Wall clock time and date at job start Sat Apr 11 2020 05:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53000 * 109.47117 * 239.99864 * 2 1 3 5 5 C 1.50693 * 109.47151 * 60.00322 * 4 2 1 6 6 H 1.07999 * 120.00400 * 359.97438 * 5 4 2 7 7 C 1.37885 * 119.99861 * 179.97438 * 5 4 2 8 8 N 1.31514 * 120.00097 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 119.99750 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47143 * 89.99926 * 9 7 5 11 11 H 1.48503 * 109.47104 * 210.00156 * 9 7 5 12 12 H 1.48504 * 109.47572 * 330.00261 * 9 7 5 13 13 C 1.52997 * 109.47107 * 119.99942 * 2 1 3 14 14 N 1.46505 * 109.47152 * 300.00187 * 13 2 1 15 15 C 1.34772 * 120.00130 * 180.02562 * 14 13 2 16 16 O 1.21588 * 120.00013 * 5.15267 * 15 14 13 17 17 N 1.34785 * 119.99905 * 185.15866 * 15 14 13 18 18 C 1.47081 * 120.88041 * 185.29042 * 17 15 14 19 19 C 1.53229 * 108.52295 * 231.20415 * 18 17 15 20 20 N 1.46897 * 109.34164 * 306.17387 * 19 18 17 21 21 C 1.46900 * 111.00137 * 187.25535 * 20 19 18 22 22 H 1.09006 * 110.75213 * 291.65062 * 21 20 19 23 23 C 1.55303 * 110.85079 * 55.12721 * 21 20 19 24 24 C 1.54949 * 100.97970 * 152.30423 * 23 21 20 25 25 O 1.43688 * 105.11089 * 323.61249 * 24 23 21 26 26 C 1.43239 * 109.99891 * 24.36419 * 25 24 23 27 27 C 1.46899 * 111.27428 * 63.10060 * 20 19 18 28 28 C 1.47077 * 120.87912 * 5.31128 * 17 15 14 29 29 H 1.08992 * 109.47564 * 300.00308 * 1 2 3 30 30 H 1.09004 * 109.47305 * 60.00027 * 1 2 3 31 31 H 1.09006 * 109.47137 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47119 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47141 * 299.99587 * 3 2 1 34 34 H 1.09000 * 109.47428 * 59.99757 * 3 2 1 35 35 H 1.09009 * 109.46895 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47198 * 299.99342 * 4 2 1 37 37 H 0.96996 * 119.99640 * 179.97438 * 8 7 5 38 38 H 1.09000 * 109.47378 * 180.02562 * 13 2 1 39 39 H 1.09000 * 109.47528 * 59.99831 * 13 2 1 40 40 H 0.97009 * 119.99780 * 359.97438 * 14 13 2 41 41 H 1.09005 * 109.62721 * 111.49410 * 18 17 15 42 42 H 1.09005 * 109.79073 * 351.01346 * 18 17 15 43 43 H 1.09002 * 109.49684 * 186.21471 * 19 18 17 44 44 H 1.09004 * 109.49384 * 66.12635 * 19 18 17 45 45 H 1.08996 * 111.12159 * 270.24456 * 23 21 20 46 46 H 1.09000 * 111.12403 * 34.36611 * 23 21 20 47 47 H 1.08995 * 110.30897 * 82.49068 * 24 23 21 48 48 H 1.09001 * 110.30696 * 204.66165 * 24 23 21 49 49 H 1.08998 * 109.83121 * 238.81599 * 26 25 24 50 50 H 1.09001 * 109.90313 * 117.87857 * 26 25 24 51 51 H 1.09003 * 109.49134 * 56.85678 * 27 20 19 52 52 H 1.08996 * 109.50111 * 176.93794 * 27 20 19 53 53 H 1.09000 * 109.62745 * 248.50184 * 28 17 15 54 54 H 1.08993 * 109.63143 * 8.89393 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 1 0.9165 0.8670 -2.3807 7 6 1.8713 -0.4817 -3.7319 8 7 2.6282 -1.5504 -3.8526 9 14 1.2481 0.3985 -5.2571 10 1 2.2255 1.4409 -5.6612 11 1 1.0839 -0.5808 -6.3614 12 1 -0.0605 1.0351 -4.9614 13 6 2.0399 -0.7212 1.2492 14 7 1.5515 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6695 16 8 2.6519 -1.4212 3.7829 17 7 1.3450 0.0805 4.7680 18 6 1.7736 -0.3279 6.1144 19 6 0.5273 -0.6529 6.9444 20 7 -0.3945 0.4902 6.9060 21 6 -1.5216 0.2887 7.8263 22 1 -2.1671 -0.5168 7.4760 23 6 -1.0152 0.0045 9.2667 24 6 -2.2016 0.5396 10.1076 25 8 -2.6734 1.6956 9.3965 26 6 -2.3200 1.5970 8.0119 27 6 -0.8697 0.7461 5.5398 28 6 0.3196 1.1285 4.6521 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8899 35 1 3.1300 -0.7217 -1.2490 36 1 1.6767 -1.7490 -1.2492 37 1 2.8625 -1.8818 -4.7335 38 1 3.1299 -0.7208 1.2495 39 1 1.6766 -1.7489 1.2493 40 1 0.9941 0.7583 2.3564 41 1 2.3254 0.4857 6.5855 42 1 2.4095 -1.2107 6.0474 43 1 0.8186 -0.8507 7.9760 44 1 0.0336 -1.5321 6.5303 45 1 -0.8694 -1.0635 9.4282 46 1 -0.1015 0.5598 9.4786 47 1 -2.9886 -0.2116 10.1724 48 1 -1.8623 0.8203 11.1047 49 1 -1.7043 2.4497 7.7258 50 1 -3.2216 1.5700 7.3998 51 1 -1.3438 -0.1526 5.1453 52 1 -1.5914 1.5628 5.5525 53 1 0.7315 2.0820 4.9827 54 1 -0.0053 1.2098 3.6149 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595625725.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:49 Heat of formation + Delta-G solvation = -89.600814 kcal Electronic energy + Delta-G solvation = -30682.004278 eV Core-core repulsion = 26652.875299 eV Total energy + Delta-G solvation = -4029.128979 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.63308 -40.63319 -39.13812 -38.33862 -35.74048 -35.22033 -33.93343 -32.39232 -31.83989 -30.01269 -29.09865 -27.97002 -27.96072 -26.81950 -25.13001 -24.68902 -22.87465 -22.82461 -21.62119 -20.73457 -19.99902 -18.98252 -18.35265 -17.75542 -17.43635 -17.19082 -16.75591 -16.49517 -16.04434 -15.97671 -15.75598 -15.47431 -15.41149 -15.18783 -14.94387 -14.60894 -14.46150 -14.36131 -14.08974 -13.93802 -13.71674 -13.45216 -13.16356 -12.86987 -12.73224 -12.71525 -12.58548 -12.46206 -12.33435 -12.24032 -12.20696 -12.12054 -11.98962 -11.93868 -11.71728 -11.53601 -11.31396 -10.97333 -10.84649 -10.50479 -10.48564 -10.24589 -9.70555 -9.32867 -8.13000 -6.20776 1.43415 1.43836 1.53975 1.58331 2.09298 2.44832 2.61092 2.93496 3.01084 3.21403 3.40244 3.79185 3.91414 3.95490 3.99686 4.05674 4.09254 4.17746 4.20045 4.23068 4.23975 4.30828 4.38432 4.49449 4.68290 4.70889 4.72996 4.75181 4.76501 4.79797 4.82826 4.83368 4.86388 4.93576 4.96367 5.02970 5.11346 5.12229 5.12762 5.38955 5.45005 5.49588 5.50826 5.54375 5.59402 5.80883 5.81119 5.89428 5.90883 6.01023 6.05815 6.31534 6.92717 6.96061 7.46777 7.52879 8.99471 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024624 B = 0.002002 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.820955 B =13980.649473 C =14707.504427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.064 4.064 3 C -0.120 4.120 4 C 0.040 3.960 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.276 1.276 11 H -0.291 1.291 12 H -0.258 1.258 13 C 0.161 3.839 14 N -0.724 5.724 15 C 0.700 3.300 16 O -0.639 6.639 17 N -0.629 5.629 18 C 0.133 3.867 19 C 0.050 3.950 20 N -0.524 5.524 21 C 0.050 3.950 22 H 0.058 0.942 23 C -0.145 4.145 24 C 0.048 3.952 25 O -0.408 6.408 26 C 0.060 3.940 27 C 0.041 3.959 28 C 0.113 3.887 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.057 0.943 34 H 0.067 0.933 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.408 0.592 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.109 0.891 44 H 0.027 0.973 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.067 0.933 48 H 0.097 0.903 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.032 0.968 52 H 0.110 0.890 53 H 0.092 0.908 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.069 8.009 28.227 31.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.580 5.580 9 Si 0.785 3.215 10 H -0.202 1.202 11 H -0.217 1.217 12 H -0.182 1.182 13 C 0.036 3.964 14 N -0.382 5.382 15 C 0.401 3.599 16 O -0.521 6.521 17 N -0.367 5.367 18 C 0.010 3.990 19 C -0.079 4.079 20 N -0.249 5.249 21 C -0.058 4.058 22 H 0.076 0.924 23 C -0.183 4.183 24 C -0.028 4.028 25 O -0.328 6.328 26 C -0.016 4.016 27 C -0.087 4.087 28 C -0.010 4.010 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.247 0.753 41 H 0.102 0.898 42 H 0.096 0.904 43 H 0.127 0.873 44 H 0.045 0.955 45 H 0.114 0.886 46 H 0.108 0.892 47 H 0.085 0.915 48 H 0.115 0.885 49 H 0.099 0.901 50 H 0.091 0.909 51 H 0.050 0.950 52 H 0.128 0.872 53 H 0.111 0.889 54 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.324 7.817 28.418 31.229 hybrid contribution -0.334 -0.915 -1.762 2.013 sum -10.658 6.902 26.656 29.525 Atomic orbital electron populations 1.21677 0.93464 1.00943 1.01600 1.20707 0.96785 0.96299 0.92616 1.21683 0.99895 0.94605 1.01589 1.18965 0.94273 0.94207 0.92302 1.21587 1.30371 1.12071 0.90973 0.90783 1.25976 0.95744 0.95895 1.02796 1.70127 1.38787 1.24998 1.24048 0.85523 0.79200 0.78053 0.78714 1.20227 1.21701 1.18221 1.21062 0.97489 0.94843 0.82974 1.45171 1.56355 1.33183 1.03509 1.16083 0.80622 0.81819 0.81328 1.90874 1.41763 1.33188 1.86276 1.47369 1.43000 1.41657 1.04670 1.21598 0.96352 1.01339 0.79717 1.22471 0.92931 0.91034 1.01441 1.62016 1.15885 1.39859 1.07178 1.23200 0.91854 0.97081 0.93694 0.92427 1.23343 0.99508 1.03145 0.92295 1.23494 0.95201 0.87496 0.96642 1.88405 1.80008 1.43693 1.20647 1.23155 0.98365 0.97581 0.82531 1.22538 0.96763 1.01599 0.87814 1.21937 0.87514 0.90945 1.00603 0.91322 0.92397 0.94473 0.94545 0.92348 0.91371 0.99646 0.99583 0.93226 0.94015 0.93992 0.75269 0.89800 0.90446 0.87328 0.95474 0.88626 0.89161 0.91456 0.88465 0.90067 0.90927 0.94964 0.87212 0.88950 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 8.05 71.98 0.58 -3.33 16 2 C -0.06 -2.38 0.54 -52.18 -0.03 -2.41 16 3 C -0.12 -4.00 8.05 71.98 0.58 -3.42 16 4 C 0.04 2.04 4.04 29.85 0.12 2.16 16 5 C -0.51 -27.21 7.65 25.60 0.20 -27.01 16 6 H 0.07 3.65 5.68 -2.91 -0.02 3.64 16 7 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 8 N -0.94 -57.07 13.29 21.45 0.28 -56.78 16 9 Si 0.96 43.36 29.54 68.60 2.03 45.38 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 C 0.16 5.88 4.57 86.38 0.39 6.27 16 14 N -0.72 -20.59 4.82 -478.53 -2.30 -22.90 16 15 C 0.70 21.51 8.30 179.05 1.49 22.99 16 16 O -0.64 -25.76 15.81 -3.99 -0.06 -25.82 16 17 N -0.63 -13.62 3.01 -835.93 -2.52 -16.14 16 18 C 0.13 2.49 6.61 86.35 0.57 3.06 16 19 C 0.05 0.69 5.42 86.38 0.47 1.16 16 20 N -0.52 -6.35 4.45 -862.66 -3.84 -10.18 16 21 C 0.05 0.54 2.69 46.18 0.12 0.66 16 22 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 23 C -0.15 -1.22 5.18 32.05 0.17 -1.06 16 24 C 0.05 0.47 7.78 72.65 0.57 1.04 16 25 O -0.41 -6.43 11.36 -148.98 -1.69 -8.12 16 26 C 0.06 0.72 6.45 72.45 0.47 1.19 16 27 C 0.04 0.49 5.51 86.39 0.48 0.97 16 28 C 0.11 1.58 6.49 86.35 0.56 2.14 16 29 H 0.07 1.65 6.86 -2.39 -0.02 1.64 16 30 H 0.06 2.02 6.62 -2.38 -0.02 2.00 16 31 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.06 2.05 6.62 -2.39 -0.02 2.04 16 34 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 35 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 36 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 37 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.41 8.97 3.82 -92.70 -0.35 8.61 16 41 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.08 1.80 7.05 -2.38 -0.02 1.78 16 43 H 0.11 1.08 6.62 -2.39 -0.02 1.07 16 44 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 45 H 0.10 0.57 8.02 -2.39 -0.02 0.55 16 46 H 0.09 0.82 8.06 -2.39 -0.02 0.80 16 47 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.08 0.99 8.00 -2.39 -0.02 0.97 16 50 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 52 H 0.11 0.88 7.20 -2.39 -0.02 0.86 16 53 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 54 H 0.09 1.13 5.85 -2.39 -0.01 1.12 16 Total: -1.00 -72.82 405.93 -0.39 -73.21 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.52 Total: 16.90 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: 7.19 Total: 4.45 kcal Atomic # 7 Polarization: -97.63 SS G_CDS: -8.37 Total: -106.01 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -1.76 Total: -33.94 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Total: -72.82 -0.39 -73.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595625725.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.393 kcal (2) G-P(sol) polarization free energy of solvation -72.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds