Wall clock time and date at job start Sat Apr 11 2020 05:49:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47053 * 2 1 4 4 C 1.53001 * 109.47108 * 120.00364 * 2 1 3 5 5 C 1.53005 * 109.46875 * 180.50977 * 4 2 1 6 6 H 1.08996 * 109.47156 * 54.09663 * 5 4 2 7 7 C 1.53001 * 109.46917 * 174.09697 * 5 4 2 8 8 N 1.46905 * 109.46747 * 174.99900 * 7 5 4 9 9 N 1.46498 * 109.46739 * 294.09668 * 5 4 2 10 10 C 1.34779 * 119.99804 * 155.00108 * 9 5 4 11 11 O 1.21356 * 120.00144 * 359.97438 * 10 9 5 12 12 C 1.49447 * 120.00428 * 179.97438 * 10 9 5 13 13 O 1.21357 * 119.99507 * 353.61283 * 12 10 9 14 14 N 1.34769 * 120.00465 * 173.61753 * 12 10 9 15 15 C 1.46924 * 120.63489 * 172.96613 * 14 12 10 16 16 C 1.53193 * 108.89374 * 126.33630 * 15 14 12 17 17 C 1.53347 * 109.14904 * 54.58481 * 16 15 14 18 18 C 1.52996 * 109.42147 * 178.67393 * 17 16 15 19 19 C 1.50708 * 109.47017 * 295.12437 * 18 17 16 20 20 H 1.07996 * 119.99629 * 0.02562 * 19 18 17 21 21 C 1.37872 * 119.99955 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00028 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48508 * 109.46901 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46974 * 119.99787 * 23 21 19 26 26 H 1.48497 * 109.47328 * 240.00268 * 23 21 19 27 27 C 1.53047 * 109.60392 * 298.71061 * 17 16 15 28 28 C 1.46925 * 120.63207 * 352.98524 * 14 12 10 29 29 H 1.09005 * 109.47552 * 64.88458 * 1 2 3 30 30 H 1.09000 * 109.47207 * 184.88890 * 1 2 3 31 31 H 1.09004 * 109.47362 * 304.88109 * 1 2 3 32 32 H 1.09006 * 109.46765 * 240.00591 * 2 1 3 33 33 H 1.09000 * 109.47121 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47173 * 300.00136 * 3 2 1 35 35 H 1.08997 * 109.47074 * 60.00559 * 3 2 1 36 36 H 1.08997 * 109.46891 * 60.51152 * 4 2 1 37 37 H 1.09000 * 109.46807 * 300.50598 * 4 2 1 38 38 H 1.08997 * 109.46650 * 294.99487 * 7 5 4 39 39 H 1.08994 * 109.47219 * 54.99873 * 7 5 4 40 40 H 1.00902 * 110.99732 * 56.04682 * 8 7 5 41 41 H 1.00895 * 110.99512 * 179.97438 * 8 7 5 42 42 H 0.96998 * 120.00296 * 335.00013 * 9 5 4 43 43 H 1.08992 * 109.59065 * 246.20103 * 15 14 12 44 44 H 1.09004 * 109.58655 * 6.48288 * 15 14 12 45 45 H 1.09007 * 109.49664 * 174.65955 * 16 15 14 46 46 H 1.08995 * 109.50239 * 294.75455 * 16 15 14 47 47 H 1.09003 * 109.42136 * 58.74718 * 17 16 15 48 48 H 1.09001 * 109.47582 * 55.12337 * 18 17 16 49 49 H 1.08998 * 109.47076 * 175.12687 * 18 17 16 50 50 H 0.97003 * 119.99459 * 180.02562 * 22 21 19 51 51 H 1.09004 * 109.49423 * 301.41905 * 27 17 16 52 52 H 1.09005 * 109.52155 * 181.34465 * 27 17 16 53 53 H 1.09003 * 109.58555 * 353.37772 * 28 14 12 54 54 H 1.08997 * 109.58954 * 113.65563 * 28 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7102 1.2556 6 1 3.9263 0.3149 1.1545 7 6 4.0787 -1.2994 2.5727 8 7 5.5438 -1.3995 2.5308 9 7 4.0687 -1.5132 0.1364 10 6 5.2911 -1.2690 -0.3761 11 8 5.9784 -0.3836 0.0892 12 6 5.8003 -2.0884 -1.5175 13 8 5.1654 -3.0464 -1.9073 14 7 6.9645 -1.7637 -2.1137 15 6 7.5552 -2.6433 -3.1315 16 6 7.8265 -1.8246 -4.3977 17 6 8.6890 -0.6095 -4.0358 18 6 8.9914 0.1949 -5.3016 19 6 9.8365 -0.6346 -6.2339 20 1 10.1282 -1.6354 -5.9519 21 6 10.2362 -0.1160 -7.4473 22 7 9.8804 1.1026 -7.7909 23 14 11.2842 -1.1438 -8.6026 24 1 11.5462 -2.4692 -7.9861 25 1 10.5658 -1.3301 -9.8889 26 1 12.5731 -0.4496 -8.8514 27 6 7.9378 0.2744 -3.0374 28 6 7.6673 -0.5235 -1.7580 29 1 -0.3634 0.4362 -0.9305 30 1 -0.3633 -1.0239 0.0876 31 1 -0.3634 0.5877 0.8431 32 1 1.8932 -0.5138 -0.8901 33 1 3.1299 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6841 -1.7516 1.2445 37 1 1.6692 -0.2128 2.1392 38 1 3.7822 -0.6527 3.3985 39 1 3.6507 -2.2915 2.7163 40 1 5.9620 -0.5026 2.3343 41 1 5.9045 -1.7859 3.3902 42 1 3.5193 -2.2206 -0.2358 43 1 8.4910 -3.0583 -2.7573 44 1 6.8625 -3.4529 -3.3614 45 1 8.3511 -2.4435 -5.1256 46 1 6.8811 -1.4860 -4.8215 47 1 9.6237 -0.9486 -3.5890 48 1 8.0567 0.4588 -5.7964 49 1 9.5304 1.1038 -5.0345 50 1 10.1613 1.4672 -8.6448 51 1 6.9915 0.5935 -3.4742 52 1 8.5421 1.1498 -2.7993 53 1 7.0476 0.0671 -1.0832 54 1 8.6111 -0.7656 -1.2693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580773635.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:42 Heat of formation + Delta-G solvation = -107.108253 kcal Electronic energy + Delta-G solvation = -31041.191877 eV Core-core repulsion = 27011.303718 eV Total energy + Delta-G solvation = -4029.888159 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.96244 -40.20964 -38.74262 -38.33436 -35.97507 -35.57012 -34.18606 -33.81502 -32.05010 -30.59850 -29.96932 -28.04953 -26.89831 -25.89311 -25.44882 -24.01152 -23.18998 -21.94681 -21.51722 -20.80783 -20.37201 -18.72887 -18.26180 -18.12703 -17.25142 -17.11132 -16.53309 -16.33162 -16.14216 -15.88715 -15.53851 -15.40394 -15.21555 -14.92745 -14.77676 -14.52208 -14.40468 -14.22187 -13.96765 -13.94435 -13.81000 -13.48629 -13.11486 -13.03374 -12.97338 -12.72877 -12.60249 -12.52009 -12.46079 -12.30816 -12.28233 -12.09762 -11.75153 -11.60331 -11.52611 -11.44280 -11.34021 -11.05508 -10.98067 -10.52997 -10.25444 -9.86255 -9.70063 -9.44549 -8.16451 -6.25686 0.48764 1.40181 1.41014 1.41098 1.53610 2.25885 2.42593 2.56845 3.17066 3.37557 3.51528 3.88396 3.95549 3.98394 4.05439 4.07750 4.11055 4.21773 4.31861 4.33060 4.41740 4.45721 4.57342 4.64896 4.67944 4.75692 4.80136 4.83025 4.86648 4.90785 4.97372 4.99764 5.02670 5.07172 5.09994 5.14651 5.26033 5.32314 5.34765 5.35931 5.44670 5.47228 5.49574 5.55402 5.64016 5.80701 5.89973 6.10183 6.29905 6.32427 6.38997 6.65056 6.79175 6.90990 7.10477 7.42839 8.95658 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017501 B = 0.002360 C = 0.002258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.518431 B =11861.069859 C =12399.501677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 C -0.151 4.151 4 C -0.113 4.113 5 C 0.140 3.860 6 H 0.086 0.914 7 C 0.051 3.949 8 N -0.860 5.860 9 N -0.673 5.673 10 C 0.529 3.471 11 O -0.514 6.514 12 C 0.498 3.502 13 O -0.558 6.558 14 N -0.574 5.574 15 C 0.112 3.888 16 C -0.108 4.108 17 C -0.075 4.075 18 C 0.033 3.967 19 C -0.526 4.526 20 H 0.064 0.936 21 C -0.004 4.004 22 N -0.937 5.937 23 Si 0.960 3.040 24 H -0.260 1.260 25 H -0.282 1.282 26 H -0.280 1.280 27 C -0.122 4.122 28 C 0.078 3.922 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.045 0.955 34 H 0.047 0.953 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.053 0.947 39 H 0.076 0.924 40 H 0.347 0.653 41 H 0.344 0.656 42 H 0.411 0.589 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.042 0.958 47 H 0.062 0.938 48 H -0.016 1.016 49 H -0.010 1.010 50 H 0.261 0.739 51 H 0.046 0.954 52 H 0.076 0.924 53 H 0.146 0.854 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.545 -3.912 24.711 30.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.208 4.208 4 C -0.152 4.152 5 C 0.036 3.964 6 H 0.104 0.896 7 C -0.081 4.081 8 N -0.392 5.392 9 N -0.324 5.324 10 C 0.310 3.690 11 O -0.392 6.392 12 C 0.282 3.718 13 O -0.437 6.437 14 N -0.306 5.306 15 C -0.010 4.010 16 C -0.146 4.146 17 C -0.094 4.094 18 C -0.004 4.004 19 C -0.564 4.564 20 H 0.082 0.918 21 C -0.201 4.201 22 N -0.578 5.578 23 Si 0.785 3.215 24 H -0.184 1.184 25 H -0.208 1.208 26 H -0.206 1.206 27 C -0.161 4.161 28 C -0.042 4.042 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.101 0.899 37 H 0.118 0.882 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.161 0.839 41 H 0.157 0.843 42 H 0.247 0.753 43 H 0.103 0.897 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.080 0.920 48 H 0.002 0.998 49 H 0.008 0.992 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.094 0.906 53 H 0.163 0.837 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.499 -4.156 24.120 30.087 hybrid contribution 0.579 0.242 -0.785 1.005 sum -16.920 -3.914 23.335 29.089 Atomic orbital electron populations 1.21809 0.94119 1.02282 1.01977 1.21096 0.96489 0.96103 0.98024 1.21914 1.00519 0.96296 1.02102 1.21895 0.91392 1.02466 0.99397 1.21430 0.94834 0.95355 0.84735 0.89610 1.22231 0.88944 1.01254 0.95634 1.58680 1.05622 1.33008 1.41895 1.45590 1.15734 1.37046 1.34078 1.19551 0.82929 0.83432 0.83053 1.90342 1.55696 1.32636 1.60516 1.20559 0.81590 0.85399 0.84297 1.90696 1.57109 1.30620 1.65289 1.48118 1.21265 1.23250 1.38002 1.21786 0.98923 0.92717 0.87550 1.21789 0.99156 0.97245 0.96451 1.21130 0.97426 0.95255 0.95540 1.19015 0.94385 0.94445 0.92531 1.21702 1.31490 1.01000 1.02251 0.91766 1.25957 0.97820 0.96151 1.00137 1.70117 1.47669 1.17053 1.22922 0.85473 0.78282 0.79218 0.78538 1.18351 1.20798 1.20627 1.21948 0.99916 0.98650 0.95547 1.22947 0.99455 0.84446 0.97384 0.93271 0.92019 0.91724 0.92575 0.93613 0.93380 0.91389 0.89869 0.88164 0.92913 0.90540 0.83901 0.84278 0.75267 0.89697 0.89448 0.90807 0.93946 0.91953 0.99752 0.99192 0.93025 0.93492 0.90571 0.83706 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.19 71.98 0.66 -0.75 16 2 C -0.10 -1.16 2.87 -10.79 -0.03 -1.19 16 3 C -0.15 -2.02 8.84 71.98 0.64 -1.39 16 4 C -0.11 -0.96 4.28 30.60 0.13 -0.83 16 5 C 0.14 1.83 2.16 44.99 0.10 1.93 16 6 H 0.09 1.35 5.55 -2.39 -0.01 1.34 16 7 C 0.05 0.59 6.48 86.30 0.56 1.15 16 8 N -0.86 -13.44 8.04 -186.72 -1.50 -14.94 16 9 N -0.67 -12.28 4.52 -443.86 -2.01 -14.29 16 10 C 0.53 13.08 7.04 87.27 0.61 13.69 16 11 O -0.51 -13.16 10.57 -3.27 -0.03 -13.19 16 12 C 0.50 14.99 7.74 87.27 0.68 15.66 16 13 O -0.56 -18.69 15.92 -3.27 -0.05 -18.74 16 14 N -0.57 -17.64 2.97 -820.51 -2.44 -20.08 16 15 C 0.11 3.54 6.43 86.36 0.56 4.10 16 16 C -0.11 -4.09 5.21 30.78 0.16 -3.93 16 17 C -0.07 -3.04 2.10 -10.66 -0.02 -3.06 16 18 C 0.03 1.75 4.45 29.85 0.13 1.89 16 19 C -0.53 -29.58 8.39 25.60 0.21 -29.36 16 20 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 21 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 22 N -0.94 -57.72 13.29 21.45 0.28 -57.43 16 23 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 24 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 26 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 27 C -0.12 -4.24 5.36 30.67 0.16 -4.07 16 28 C 0.08 2.29 6.03 86.36 0.52 2.81 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.86 7.80 -2.38 -0.02 0.84 16 33 H 0.04 0.74 6.29 -2.39 -0.02 0.73 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.35 6.10 7.49 -89.69 -0.67 5.42 16 41 H 0.34 4.31 9.08 -89.70 -0.81 3.49 16 42 H 0.41 7.18 8.09 -92.71 -0.75 6.43 16 43 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.09 2.77 7.00 -2.38 -0.02 2.75 16 45 H 0.07 2.94 6.93 -2.38 -0.02 2.92 16 46 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 48 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 49 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 50 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 53 H 0.15 4.10 4.20 -56.97 -0.24 3.86 16 54 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -68.31 414.41 0.26 -68.05 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: -1.56 Total: 27.06 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: 5.53 Total: -3.12 kcal Atomic # 7 Polarization: -101.08 SS G_CDS: -5.66 Total: -106.74 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.09 Total: -31.93 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -68.31 0.26 -68.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580773635.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.055 kcal (2) G-P(sol) polarization free energy of solvation -68.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds