Wall clock time and date at job start Sat Apr 11 2020 05:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47007 * 2 1 4 4 C 1.53000 * 109.47440 * 239.99728 * 2 1 3 5 5 C 1.52999 * 109.46996 * 119.99725 * 2 1 3 6 6 H 1.08999 * 109.51446 * 299.90391 * 5 2 1 7 7 C 1.52873 * 109.62668 * 179.90664 * 5 2 1 8 8 N 1.47154 * 108.61234 * 187.90018 * 7 5 2 9 9 C 1.34774 * 120.98318 * 230.50404 * 8 7 5 10 10 O 1.21592 * 119.99960 * 5.29133 * 9 8 7 11 11 N 1.34773 * 120.00103 * 185.28977 * 9 8 7 12 12 C 1.46503 * 120.00134 * 175.07951 * 11 9 8 13 13 C 1.53045 * 109.46039 * 205.00270 * 12 11 9 14 14 C 1.53193 * 109.31332 * 178.61403 * 13 12 11 15 15 N 1.46932 * 108.77401 * 54.62944 * 14 13 12 16 16 C 1.36938 * 120.62615 * 126.36683 * 15 14 13 17 17 H 1.08000 * 120.00391 * 334.43091 * 16 15 14 18 18 C 1.38819 * 119.99759 * 154.42065 * 16 15 14 19 19 N 1.31618 * 119.99526 * 155.21646 * 18 16 15 20 20 Si 1.86797 * 119.99976 * 335.22045 * 18 16 15 21 21 H 1.48498 * 109.47110 * 85.72570 * 20 18 16 22 22 H 1.48496 * 109.47047 * 205.72345 * 20 18 16 23 23 H 1.48497 * 109.47520 * 325.72628 * 20 18 16 24 24 C 1.46920 * 118.74070 * 306.64455 * 15 14 13 25 25 C 1.52763 * 109.00829 * 53.31126 * 24 15 14 26 26 C 1.47148 * 118.03484 * 50.22406 * 8 7 5 27 27 C 1.53293 * 108.38640 * 309.72229 * 26 8 7 28 28 O 1.42959 * 109.22540 * 52.29874 * 27 26 8 29 29 H 1.08998 * 109.47078 * 299.99859 * 1 2 3 30 30 H 1.09004 * 109.46633 * 60.00508 * 1 2 3 31 31 H 1.08997 * 109.46993 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47097 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47195 * 299.99644 * 3 2 1 34 34 H 1.08998 * 109.47087 * 60.00147 * 3 2 1 35 35 H 1.09004 * 109.47011 * 300.00390 * 4 2 1 36 36 H 1.09005 * 109.46669 * 60.00112 * 4 2 1 37 37 H 1.08991 * 109.47423 * 179.97438 * 4 2 1 38 38 H 1.09000 * 109.61622 * 68.07844 * 7 5 2 39 39 H 1.09007 * 109.52885 * 307.66492 * 7 5 2 40 40 H 0.96996 * 120.00108 * 355.07783 * 11 9 8 41 41 H 1.09006 * 109.45877 * 324.96773 * 12 11 9 42 42 H 1.09001 * 109.50037 * 58.65826 * 13 12 11 43 43 H 1.09004 * 109.51668 * 298.57902 * 13 12 11 44 44 H 1.09000 * 109.58530 * 294.84610 * 14 13 12 45 45 H 1.09001 * 109.58728 * 174.41859 * 14 13 12 46 46 H 0.97007 * 119.99278 * 180.02562 * 19 18 16 47 47 H 1.08997 * 109.58501 * 173.14438 * 24 15 14 48 48 H 1.08996 * 109.58537 * 293.56901 * 24 15 14 49 49 H 1.09004 * 109.56246 * 185.55475 * 25 24 15 50 50 H 1.08995 * 109.38737 * 65.51327 * 25 24 15 51 51 H 1.09009 * 109.68276 * 69.44334 * 26 8 7 52 52 H 1.09000 * 109.68574 * 189.95956 * 26 8 7 53 53 H 1.09004 * 109.51380 * 172.22458 * 27 26 8 54 54 H 1.09006 * 109.51446 * 292.37425 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6785 -0.2069 2.1397 7 6 3.5687 -0.7253 1.2517 8 7 4.0343 -1.5826 2.3534 9 6 4.9520 -1.1408 3.2361 10 8 5.3366 0.0116 3.1876 11 7 5.4433 -1.9764 4.1725 12 6 6.5177 -1.5290 5.0623 13 6 7.3030 -2.7431 5.5639 14 6 8.4467 -2.2692 6.4662 15 7 7.8892 -1.4278 7.5339 16 6 8.1528 -1.7037 8.8490 17 1 8.3983 -2.7112 9.1508 18 6 8.1048 -0.6883 9.7944 19 7 7.8694 -0.9755 11.0571 20 14 8.3739 1.0855 9.2743 21 1 7.0873 1.6673 8.8147 22 1 8.8865 1.8672 10.4281 23 1 9.3619 1.1322 8.1667 24 6 7.0385 -0.2885 7.1640 25 6 5.9150 -0.7813 6.2537 26 6 3.4637 -2.9342 2.4666 27 6 1.9361 -2.8206 2.4081 28 8 1.5639 -2.0693 1.2502 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7490 -1.2492 36 1 1.6768 -0.2074 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 3.9372 0.2903 1.3960 39 1 3.9336 -1.1173 0.3023 40 1 5.0854 -2.8739 4.2574 41 1 7.1873 -0.8636 4.5171 42 1 7.7124 -3.2884 4.7135 43 1 6.6398 -3.3971 6.1303 44 1 9.1593 -1.6900 5.8790 45 1 8.9476 -3.1322 6.9049 46 1 7.8355 -0.2659 11.7176 47 1 6.6105 0.1550 8.0630 48 1 7.6339 0.4555 6.6349 49 1 5.3366 0.0698 5.8943 50 1 5.2643 -1.4531 6.8134 51 1 3.8177 -3.5524 1.6415 52 1 3.7631 -3.3810 3.4147 53 1 1.4988 -3.8175 2.3513 54 1 1.5741 -2.3139 3.3028 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619205266.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:08 Heat of formation + Delta-G solvation = -69.172096 kcal Electronic energy + Delta-G solvation = -31485.557664 eV Core-core repulsion = 27457.314540 eV Total energy + Delta-G solvation = -4028.243124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83425 -40.40965 -39.18946 -37.42292 -36.13671 -35.78171 -34.04493 -32.02745 -31.97899 -31.31863 -28.97573 -28.18825 -27.82156 -26.69884 -25.20252 -24.42345 -23.96416 -23.03084 -21.39126 -20.74241 -19.96367 -19.31586 -18.72072 -17.88072 -17.33441 -17.07822 -16.80125 -16.30450 -16.12870 -15.95866 -15.77904 -15.48898 -15.33809 -15.04414 -14.76559 -14.60204 -14.55692 -14.39860 -14.32399 -14.07040 -13.83397 -13.44814 -13.29103 -13.09659 -12.79116 -12.72381 -12.70264 -12.52709 -12.38862 -12.24716 -12.11224 -12.03975 -11.83712 -11.71255 -11.58640 -11.56012 -11.47007 -11.42456 -11.16615 -11.07677 -10.70620 -10.16879 -9.46859 -9.00986 -8.19246 -5.45772 1.28506 1.39032 1.45129 1.47650 2.03841 2.40391 2.66386 2.80030 2.99988 3.34943 3.58250 3.74882 3.78273 3.88480 3.91379 3.95095 4.03869 4.11110 4.20610 4.23035 4.29646 4.33889 4.44868 4.46766 4.53553 4.66108 4.67739 4.69628 4.74461 4.79183 4.83247 4.84962 4.89621 4.94448 4.95896 5.00539 5.06116 5.06932 5.08714 5.14300 5.16502 5.24673 5.36847 5.41373 5.47534 5.49825 5.52073 5.82650 5.86171 6.11600 6.13427 6.87984 6.89548 7.47574 7.61155 8.02417 9.00110 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021165 B = 0.002464 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.618260 B =11362.833700 C =11828.943398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.056 4.056 3 C -0.146 4.146 4 C -0.137 4.137 5 C 0.095 3.905 6 H 0.045 0.955 7 C 0.099 3.901 8 N -0.633 5.633 9 C 0.703 3.297 10 O -0.631 6.631 11 N -0.725 5.725 12 C 0.179 3.821 13 C -0.123 4.123 14 C 0.143 3.857 15 N -0.618 5.618 16 C -0.245 4.245 17 H 0.063 0.937 18 C -0.029 4.029 19 N -0.948 5.948 20 Si 0.929 3.071 21 H -0.275 1.275 22 H -0.308 1.308 23 H -0.272 1.272 24 C 0.127 3.873 25 C -0.129 4.129 26 C 0.073 3.927 27 C 0.046 3.954 28 O -0.375 6.375 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.051 0.949 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.408 0.592 41 H 0.065 0.935 42 H 0.097 0.903 43 H 0.072 0.928 44 H 0.034 0.966 45 H 0.071 0.929 46 H 0.261 0.739 47 H 0.052 0.948 48 H 0.022 0.978 49 H 0.052 0.948 50 H 0.063 0.937 51 H 0.094 0.906 52 H 0.102 0.898 53 H 0.136 0.864 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.438 -4.983 -27.439 31.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.057 4.057 3 C -0.203 4.203 4 C -0.194 4.194 5 C 0.036 3.964 6 H 0.063 0.937 7 C -0.024 4.024 8 N -0.371 5.371 9 C 0.404 3.596 10 O -0.512 6.512 11 N -0.381 5.381 12 C 0.074 3.926 13 C -0.163 4.163 14 C 0.018 3.982 15 N -0.343 5.343 16 C -0.374 4.374 17 H 0.081 0.919 18 C -0.224 4.224 19 N -0.594 5.594 20 Si 0.759 3.241 21 H -0.202 1.202 22 H -0.236 1.236 23 H -0.197 1.197 24 C 0.001 3.999 25 C -0.169 4.169 26 C -0.050 4.050 27 C -0.031 4.031 28 O -0.294 6.294 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.247 0.753 41 H 0.084 0.916 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.052 0.948 45 H 0.090 0.910 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.071 0.929 50 H 0.081 0.919 51 H 0.112 0.888 52 H 0.120 0.880 53 H 0.154 0.846 54 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -15.236 -4.216 -27.487 31.709 hybrid contribution 0.335 0.931 0.997 1.404 sum -14.901 -3.285 -26.491 30.571 Atomic orbital electron populations 1.21764 0.93158 1.02253 1.01897 1.20535 0.96897 0.94847 0.93412 1.21948 1.01187 0.94475 1.02735 1.21851 1.00786 1.00651 0.96088 1.22350 0.91680 0.83748 0.98623 0.93685 1.22264 0.94990 0.96121 0.89050 1.47373 1.43101 1.16901 1.29756 1.16040 0.79658 0.84270 0.79607 1.90891 1.65236 1.18720 1.76397 1.45251 1.40364 1.17038 1.35476 1.20567 0.87276 0.96377 0.88422 1.22155 0.98034 0.96176 0.99914 1.21115 0.93992 0.94349 0.88750 1.44559 1.54990 1.32233 1.02501 1.18896 1.41890 0.93884 0.82755 0.91900 1.25742 1.00753 1.00941 0.94965 1.69990 1.52824 1.33771 1.02816 0.86241 0.78567 0.82937 0.76402 1.20241 1.23623 1.19691 1.21208 0.91704 0.89949 0.97028 1.22146 0.98107 1.00040 0.96622 1.22597 0.95054 0.82759 1.04552 1.23123 0.93210 0.98425 0.88338 1.87935 1.75696 1.23261 1.42479 0.93323 0.91371 0.92199 0.92649 0.90430 0.92990 0.92069 0.91505 0.92648 0.89913 0.89594 0.75325 0.91635 0.88455 0.90898 0.94835 0.91009 0.92980 0.92970 0.96018 0.92899 0.91873 0.88764 0.87979 0.84647 0.93476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 8.33 71.98 0.60 -1.09 16 2 C -0.06 -0.78 0.63 -52.18 -0.03 -0.81 16 3 C -0.15 -2.00 8.13 71.98 0.59 -1.41 16 4 C -0.14 -1.64 7.99 71.98 0.58 -1.06 16 5 C 0.09 1.64 2.02 30.55 0.06 1.70 16 6 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 7 C 0.10 1.97 5.15 86.21 0.44 2.42 16 8 N -0.63 -13.38 3.03 -836.15 -2.53 -15.91 16 9 C 0.70 20.08 8.27 179.06 1.48 21.56 16 10 O -0.63 -23.93 15.47 -4.00 -0.06 -23.99 16 11 N -0.72 -17.97 4.99 -457.67 -2.28 -20.25 16 12 C 0.18 5.52 2.38 45.02 0.11 5.63 16 13 C -0.12 -3.41 5.55 30.67 0.17 -3.24 16 14 C 0.14 5.19 6.52 86.36 0.56 5.75 16 15 N -0.62 -28.92 2.78 -699.92 -1.95 -30.87 16 16 C -0.24 -13.71 10.01 84.03 0.84 -12.87 16 17 H 0.06 3.75 8.05 -2.91 -0.02 3.73 16 18 C -0.03 -1.68 5.15 84.86 0.44 -1.25 16 19 N -0.95 -59.49 13.97 21.65 0.30 -59.19 16 20 Si 0.93 47.77 24.62 68.60 1.69 49.46 16 21 H -0.28 -13.62 6.28 99.48 0.62 -13.00 16 22 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 23 H -0.27 -13.73 7.11 99.48 0.71 -13.02 16 24 C 0.13 5.71 4.20 86.22 0.36 6.07 16 25 C -0.13 -4.79 5.64 30.53 0.17 -4.62 16 26 C 0.07 0.94 6.57 86.35 0.57 1.50 16 27 C 0.05 0.57 6.98 72.08 0.50 1.07 16 28 O -0.38 -5.98 9.04 -148.98 -1.35 -7.32 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.06 0.82 7.68 -2.39 -0.02 0.80 16 32 H 0.05 0.83 6.63 -2.38 -0.02 0.82 16 33 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.79 7.68 -2.38 -0.02 0.77 16 36 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 37 H 0.05 0.68 6.28 -2.39 -0.02 0.66 16 38 H 0.08 2.03 5.83 -2.39 -0.01 2.01 16 39 H 0.09 1.52 6.07 -2.38 -0.01 1.50 16 40 H 0.41 7.30 6.16 -92.71 -0.57 6.72 16 41 H 0.07 2.30 7.65 -2.38 -0.02 2.28 16 42 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.07 2.54 7.92 -2.39 -0.02 2.52 16 46 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 47 H 0.05 2.60 4.42 -2.39 -0.01 2.59 16 48 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 49 H 0.05 2.04 8.09 -2.38 -0.02 2.02 16 50 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 51 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 52 H 0.10 1.00 5.78 -2.39 -0.01 0.98 16 53 H 0.14 0.89 8.14 -2.38 -0.02 0.87 16 54 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 Total: -1.00 -73.82 397.78 1.49 -72.33 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.23 Total: 16.41 kcal Atomic # 6 Polarization: 11.90 SS G_CDS: 7.44 Total: 19.34 kcal Atomic # 7 Polarization: -119.76 SS G_CDS: -6.46 Total: -126.22 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.41 Total: -31.32 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.69 Total: 49.46 kcal Total: -73.82 1.49 -72.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619205266.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.156 kcal (2) G-P(sol) polarization free energy of solvation -73.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds