Wall clock time and date at job start Sat Apr 11 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47415 * 2 1 4 4 C 1.53003 * 109.47111 * 120.00506 * 2 1 3 5 5 C 1.52997 * 109.47201 * 65.66338 * 4 2 1 6 6 H 1.09001 * 109.59928 * 27.89589 * 5 4 2 7 7 C 1.51331 * 109.73016 * 148.29253 * 5 4 2 8 8 O 1.21285 * 120.35094 * 231.54143 * 7 5 4 9 9 N 1.34252 * 119.30119 * 51.56855 * 7 5 4 10 10 C 1.46748 * 120.36852 * 2.87820 * 9 7 5 11 11 C 1.53030 * 109.09057 * 71.26537 * 10 9 7 12 12 C 1.52458 * 110.16784 * 271.34839 * 11 10 9 13 13 N 1.46064 * 111.51300 * 62.66308 * 12 11 10 14 14 C 1.34778 * 119.80988 * 117.05455 * 13 12 11 15 15 O 1.21584 * 119.99905 * 354.80194 * 14 13 12 16 16 N 1.34768 * 120.00143 * 174.81163 * 14 13 12 17 17 C 1.46496 * 120.00318 * 184.53282 * 16 14 13 18 18 C 1.53006 * 109.47651 * 179.97438 * 17 16 14 19 19 C 1.52997 * 109.46862 * 300.00177 * 18 17 16 20 20 C 1.52999 * 109.46765 * 59.99803 * 18 17 16 21 21 C 1.50695 * 109.47288 * 179.97438 * 18 17 16 22 22 H 1.08003 * 120.00351 * 359.08309 * 21 18 17 23 23 C 1.37879 * 119.99887 * 179.07732 * 21 18 17 24 24 N 1.31515 * 119.99756 * 2.81499 * 23 21 18 25 25 Si 1.86803 * 119.99925 * 182.81498 * 23 21 18 26 26 H 1.48505 * 109.46916 * 94.99682 * 25 23 21 27 27 H 1.48503 * 109.46646 * 214.99590 * 25 23 21 28 28 H 1.48492 * 109.47021 * 334.99402 * 25 23 21 29 29 H 1.09002 * 109.47176 * 184.22694 * 1 2 3 30 30 H 1.08997 * 109.46974 * 304.22833 * 1 2 3 31 31 H 1.09001 * 109.47113 * 64.22446 * 1 2 3 32 32 H 1.09002 * 109.47048 * 239.99968 * 2 1 3 33 33 H 1.08998 * 109.47203 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47062 * 300.00557 * 3 2 1 35 35 H 1.09010 * 109.46434 * 60.00057 * 3 2 1 36 36 H 1.09001 * 109.46604 * 305.66731 * 4 2 1 37 37 H 1.08996 * 109.47017 * 185.66289 * 4 2 1 38 38 H 0.97003 * 119.81486 * 182.86418 * 9 7 5 39 39 H 1.09000 * 109.50923 * 311.39040 * 10 9 7 40 40 H 1.08996 * 109.54347 * 191.16079 * 10 9 7 41 41 H 1.08998 * 109.35359 * 151.13690 * 11 10 9 42 42 H 1.08995 * 109.35567 * 31.56670 * 11 10 9 43 43 H 1.08997 * 109.06553 * 183.18494 * 12 11 10 44 44 H 1.08998 * 109.07082 * 302.19925 * 12 11 10 45 45 H 0.97006 * 119.99902 * 4.52839 * 16 14 13 46 46 H 1.09004 * 109.47089 * 299.99906 * 17 16 14 47 47 H 1.09001 * 109.47021 * 59.99581 * 17 16 14 48 48 H 1.09004 * 109.47517 * 55.03141 * 19 18 17 49 49 H 1.09003 * 109.47305 * 175.03063 * 19 18 17 50 50 H 1.08997 * 109.47425 * 295.02739 * 19 18 17 51 51 H 1.08998 * 109.47326 * 60.00167 * 20 18 17 52 52 H 1.09001 * 109.47001 * 179.97438 * 20 18 17 53 53 H 1.08999 * 109.47098 * 300.00166 * 20 18 17 54 54 H 0.97006 * 119.99779 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6496 -2.1991 1.1799 6 1 1.5662 -2.5068 0.1376 7 6 2.7001 -3.0382 1.8745 8 8 3.1948 -3.9910 1.3103 9 7 3.0784 -2.7170 3.1219 10 6 2.4352 -1.6033 3.8287 11 6 1.0084 -2.0076 4.2064 12 6 0.0468 -1.6606 3.0754 13 7 0.3641 -2.4006 1.8567 14 6 -0.5299 -3.2732 1.3508 15 8 -1.5556 -3.5132 1.9578 16 7 -0.2868 -3.8797 0.1721 17 6 -1.3011 -4.7512 -0.4262 18 6 -0.7774 -5.3084 -1.7515 19 6 -0.4716 -4.1520 -2.7055 20 6 0.4998 -6.1116 -1.4978 21 6 -1.8205 -6.2053 -2.3665 22 1 -2.7569 -6.3741 -1.8555 23 6 -1.5795 -6.8105 -3.5818 24 7 -0.4183 -6.6494 -4.1777 25 14 -2.9025 -7.8590 -4.3817 26 1 -3.6727 -7.0332 -5.3462 27 1 -2.2681 -8.9945 -5.0982 28 1 -3.8182 -8.3827 -3.3366 29 1 -0.3633 -1.0249 0.0757 30 1 -0.3633 0.5780 0.8497 31 1 -0.3633 0.4469 -0.9254 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8901 36 1 1.5961 -0.2695 2.1363 37 1 3.1252 -0.6344 1.3013 38 1 3.7807 -3.2240 3.5586 39 1 2.4063 -0.7283 3.1794 40 1 2.9992 -1.3702 4.7318 41 1 0.7098 -1.4765 5.1102 42 1 0.9745 -3.0810 4.3930 43 1 -0.9696 -1.9034 3.3851 44 1 0.1104 -0.5922 2.8691 45 1 0.5597 -3.7392 -0.2802 46 1 -1.5192 -5.5748 0.2537 47 1 -2.2109 -4.1788 -0.6072 48 1 0.2164 -3.4565 -2.2248 49 1 -0.0164 -4.5426 -3.6157 50 1 -1.3968 -3.6331 -2.9559 51 1 0.2820 -6.9354 -0.8181 52 1 0.8727 -6.5089 -2.4418 53 1 1.2545 -5.4632 -1.0527 54 1 -0.2488 -7.0748 -5.0329 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459236785.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:23 Heat of formation + Delta-G solvation = -76.164069 kcal Electronic energy + Delta-G solvation = -33028.362972 eV Core-core repulsion = 28999.816654 eV Total energy + Delta-G solvation = -4028.546318 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.41740 -40.47438 -38.70968 -38.02255 -36.82832 -35.46055 -35.00545 -33.11877 -32.27938 -30.50191 -27.93672 -27.71106 -27.62125 -27.21507 -25.97809 -25.77279 -23.08367 -22.05481 -20.80366 -20.67102 -20.34889 -19.72781 -18.29700 -17.82924 -17.71673 -17.17689 -16.68400 -16.43929 -16.26434 -15.74923 -15.47169 -15.38484 -14.94969 -14.77166 -14.74151 -14.62640 -14.36231 -14.16186 -14.00913 -13.93895 -13.28561 -13.14560 -13.11393 -13.03691 -12.95532 -12.72901 -12.67305 -12.58880 -12.29183 -12.18064 -12.14742 -12.02217 -11.88271 -11.75706 -11.52631 -11.43041 -11.31639 -11.14695 -10.94941 -10.73200 -10.42238 -10.11295 -10.05717 -9.51322 -8.02627 -6.18757 1.16812 1.42476 1.44633 1.54106 1.84470 2.03138 2.33680 2.45441 2.91094 3.20829 3.24564 3.61036 3.77461 3.90781 3.96458 4.09373 4.20999 4.33731 4.35421 4.43557 4.48417 4.48950 4.59404 4.66392 4.75049 4.77319 4.81677 4.88980 4.90528 4.94784 5.00477 5.01876 5.06442 5.09476 5.14606 5.15566 5.30243 5.33054 5.38974 5.45696 5.51024 5.53016 5.58898 5.62419 5.65815 5.74754 5.90659 6.07502 6.15928 6.17213 6.40449 6.85018 6.87500 7.13625 7.48560 7.50156 8.97270 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014969 B = 0.003435 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1870.031332 B = 8149.691751 C = 8492.241521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.124 4.124 5 C 0.128 3.872 6 H 0.092 0.908 7 C 0.501 3.499 8 O -0.587 6.587 9 N -0.709 5.709 10 C 0.079 3.921 11 C -0.154 4.154 12 C 0.110 3.890 13 N -0.605 5.605 14 C 0.699 3.301 15 O -0.628 6.628 16 N -0.729 5.729 17 C 0.166 3.834 18 C 0.053 3.947 19 C -0.112 4.112 20 C -0.115 4.115 21 C -0.528 4.528 22 H 0.047 0.953 23 C 0.028 3.972 24 N -0.901 5.901 25 Si 0.950 3.050 26 H -0.276 1.276 27 H -0.284 1.284 28 H -0.275 1.275 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.098 0.902 38 H 0.405 0.595 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.399 0.601 46 H 0.031 0.969 47 H 0.044 0.956 48 H 0.028 0.972 49 H 0.059 0.941 50 H 0.024 0.976 51 H 0.012 0.988 52 H 0.065 0.935 53 H 0.020 0.980 54 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.570 20.882 16.386 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.114 4.114 3 C -0.197 4.197 4 C -0.161 4.161 5 C 0.020 3.980 6 H 0.110 0.890 7 C 0.286 3.714 8 O -0.466 6.466 9 N -0.360 5.360 10 C -0.043 4.043 11 C -0.194 4.194 12 C -0.012 4.012 13 N -0.343 5.343 14 C 0.400 3.600 15 O -0.510 6.510 16 N -0.385 5.385 17 C 0.042 3.958 18 C 0.052 3.948 19 C -0.169 4.169 20 C -0.173 4.173 21 C -0.567 4.567 22 H 0.065 0.935 23 C -0.172 4.172 24 N -0.539 5.539 25 Si 0.776 3.224 26 H -0.202 1.202 27 H -0.209 1.209 28 H -0.200 1.200 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.241 0.759 39 H 0.133 0.867 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.063 0.937 43 H 0.096 0.904 44 H 0.124 0.876 45 H 0.237 0.763 46 H 0.049 0.951 47 H 0.062 0.938 48 H 0.046 0.954 49 H 0.078 0.922 50 H 0.043 0.957 51 H 0.031 0.969 52 H 0.084 0.916 53 H 0.039 0.961 54 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 9.010 20.289 16.269 27.523 hybrid contribution -0.262 -1.635 -0.860 1.866 sum 8.748 18.654 15.409 25.728 Atomic orbital electron populations 1.21903 0.95642 1.01080 1.02040 1.21179 0.95484 0.97676 0.97106 1.21775 1.01366 0.93927 1.02634 1.22442 1.03056 0.89468 1.01098 1.21624 0.81744 0.98297 0.96329 0.88998 1.21482 0.82778 0.84171 0.82999 1.90796 1.58229 1.30409 1.67129 1.46005 1.40035 1.35711 1.14272 1.22641 0.92755 0.89355 0.99541 1.22379 0.95492 1.02171 0.99332 1.21544 1.00502 0.96757 0.82385 1.46989 1.15114 1.43761 1.28484 1.16129 0.83367 0.79313 0.81144 1.90843 1.29383 1.68672 1.62068 1.45516 1.20937 1.50294 1.21767 1.21148 0.89392 0.90913 0.94341 1.18351 0.93689 0.93162 0.89583 1.21579 0.98335 0.96157 1.00869 1.21641 0.97221 0.98014 1.00441 1.21232 1.01684 1.28751 1.05005 0.93459 1.25504 0.97143 0.97181 0.97386 1.69947 1.22626 1.44625 1.16705 0.85678 0.79647 0.78590 0.78489 1.20171 1.20927 1.19998 0.94817 0.91179 0.93270 0.92324 0.91739 0.92856 0.90983 0.85959 0.88342 0.75854 0.86660 0.85589 0.85701 0.93720 0.90428 0.87557 0.76323 0.95074 0.93769 0.95358 0.92164 0.95660 0.96868 0.91584 0.96102 0.93016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 8.91 71.98 0.64 -2.16 16 2 C -0.10 -1.44 2.79 -10.79 -0.03 -1.47 16 3 C -0.14 -1.42 9.19 71.98 0.66 -0.76 16 4 C -0.12 -1.60 2.69 30.59 0.08 -1.52 16 5 C 0.13 2.93 1.76 44.41 0.08 3.01 16 6 H 0.09 2.60 5.41 -2.39 -0.01 2.58 16 7 C 0.50 13.03 6.86 87.94 0.60 13.63 16 8 O -0.59 -21.75 17.95 -3.05 -0.05 -21.80 16 9 N -0.71 -11.40 5.29 -462.45 -2.45 -13.84 16 10 C 0.08 0.58 6.34 86.34 0.55 1.12 16 11 C -0.15 -1.80 5.92 30.42 0.18 -1.62 16 12 C 0.11 1.92 5.56 86.28 0.48 2.40 16 13 N -0.61 -15.53 1.51 -820.54 -1.24 -16.78 16 14 C 0.70 26.10 7.36 179.06 1.32 27.42 16 15 O -0.63 -27.80 15.66 -3.98 -0.06 -27.87 16 16 N -0.73 -29.24 4.80 -478.54 -2.30 -31.54 16 17 C 0.17 7.80 4.51 86.38 0.39 8.19 16 18 C 0.05 2.66 0.50 -52.93 -0.03 2.63 16 19 C -0.11 -5.30 8.06 71.98 0.58 -4.72 16 20 C -0.12 -5.88 8.09 71.98 0.58 -5.30 16 21 C -0.53 -29.32 8.01 25.60 0.21 -29.11 16 22 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 23 C 0.03 1.52 5.14 84.65 0.44 1.95 16 24 N -0.90 -50.23 9.42 21.45 0.20 -50.03 16 25 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 28 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 29 H 0.03 0.84 5.61 -2.39 -0.01 0.83 16 30 H 0.07 1.04 8.07 -2.39 -0.02 1.02 16 31 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.09 7.99 -2.39 -0.02 1.07 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 36 H 0.12 0.92 3.45 -2.39 -0.01 0.91 16 37 H 0.10 1.00 7.70 -2.39 -0.02 0.98 16 38 H 0.40 5.86 8.93 -92.71 -0.83 5.03 16 39 H 0.12 0.49 3.66 -2.39 -0.01 0.48 16 40 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 41 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.04 0.84 8.04 -2.39 -0.02 0.82 16 43 H 0.08 1.80 6.87 -2.39 -0.02 1.78 16 44 H 0.11 1.10 6.26 -2.39 -0.01 1.08 16 45 H 0.40 15.44 3.68 -92.70 -0.34 15.10 16 46 H 0.03 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.03 1.16 6.74 -2.38 -0.02 1.14 16 49 H 0.06 3.13 6.26 -2.39 -0.01 3.12 16 50 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 51 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 52 H 0.07 3.64 6.04 -2.39 -0.01 3.62 16 53 H 0.02 0.97 6.86 -2.39 -0.02 0.95 16 54 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 Total: -1.00 -75.75 396.22 2.60 -73.15 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.25 Total: 28.94 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.73 Total: 13.70 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -5.79 Total: -112.18 kcal Atomic # 8 Polarization: -49.55 SS G_CDS: -0.12 Total: -49.67 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -75.75 2.60 -73.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459236785.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.015 kcal (2) G-P(sol) polarization free energy of solvation -75.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds