16 10 C 0.08 0.58 6.34 86.35 0.55 1.13 16 11 C -0.15 -1.80 5.93 30.43 0.18 -1.62 16 12 C 0.11 1.93 5.58 86.25 0.48 2.41 16 13 N -0.61 -15.60 1.53 -820.13 -1.26 -16.85 16 14 C 0.70 26.17 7.39 179.06 1.32 27.50 16 15 O -0.63 -27.65 15.66 -4.01 -0.06 -27.71 16 16 N -0.73 -29.65 4.83 -478.54 -2.31 -31.96 16 17 C 0.17 7.90 4.51 86.38 0.39 8.29 16 18 C 0.05 2.67 0.50 -52.93 -0.03 2.64 16 19 C -0.11 -5.81 8.08 71.98 0.58 -5.23 16 20 C -0.11 -5.55 8.08 71.98 0.58 -4.97 16 21 C -0.53 -29.47 8.01 25.60 0.21 -29.26 16 22 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 23 C 0.03 1.46 5.15 84.65 0.44 1.90 16 24 N -0.90 -50.62 9.35 21.45 0.20 -50.42 16 25 Si 0.95 44.27 29.54 68.60 2.03 46.29 16 26 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 29 H 0.03 0.79 5.63 -2.39 -0.01 0.77 16 30 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 31 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 32 H 0.06 1.08 7.98 -2.39 -0.02 1.06 16 33 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 35 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.12 0.93 3.45 -2.39 -0.01 0.92 16 37 H 0.10 1.00 7.68 -2.38 -0.02 0.98 16 38 H 0.40 5.96 8.93 -92.71 -0.83 5.13 16 39 H 0.12 0.50 3.65 -2.39 -0.01 0.49 16 40 H 0.13 0.09 8.14 -2.38 -0.02 0.07 16 41 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.04 0.84 8.04 -2.39 -0.02 0.83 16 43 H 0.11 1.11 6.32 -2.39 -0.02 1.09 16 44 H 0.08 1.80 6.85 -2.39 -0.02 1.79 16 45 H 0.40 15.75 3.79 -92.71 -0.35 15.40 16 46 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.02 1.04 6.86 -2.39 -0.02 1.03 16 49 H 0.06 3.53 6.07 -2.38 -0.01 3.52 16 50 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 51 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 52 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 53 H 0.02 1.08 6.86 -2.38 -0.02 1.06 16 54 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -75.87 396.53 2.57 -73.30 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: -0.26 Total: 29.41 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 6.73 Total: 13.64 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -5.81 Total: -113.19 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.12 Total: -49.46 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Total: -75.87 2.57 -73.30 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459236784.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.766 kcal (2) G-P(sol) polarization free energy of solvation -75.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds