Wall clock time and date at job start Sat Apr 11 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46882 * 2 1 4 4 C 1.53004 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.46819 * 180.02562 * 4 3 2 6 6 H 1.08995 * 109.47625 * 55.00473 * 5 4 3 7 7 C 1.53005 * 109.47181 * 294.99638 * 5 4 3 8 8 C 1.50707 * 109.46746 * 175.00092 * 5 4 3 9 9 O 1.21277 * 120.00032 * 9.22528 * 8 5 4 10 10 N 1.34775 * 119.99916 * 189.22117 * 8 5 4 11 11 C 1.44677 * 118.54965 * 183.70394 * 10 8 5 12 12 C 1.54949 * 109.52341 * 269.06204 * 11 10 8 13 13 C 1.47546 * 109.72904 * 290.51604 * 12 11 10 14 14 N 1.46269 * 114.37201 * 62.22271 * 13 12 11 15 15 C 1.46906 * 110.99946 * 148.54799 * 14 13 12 16 16 C 1.50703 * 109.46725 * 65.14854 * 15 14 13 17 17 O 1.21289 * 120.00135 * 354.80999 * 16 15 14 18 18 N 1.34780 * 119.99747 * 174.53737 * 16 15 14 19 19 C 1.37097 * 119.99866 * 180.27332 * 18 16 15 20 20 H 1.08002 * 119.99735 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00132 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99681 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00253 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47048 * 89.99967 * 23 21 19 25 25 H 1.48490 * 109.47059 * 210.00415 * 23 21 19 26 26 H 1.48505 * 109.46754 * 330.00364 * 23 21 19 27 27 C 1.44758 * 110.64399 * 272.24675 * 14 13 12 28 28 C 1.47782 * 118.54584 * 3.68320 * 10 8 5 29 29 H 1.08994 * 109.47551 * 59.99614 * 1 2 3 30 30 H 1.09006 * 109.46671 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.46898 * 299.99258 * 1 2 3 32 32 H 1.09002 * 109.47310 * 240.00710 * 2 1 3 33 33 H 1.09001 * 109.47733 * 119.99994 * 2 1 3 34 34 H 1.09000 * 109.47062 * 60.00108 * 3 2 1 35 35 H 1.09002 * 109.47659 * 300.00336 * 3 2 1 36 36 H 1.08995 * 109.47057 * 60.00686 * 4 3 2 37 37 H 1.08992 * 109.46832 * 300.00015 * 4 3 2 38 38 H 1.09003 * 109.46570 * 65.38996 * 7 5 4 39 39 H 1.08998 * 109.46821 * 185.38569 * 7 5 4 40 40 H 1.09000 * 109.47399 * 305.38884 * 7 5 4 41 41 H 1.08991 * 109.46439 * 149.04182 * 11 10 8 42 42 H 1.09004 * 109.44747 * 29.06813 * 11 10 8 43 43 H 1.08998 * 109.42789 * 170.44383 * 12 11 10 44 44 H 1.09000 * 109.38846 * 50.57022 * 12 11 10 45 45 H 1.08998 * 108.50647 * 300.95933 * 13 12 11 46 46 H 1.09004 * 108.37737 * 183.39632 * 13 12 11 47 47 H 1.09001 * 109.47381 * 305.15106 * 15 14 13 48 48 H 1.08990 * 109.47098 * 185.14445 * 15 14 13 49 49 H 0.96995 * 119.99813 * 0.27664 * 18 16 15 50 50 H 0.97000 * 120.00163 * 180.02562 * 22 21 19 51 51 H 1.08998 * 109.43776 * 214.22874 * 27 14 13 52 52 H 1.09010 * 109.43271 * 334.09675 * 27 14 13 53 53 H 1.08996 * 109.06554 * 258.66655 * 28 10 8 54 54 H 1.09002 * 109.06696 * 17.60142 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0798 2.8852 0.0000 6 1 3.6456 3.4237 0.8423 7 6 3.6745 3.5699 -1.3068 8 6 5.5819 2.8869 0.1232 9 8 6.1988 1.8466 0.0345 10 7 6.2395 4.0447 0.3318 11 6 7.6857 4.0223 0.3641 12 6 8.1678 3.7987 1.8196 13 6 7.8758 4.9963 2.6305 14 7 6.4530 5.3152 2.7455 15 6 6.1583 5.9492 4.0375 16 6 6.8517 7.2851 4.1112 17 8 7.6000 7.6300 3.2211 18 7 6.6362 8.0991 5.1637 19 6 7.2627 9.3168 5.2280 20 1 7.9286 9.6240 4.4352 21 6 7.0401 10.1562 6.3127 22 7 6.2294 9.7826 7.2771 23 14 7.8932 11.8157 6.4001 24 1 7.0437 12.8440 5.7471 25 1 8.1130 12.1850 7.8215 26 1 9.2010 11.7374 5.7010 27 6 6.0279 6.1558 1.6462 28 6 5.4514 5.2810 0.5171 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.6766 1.9564 -0.8899 36 1 3.9329 0.9290 -0.8909 37 1 3.9336 0.9287 0.8891 38 1 2.5887 3.6542 -1.3512 39 1 4.1182 4.5647 -1.3485 40 1 4.0279 2.9788 -2.1517 41 1 8.0720 4.9725 -0.0045 42 1 8.0503 3.2123 -0.2677 43 1 9.2418 3.6128 1.8213 44 1 7.6503 2.9384 2.2441 45 1 8.3865 5.8494 2.1840 46 1 8.2772 4.8396 3.6318 47 1 6.5142 5.3100 4.8455 48 1 5.0822 6.0926 4.1348 49 1 6.0378 7.8232 5.8755 50 1 6.0737 10.3687 8.0342 51 1 5.2625 6.8491 1.9947 52 1 6.8818 6.7188 1.2690 53 1 5.4579 5.8500 -0.4126 54 1 4.4234 5.0146 0.7628 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195718146.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:34 Heat of formation + Delta-G solvation = -102.900485 kcal Electronic energy + Delta-G solvation = -30987.426632 eV Core-core repulsion = 26957.720935 eV Total energy + Delta-G solvation = -4029.705696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.63150 -40.61003 -38.66019 -37.24166 -36.23938 -35.54591 -34.64305 -33.50205 -33.29955 -30.49168 -29.56277 -27.97394 -27.11157 -25.92959 -25.69407 -23.84698 -22.37094 -22.02865 -21.41690 -20.91808 -19.89724 -19.50265 -18.12230 -17.91128 -17.39420 -16.95272 -16.60039 -16.38037 -16.24172 -15.92713 -15.58807 -15.52511 -15.37516 -14.87804 -14.68255 -14.45232 -14.30872 -14.05955 -13.78169 -13.71377 -13.54729 -13.43018 -13.23219 -12.99896 -12.92915 -12.76441 -12.48968 -12.44385 -12.33313 -12.23797 -12.14334 -12.05718 -11.88691 -11.81324 -11.70863 -11.65741 -11.45399 -11.40684 -11.28133 -10.86343 -10.52784 -10.01969 -9.53141 -9.14996 -8.47474 -5.96922 1.35039 1.39960 1.51731 1.73578 2.01489 2.13230 2.27490 2.93371 3.19219 3.23989 3.53856 3.82255 3.86400 3.99781 4.04775 4.07382 4.14744 4.26531 4.26659 4.34354 4.35373 4.40522 4.48484 4.54717 4.62617 4.65640 4.70619 4.73814 4.76554 4.81603 4.85805 4.89922 4.91743 4.98206 5.02918 5.07710 5.10166 5.11922 5.16284 5.26945 5.33343 5.35351 5.39525 5.42453 5.53025 5.58253 5.71697 5.90519 6.03814 6.15186 6.48295 6.57435 7.10504 7.29892 7.54446 8.08270 8.68160 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016068 B = 0.002324 C = 0.002153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.163625 B =12046.366822 C =13002.926505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.093 4.093 5 C -0.107 4.107 6 H 0.110 0.890 7 C -0.142 4.142 8 C 0.512 3.488 9 O -0.588 6.588 10 N -0.590 5.590 11 C 0.120 3.880 12 C -0.118 4.118 13 C 0.063 3.937 14 N -0.498 5.498 15 C 0.053 3.947 16 C 0.409 3.591 17 O -0.623 6.623 18 N -0.570 5.570 19 C -0.331 4.331 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.918 5.918 23 Si 0.990 3.010 24 H -0.270 1.270 25 H -0.273 1.273 26 H -0.275 1.275 27 C 0.047 3.953 28 C 0.119 3.881 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.055 0.945 37 H 0.046 0.954 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.055 0.945 45 H 0.036 0.964 46 H 0.046 0.954 47 H 0.101 0.899 48 H 0.115 0.885 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.074 0.926 52 H 0.039 0.961 53 H 0.086 0.914 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.275 -13.870 -14.030 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.151 4.151 4 C -0.131 4.131 5 C -0.128 4.128 6 H 0.128 0.872 7 C -0.199 4.199 8 C 0.302 3.698 9 O -0.469 6.469 10 N -0.321 5.321 11 C -0.004 4.004 12 C -0.157 4.157 13 C -0.065 4.065 14 N -0.220 5.220 15 C -0.079 4.079 16 C 0.196 3.804 17 O -0.511 6.511 18 N -0.207 5.207 19 C -0.460 4.460 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.200 1.200 27 C -0.083 4.083 28 C -0.003 4.003 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.104 0.896 44 H 0.074 0.926 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.120 0.880 48 H 0.133 0.867 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.057 0.943 53 H 0.104 0.896 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.759 -14.493 -14.512 22.713 hybrid contribution 1.059 1.579 1.061 2.177 sum -8.701 -12.914 -13.451 20.577 Atomic orbital electron populations 1.21765 0.95117 1.01823 1.02118 1.21535 0.96411 0.96898 1.01660 1.21640 0.93422 0.97095 1.02968 1.21333 0.96106 0.94005 1.01674 1.21386 0.89888 0.99472 1.02037 0.87241 1.21876 1.03449 1.00412 0.94210 1.21273 0.91360 0.82537 0.74664 1.90632 1.70608 1.32686 1.52966 1.47666 1.06235 1.08411 1.69742 1.21357 0.80507 1.02100 0.96397 1.21249 1.01331 0.97392 0.95726 1.20909 0.88308 0.97583 0.99693 1.61474 1.17871 1.41607 1.01056 1.22306 1.01719 0.90322 0.93526 1.22050 0.86177 0.88914 0.83268 1.90480 1.42631 1.77472 1.40515 1.42094 1.41782 1.16081 1.20726 1.19621 1.25261 0.94439 1.06722 0.90390 1.26019 0.97546 1.03043 0.94693 1.69667 1.36623 1.39263 1.10362 0.84967 0.78342 0.77550 0.77729 1.19556 1.19750 1.19972 1.22316 1.00219 0.93872 0.91845 1.22368 0.95827 0.84485 0.97622 0.92213 0.92653 0.92607 0.92311 0.92794 0.91423 0.90470 0.92629 0.93497 0.89209 0.91302 0.92882 0.90603 0.90635 0.89565 0.92574 0.94577 0.93583 0.88042 0.86743 0.77048 0.91319 0.90778 0.94260 0.89604 0.87658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.91 71.98 0.71 -0.98 16 2 C -0.13 -1.72 5.93 30.59 0.18 -1.54 16 3 C -0.11 -1.52 4.97 30.60 0.15 -1.37 16 4 C -0.09 -1.72 3.98 30.60 0.12 -1.60 16 5 C -0.11 -1.91 1.87 -11.54 -0.02 -1.93 16 6 H 0.11 1.72 6.71 -2.39 -0.02 1.70 16 7 C -0.14 -1.87 8.51 71.98 0.61 -1.25 16 8 C 0.51 13.03 6.90 87.66 0.60 13.64 16 9 O -0.59 -19.43 15.46 -3.02 -0.05 -19.48 16 10 N -0.59 -14.16 2.53 -817.15 -2.07 -16.24 16 11 C 0.12 3.08 5.41 87.39 0.47 3.55 16 12 C -0.12 -3.23 6.02 29.56 0.18 -3.06 16 13 C 0.06 2.02 4.03 84.72 0.34 2.36 16 14 N -0.50 -15.02 4.37 -916.49 -4.01 -19.03 16 15 C 0.05 1.71 5.49 85.56 0.47 2.18 16 16 C 0.41 17.94 7.06 87.66 0.62 18.56 16 17 O -0.62 -31.08 12.14 -3.06 -0.04 -31.12 16 18 N -0.57 -27.86 5.29 -306.98 -1.62 -29.48 16 19 C -0.33 -18.10 9.68 84.04 0.81 -17.29 16 20 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 21 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 22 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 23 Si 0.99 42.03 29.55 68.60 2.03 44.06 16 24 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 27 C 0.05 1.32 4.24 87.05 0.37 1.69 16 28 C 0.12 2.43 4.98 86.48 0.43 2.86 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.84 6.69 -2.39 -0.02 0.83 16 36 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 37 H 0.05 1.05 8.09 -2.39 -0.02 1.03 16 38 H 0.09 0.82 6.83 -2.39 -0.02 0.80 16 39 H 0.07 0.84 5.94 -2.39 -0.01 0.83 16 40 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 1.86 8.09 -2.39 -0.02 1.84 16 42 H 0.08 2.00 7.30 -2.39 -0.02 1.98 16 43 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.04 1.35 5.86 -2.39 -0.01 1.34 16 46 H 0.05 1.55 7.53 -2.38 -0.02 1.53 16 47 H 0.10 3.07 7.89 -2.39 -0.02 3.05 16 48 H 0.11 3.16 8.09 -2.39 -0.02 3.14 16 49 H 0.40 18.55 7.90 -92.71 -0.73 17.82 16 50 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 51 H 0.07 2.12 7.45 -2.39 -0.02 2.11 16 52 H 0.04 1.34 6.18 -2.38 -0.01 1.33 16 53 H 0.09 1.43 7.61 -2.39 -0.02 1.41 16 54 H 0.11 1.71 5.34 -2.39 -0.01 1.69 16 Total: -1.00 -67.11 408.61 1.20 -65.91 By element: Atomic # 1 Polarization: 37.81 SS G_CDS: 0.15 Total: 37.96 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 6.53 Total: 15.62 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -7.42 Total: -112.95 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.08 Total: -50.60 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -67.11 1.20 -65.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195718146.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.991 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds