Wall clock time and date at job start Sat Apr 11 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47447 * 2 1 4 4 C 1.53003 * 109.46801 * 120.00195 * 2 1 3 5 5 C 1.50702 * 109.46929 * 299.99699 * 4 2 1 6 6 H 1.08001 * 120.00255 * 0.02562 * 5 4 2 7 7 C 1.37880 * 120.00318 * 179.72617 * 5 4 2 8 8 N 1.31523 * 119.99375 * 0.27760 * 7 5 4 9 9 Si 1.86793 * 120.00245 * 180.27547 * 7 5 4 10 10 H 1.48495 * 109.47094 * 60.00471 * 9 7 5 11 11 H 1.48505 * 109.46954 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47340 * 300.00192 * 9 7 5 13 13 C 1.52999 * 109.47161 * 239.99337 * 2 1 3 14 14 N 1.46505 * 109.46605 * 60.00632 * 13 2 1 15 15 C 1.34783 * 119.99701 * 179.97438 * 14 13 2 16 16 O 1.21581 * 120.00128 * 354.91526 * 15 14 13 17 17 N 1.34771 * 119.99597 * 174.91920 * 15 14 13 18 18 C 1.47088 * 120.87985 * 184.71708 * 17 15 14 19 19 C 1.53694 * 108.27605 * 128.75399 * 18 17 15 20 20 N 1.46899 * 109.26128 * 54.08104 * 19 18 17 21 21 C 1.46899 * 111.00030 * 172.60606 * 20 19 18 22 22 H 1.08996 * 110.43336 * 65.00915 * 21 20 19 23 23 C 1.54814 * 110.48766 * 302.45974 * 21 20 19 24 24 C 1.55231 * 101.98375 * 220.51861 * 23 21 20 25 25 O 1.44381 * 103.56783 * 36.88375 * 24 23 21 26 26 C 1.43746 * 106.97251 * 320.01151 * 25 24 23 27 27 C 1.46900 * 111.26809 * 296.75895 * 20 19 18 28 28 C 1.47076 * 120.88536 * 4.99236 * 17 15 14 29 29 H 1.08994 * 109.47098 * 300.00338 * 1 2 3 30 30 H 1.09001 * 109.46933 * 60.00164 * 1 2 3 31 31 H 1.09000 * 109.47232 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47381 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46921 * 299.99843 * 3 2 1 34 34 H 1.09002 * 109.46667 * 59.99711 * 3 2 1 35 35 H 1.09004 * 109.47102 * 180.02562 * 4 2 1 36 36 H 1.09000 * 109.47476 * 59.99846 * 4 2 1 37 37 H 0.97001 * 119.99177 * 179.97438 * 8 7 5 38 38 H 1.09005 * 109.47101 * 179.97438 * 13 2 1 39 39 H 1.09000 * 109.47500 * 300.00390 * 13 2 1 40 40 H 0.96992 * 120.00462 * 359.97438 * 14 13 2 41 41 H 1.08997 * 109.62837 * 248.52031 * 18 17 15 42 42 H 1.09004 * 109.62449 * 9.10210 * 18 17 15 43 43 H 1.09007 * 109.64684 * 294.07716 * 19 18 17 44 44 H 1.09001 * 109.44343 * 173.96734 * 19 18 17 45 45 H 1.09003 * 110.90929 * 338.64167 * 23 21 20 46 46 H 1.08999 * 110.90477 * 102.24603 * 23 21 20 47 47 H 1.08993 * 110.52168 * 278.38656 * 24 23 21 48 48 H 1.09003 * 110.63759 * 155.43585 * 24 23 21 49 49 H 1.09005 * 109.87469 * 267.08812 * 26 25 24 50 50 H 1.09004 * 109.87625 * 145.94155 * 26 25 24 51 51 H 1.09001 * 109.49133 * 303.13898 * 27 20 19 52 52 H 1.09005 * 109.51371 * 183.07604 * 27 20 19 53 53 H 1.08999 * 109.63007 * 350.89651 * 28 17 15 54 54 H 1.09008 * 109.63180 * 111.48075 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5376 -0.0109 2.4797 6 1 0.9165 0.8671 2.3806 7 6 1.8659 -0.4852 3.7320 8 7 2.6221 -1.5545 3.8527 9 14 1.2369 0.3910 5.2571 10 1 -0.2480 0.3903 5.2513 11 1 1.7280 -0.3118 6.4697 12 1 1.7313 1.7912 5.2629 13 6 2.0401 -0.7214 -1.2491 14 7 1.5518 -0.0307 -2.4454 15 6 1.8778 -0.4910 -3.6695 16 8 2.6511 -1.4223 -3.7827 17 7 1.3467 0.0813 -4.7680 18 6 1.6072 -0.4692 -6.1069 19 6 0.2592 -0.6603 -6.8201 20 7 -0.4817 0.6081 -6.8040 21 6 -1.6964 0.5187 -7.6252 22 1 -2.3929 -0.2022 -7.1972 23 6 -1.3392 0.1291 -9.0804 24 6 -2.2954 1.0360 -9.9008 25 8 -2.3282 2.2654 -9.1445 26 6 -2.3632 1.9019 -7.7541 27 6 -0.8034 1.0199 -5.4311 28 6 0.4960 1.2763 -4.6604 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.1300 -0.7210 1.2495 36 1 1.6766 -1.7490 1.2493 37 1 2.8533 -1.8880 4.7338 38 1 3.1301 -0.7210 -1.2494 39 1 1.6767 -1.7490 -1.2491 40 1 0.9939 0.7577 -2.3565 41 1 2.2293 0.2240 -6.6730 42 1 2.1141 -1.4298 -6.0155 43 1 -0.3213 -1.4272 -6.3071 44 1 0.4346 -0.9661 -7.8515 45 1 -0.2975 0.3624 -9.3010 46 1 -1.5474 -0.9251 -9.2630 47 1 -3.2894 0.5924 -9.9555 48 1 -1.8962 1.2105 -10.9000 49 1 -3.3964 1.8487 -7.4109 50 1 -1.8122 2.6354 -7.1654 51 1 -1.3692 0.2296 -4.9375 52 1 -1.3985 1.9328 -5.4548 53 1 0.2679 1.4702 -3.6123 54 1 1.0135 2.1340 -5.0903 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595625726.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:51 Heat of formation + Delta-G solvation = -86.939876 kcal Electronic energy + Delta-G solvation = -30756.695481 eV Core-core repulsion = 26727.681888 eV Total energy + Delta-G solvation = -4029.013592 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.64346 -40.62951 -39.10688 -38.31606 -35.72415 -35.21778 -33.93204 -32.39023 -31.80134 -29.90861 -29.09617 -27.97079 -27.96497 -26.80657 -25.13760 -24.72714 -23.04924 -22.75889 -21.46906 -20.74088 -19.99280 -18.98870 -18.34919 -17.72287 -17.31674 -17.20365 -16.75820 -16.49400 -16.16412 -16.02297 -15.78356 -15.47572 -15.40944 -15.21132 -15.04854 -14.61374 -14.42604 -14.35191 -13.93769 -13.79858 -13.70229 -13.35787 -13.00594 -12.83572 -12.74987 -12.71405 -12.58094 -12.43501 -12.32878 -12.31768 -12.21905 -12.12023 -11.98667 -11.92384 -11.75286 -11.53645 -11.31824 -10.97468 -10.85420 -10.60261 -10.49568 -10.25132 -9.68155 -9.29956 -8.12720 -6.20643 1.43388 1.45663 1.52656 1.58127 2.09274 2.45078 2.69858 2.91397 3.04186 3.21485 3.47231 3.79057 3.91909 3.95336 4.00461 4.08873 4.12814 4.17945 4.21963 4.23052 4.23858 4.32007 4.41549 4.50509 4.67129 4.69145 4.71092 4.72785 4.74993 4.80225 4.81945 4.85040 4.87069 4.91891 4.95805 5.03318 5.10957 5.11922 5.12320 5.38365 5.44866 5.49030 5.50631 5.54009 5.59055 5.80969 5.81898 5.88032 5.90702 5.97308 6.07485 6.31444 6.92461 6.95803 7.46840 7.52525 8.99523 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023472 B = 0.002046 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.642085 B =13682.755166 C =14439.965624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.121 4.121 4 C 0.040 3.960 5 C -0.513 4.513 6 H 0.074 0.926 7 C -0.007 4.007 8 N -0.938 5.938 9 Si 0.960 3.040 10 H -0.266 1.266 11 H -0.292 1.292 12 H -0.266 1.266 13 C 0.161 3.839 14 N -0.724 5.724 15 C 0.700 3.300 16 O -0.639 6.639 17 N -0.629 5.629 18 C 0.134 3.866 19 C 0.050 3.950 20 N -0.528 5.528 21 C 0.050 3.950 22 H 0.059 0.941 23 C -0.146 4.146 24 C 0.044 3.956 25 O -0.401 6.401 26 C 0.053 3.947 27 C 0.039 3.961 28 C 0.113 3.887 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.067 0.933 34 H 0.058 0.942 35 H -0.015 1.015 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.407 0.593 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.029 0.971 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.069 0.931 50 H 0.093 0.907 51 H 0.035 0.965 52 H 0.111 0.889 53 H 0.092 0.908 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.383 8.181 -27.916 31.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.064 4.064 3 C -0.178 4.178 4 C 0.003 3.997 5 C -0.551 4.551 6 H 0.092 0.908 7 C -0.204 4.204 8 N -0.579 5.579 9 Si 0.785 3.215 10 H -0.191 1.191 11 H -0.219 1.219 12 H -0.191 1.191 13 C 0.036 3.964 14 N -0.383 5.383 15 C 0.401 3.599 16 O -0.521 6.521 17 N -0.367 5.367 18 C 0.011 3.989 19 C -0.078 4.078 20 N -0.254 5.254 21 C -0.059 4.059 22 H 0.077 0.923 23 C -0.183 4.183 24 C -0.032 4.032 25 O -0.320 6.320 26 C -0.024 4.024 27 C -0.089 4.089 28 C -0.009 4.009 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.004 0.996 36 H 0.004 0.996 37 H 0.068 0.932 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.247 0.753 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.047 0.953 44 H 0.125 0.875 45 H 0.104 0.896 46 H 0.112 0.888 47 H 0.088 0.912 48 H 0.121 0.879 49 H 0.087 0.913 50 H 0.112 0.888 51 H 0.053 0.947 52 H 0.129 0.871 53 H 0.110 0.890 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -11.480 7.978 -28.142 31.423 hybrid contribution -0.483 -0.825 1.814 2.051 sum -11.963 7.152 -26.328 29.790 Atomic orbital electron populations 1.21675 0.93481 1.00926 1.01576 1.20709 0.96767 0.96303 0.92616 1.21684 0.99912 0.94602 1.01586 1.18963 0.94280 0.94196 0.92284 1.21556 1.30518 1.12048 0.90982 0.90806 1.25980 0.95741 0.95888 1.02799 1.70128 1.38788 1.24920 1.24106 0.85572 0.78963 0.78712 0.78221 1.19084 1.21851 1.19131 1.21065 0.97487 0.94851 0.82965 1.45185 1.56173 1.33420 1.03511 1.16075 0.80543 0.81913 0.81332 1.90873 1.41007 1.33875 1.86313 1.47376 1.52824 1.31310 1.05175 1.21685 0.96881 0.99865 0.80466 1.22538 0.93701 0.89901 1.01706 1.62079 1.21561 1.30622 1.11124 1.23079 0.90893 0.97201 0.94692 0.92307 1.23284 1.01520 1.01067 0.92462 1.23720 0.99142 0.83928 0.96446 1.88876 1.95598 1.29947 1.17587 1.23312 0.99902 0.95790 0.83374 1.22574 0.96464 1.01937 0.87957 1.21930 0.90634 0.87177 1.01192 0.92367 0.91377 0.94501 0.94528 0.91377 0.92338 0.99635 0.99590 0.93224 0.94019 0.93982 0.75298 0.90078 0.90492 0.95285 0.87530 0.89592 0.88776 0.91196 0.87886 0.91301 0.88845 0.94667 0.87147 0.88990 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.92 8.05 71.98 0.58 -3.34 16 2 C -0.06 -2.39 0.54 -52.18 -0.03 -2.41 16 3 C -0.12 -4.02 8.05 71.98 0.58 -3.44 16 4 C 0.04 2.06 4.04 29.85 0.12 2.18 16 5 C -0.51 -27.30 7.65 25.60 0.20 -27.10 16 6 H 0.07 3.64 5.68 -2.91 -0.02 3.62 16 7 C -0.01 -0.41 5.46 84.65 0.46 0.06 16 8 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 9 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 10 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 12 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.16 5.91 4.57 86.38 0.39 6.30 16 14 N -0.72 -20.83 4.87 -478.52 -2.33 -23.16 16 15 C 0.70 21.78 8.31 179.05 1.49 23.26 16 16 O -0.64 -25.98 15.83 -3.97 -0.06 -26.05 16 17 N -0.63 -13.95 3.00 -835.03 -2.51 -16.46 16 18 C 0.13 2.60 6.61 86.50 0.57 3.17 16 19 C 0.05 0.71 5.42 86.54 0.47 1.18 16 20 N -0.53 -6.67 4.41 -863.29 -3.81 -10.48 16 21 C 0.05 0.53 2.77 45.91 0.13 0.66 16 22 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 23 C -0.15 -1.26 5.52 31.98 0.18 -1.08 16 24 C 0.04 0.42 7.72 72.75 0.56 0.98 16 25 O -0.40 -6.30 11.52 -148.98 -1.72 -8.01 16 26 C 0.05 0.61 6.85 72.35 0.50 1.11 16 27 C 0.04 0.47 5.40 86.38 0.47 0.94 16 28 C 0.11 1.65 6.59 86.35 0.57 2.22 16 29 H 0.06 2.03 6.62 -2.39 -0.02 2.02 16 30 H 0.07 1.66 6.86 -2.39 -0.02 1.64 16 31 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.70 6.86 -2.39 -0.02 1.68 16 34 H 0.06 2.06 6.62 -2.39 -0.02 2.05 16 35 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 36 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 37 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 38 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.41 9.08 3.66 -92.71 -0.34 8.74 16 41 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.83 7.09 -2.38 -0.02 1.81 16 43 H 0.03 0.49 8.14 -2.38 -0.02 0.47 16 44 H 0.11 1.14 6.52 -2.39 -0.02 1.12 16 45 H 0.09 0.86 7.53 -2.39 -0.02 0.85 16 46 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 48 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 50 H 0.09 1.07 6.57 -2.39 -0.02 1.05 16 51 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.11 0.89 6.34 -2.38 -0.02 0.87 16 53 H 0.09 1.15 5.63 -2.39 -0.01 1.14 16 54 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 Total: -1.00 -73.12 403.74 -0.35 -73.47 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: 0.54 Total: 17.46 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 7.23 Total: 4.68 kcal Atomic # 7 Polarization: -98.56 SS G_CDS: -8.37 Total: -106.93 kcal Atomic # 8 Polarization: -32.28 SS G_CDS: -1.78 Total: -34.06 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Total: -73.12 -0.35 -73.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595625726.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.474 kcal (2) G-P(sol) polarization free energy of solvation -73.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds