Wall clock time and date at job start Sat Apr 11 2020 05:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47247 * 2 1 4 4 C 1.52998 * 109.47067 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47157 * 179.97438 * 4 3 2 6 6 H 1.08997 * 109.47500 * 305.00439 * 5 4 3 7 7 C 1.53006 * 109.46912 * 65.00026 * 5 4 3 8 8 C 1.50699 * 109.47493 * 185.00034 * 5 4 3 9 9 O 1.21281 * 119.99436 * 347.07269 * 8 5 4 10 10 N 1.34773 * 120.00256 * 167.07152 * 8 5 4 11 11 C 1.47612 * 118.74817 * 353.69405 * 10 8 5 12 12 C 1.53803 * 111.25691 * 138.34593 * 11 10 8 13 13 C 1.51172 * 109.65430 * 319.85289 * 12 11 10 14 14 N 1.46193 * 109.04359 * 92.49324 * 13 12 11 15 15 C 1.46904 * 110.99816 * 144.77246 * 14 13 12 16 16 C 1.50704 * 109.47081 * 197.07749 * 15 14 13 17 17 O 1.21298 * 119.99959 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00073 * 179.97438 * 16 15 14 19 19 C 1.37094 * 120.00027 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99860 * 0.02562 * 19 18 16 21 21 C 1.38942 * 120.00144 * 180.02562 * 19 18 16 22 22 N 1.31409 * 120.00193 * 180.02562 * 21 19 18 23 23 Si 1.86807 * 119.99885 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47083 * 89.99834 * 23 21 19 25 25 H 1.48500 * 109.46816 * 209.99826 * 23 21 19 26 26 H 1.48496 * 109.47076 * 329.99841 * 23 21 19 27 27 C 1.41444 * 116.34674 * 272.97409 * 14 13 12 28 28 C 1.44887 * 118.74925 * 173.67400 * 10 8 5 29 29 H 1.09000 * 109.46751 * 60.00107 * 1 2 3 30 30 H 1.08997 * 109.47111 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47279 * 300.00526 * 1 2 3 32 32 H 1.08996 * 109.47279 * 239.99474 * 2 1 3 33 33 H 1.09000 * 109.46779 * 119.99336 * 2 1 3 34 34 H 1.09002 * 109.47033 * 59.99805 * 3 2 1 35 35 H 1.09000 * 109.47158 * 299.99644 * 3 2 1 36 36 H 1.08996 * 109.47089 * 59.99700 * 4 3 2 37 37 H 1.09000 * 109.47121 * 300.00010 * 4 3 2 38 38 H 1.08996 * 109.47358 * 54.12290 * 7 5 4 39 39 H 1.09008 * 109.46710 * 174.12427 * 7 5 4 40 40 H 1.08999 * 109.47071 * 294.12131 * 7 5 4 41 41 H 1.08994 * 109.11757 * 258.79217 * 11 10 8 42 42 H 1.09007 * 109.11178 * 17.91326 * 11 10 8 43 43 H 1.09000 * 109.44070 * 79.97849 * 12 11 10 44 44 H 1.08996 * 109.44655 * 199.88391 * 12 11 10 45 45 H 1.08997 * 109.55627 * 332.62459 * 13 12 11 46 46 H 1.09004 * 109.62561 * 212.40079 * 13 12 11 47 47 H 1.09002 * 109.47115 * 317.07756 * 15 14 13 48 48 H 1.09001 * 109.46804 * 77.08171 * 15 14 13 49 49 H 0.96998 * 119.99801 * 0.02562 * 18 16 15 50 50 H 0.97002 * 120.00032 * 180.02562 * 22 21 19 51 51 H 1.09006 * 109.38241 * 303.32554 * 27 14 13 52 52 H 1.08997 * 109.38854 * 183.64013 * 27 14 13 53 53 H 1.09003 * 109.43215 * 29.79246 * 28 10 8 54 54 H 1.08993 * 109.43476 * 149.65709 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0801 2.8849 0.0000 6 1 3.6458 3.4236 -0.8422 7 6 3.6747 3.5698 1.3068 8 6 5.5820 2.8867 -0.1232 9 8 6.2043 1.8574 0.0322 10 7 6.2336 4.0320 -0.4061 11 6 5.4442 5.2369 -0.7285 12 6 6.0353 6.4873 -0.0556 13 6 6.4913 6.1440 1.3442 14 7 7.9025 5.7641 1.3065 15 6 8.6011 6.2132 2.5182 16 6 10.0887 6.1908 2.2779 17 8 10.5241 5.8360 1.2028 18 7 10.9353 6.5658 3.2572 19 6 12.2885 6.5459 3.0385 20 1 12.6762 6.2300 2.0811 21 6 13.1613 6.9321 4.0482 22 7 14.4584 6.9134 3.8384 23 14 12.4908 7.4777 5.7043 24 1 12.3682 6.3004 6.6009 25 1 13.4164 8.4679 6.3110 26 1 11.1550 8.0986 5.5172 27 6 8.1794 4.4035 1.0366 28 6 7.6823 4.0338 -0.3817 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 3.9337 0.9285 -0.8891 37 1 3.9330 0.9288 0.8909 38 1 4.0205 2.9741 2.1516 39 1 4.1256 4.5612 1.3525 40 1 2.5894 3.6620 1.3473 41 1 5.4389 5.3817 -1.8087 42 1 4.4202 5.0959 -0.3824 43 1 6.8848 6.8451 -0.6375 44 1 5.2752 7.2669 -0.0071 45 1 5.9000 5.3120 1.7267 46 1 6.3643 7.0103 1.9934 47 1 8.2879 7.2281 2.7631 48 1 8.3568 5.5477 3.3462 49 1 10.5871 6.8499 4.1169 50 1 15.0677 7.1827 4.5435 51 1 7.6727 3.7785 1.7720 52 1 9.2542 4.2337 1.0989 53 1 8.0507 3.0433 -0.6485 54 1 8.0561 4.7644 -1.0990 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001195718148.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:38 Heat of formation + Delta-G solvation = -94.457827 kcal Electronic energy + Delta-G solvation = -30845.296750 eV Core-core repulsion = 26815.957155 eV Total energy + Delta-G solvation = -4029.339595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.75174 -40.52870 -38.92126 -37.30196 -36.42246 -35.78876 -34.39901 -33.74919 -33.43136 -30.78523 -29.48598 -28.16375 -27.01034 -26.20146 -25.50970 -23.95522 -22.39956 -21.65472 -21.56785 -21.26401 -20.28573 -19.48563 -18.30176 -17.89169 -17.22208 -16.87957 -16.80749 -16.57227 -16.38672 -16.13353 -15.68964 -15.49424 -15.18961 -14.97424 -14.64070 -14.55258 -14.33855 -14.24988 -14.09933 -14.03245 -13.58095 -13.44749 -13.15467 -13.10673 -12.93790 -12.71135 -12.62188 -12.54389 -12.45341 -12.36827 -12.15870 -11.98283 -11.89625 -11.88723 -11.78172 -11.62820 -11.51045 -11.46718 -11.32589 -10.62461 -10.36276 -10.22658 -9.64563 -9.07987 -8.40947 -6.01457 1.29135 1.35069 1.43780 1.59965 1.96562 2.03634 2.22817 2.62412 3.15233 3.20657 3.46596 3.73579 3.86726 3.93623 3.98361 4.12714 4.13245 4.19336 4.21701 4.26317 4.28049 4.34173 4.36614 4.44876 4.51096 4.54161 4.60865 4.64113 4.76911 4.80798 4.84310 4.86755 4.88944 4.93402 5.00086 5.01721 5.05009 5.10099 5.14691 5.23825 5.27965 5.37846 5.38738 5.48673 5.53947 5.53992 5.66582 5.92288 6.10409 6.35318 6.54276 6.60746 6.89326 7.18208 7.40821 7.98388 8.76775 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021601 B = 0.002137 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.904146 B =13098.905739 C =13269.916314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C -0.111 4.111 4 C -0.098 4.098 5 C -0.102 4.102 6 H 0.123 0.877 7 C -0.144 4.144 8 C 0.502 3.498 9 O -0.592 6.592 10 N -0.603 5.603 11 C 0.097 3.903 12 C -0.128 4.128 13 C 0.068 3.932 14 N -0.553 5.553 15 C 0.062 3.938 16 C 0.449 3.551 17 O -0.604 6.604 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.936 5.936 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.229 1.229 27 C 0.076 3.924 28 C 0.130 3.870 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.048 0.952 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.115 0.885 43 H 0.062 0.938 44 H 0.118 0.882 45 H 0.044 0.956 46 H 0.095 0.905 47 H 0.127 0.873 48 H 0.068 0.932 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.005 0.995 52 H 0.064 0.936 53 H 0.063 0.937 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.366 -2.294 -3.773 34.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.168 4.168 3 C -0.148 4.148 4 C -0.136 4.136 5 C -0.123 4.123 6 H 0.140 0.860 7 C -0.201 4.201 8 C 0.292 3.708 9 O -0.472 6.472 10 N -0.335 5.335 11 C -0.024 4.024 12 C -0.167 4.167 13 C -0.058 4.058 14 N -0.278 5.278 15 C -0.068 4.068 16 C 0.236 3.764 17 O -0.488 6.488 18 N -0.235 5.235 19 C -0.455 4.455 20 H 0.073 0.927 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.785 3.215 24 H -0.185 1.185 25 H -0.200 1.200 26 H -0.152 1.152 27 C -0.055 4.055 28 C 0.006 3.994 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.133 0.867 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.062 0.938 46 H 0.113 0.887 47 H 0.145 0.855 48 H 0.086 0.914 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.023 0.977 52 H 0.082 0.918 53 H 0.081 0.919 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -33.381 -2.786 -4.745 33.831 hybrid contribution 1.063 -0.560 1.368 1.820 sum -32.318 -3.347 -3.377 32.666 Atomic orbital electron populations 1.21754 0.94883 1.01810 1.02274 1.21552 0.96604 0.97094 1.01501 1.21626 0.92871 0.97005 1.03321 1.21379 0.96558 0.94130 1.01529 1.21402 0.88868 0.99554 1.02481 0.85957 1.21938 1.03854 1.00326 0.94009 1.21623 0.91909 0.82470 0.74808 1.90672 1.70676 1.33766 1.52097 1.48027 1.05899 1.11181 1.68395 1.22457 0.95791 0.83188 1.00916 1.21885 1.02045 0.97421 0.95317 1.21777 0.84626 1.00729 0.98709 1.57773 1.13543 1.19384 1.37119 1.21832 0.89302 1.03594 0.92115 1.21011 0.89663 0.81372 0.84306 1.90518 1.79525 1.51783 1.26927 1.42051 1.05508 1.61523 1.14426 1.18987 0.81495 1.44159 1.00886 0.92746 1.26113 0.95066 0.96944 1.03350 1.69808 1.03407 1.48401 1.36020 0.85368 0.80015 0.79224 0.76930 1.18527 1.19963 1.15202 1.21468 1.00533 0.87313 0.96158 1.21216 0.80526 1.01274 0.96411 0.92169 0.92859 0.92236 0.92730 0.92868 0.90443 0.90556 0.93328 0.93416 0.93827 0.90864 0.88334 0.90316 0.86686 0.91897 0.86412 0.93782 0.88668 0.85532 0.91428 0.77601 0.91216 0.97724 0.91811 0.91889 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.64 16 2 C -0.13 -1.53 5.93 30.60 0.18 -1.35 16 3 C -0.11 -1.16 4.97 30.60 0.15 -1.01 16 4 C -0.10 -1.63 3.99 30.59 0.12 -1.51 16 5 C -0.10 -1.51 1.85 -11.54 -0.02 -1.53 16 6 H 0.12 1.10 7.05 -2.39 -0.02 1.09 16 7 C -0.14 -1.58 8.34 71.98 0.60 -0.98 16 8 C 0.50 12.49 6.85 87.66 0.60 13.09 16 9 O -0.59 -20.86 15.47 -3.03 -0.05 -20.91 16 10 N -0.60 -13.75 2.18 -817.90 -1.79 -15.54 16 11 C 0.10 1.29 5.40 86.44 0.47 1.76 16 12 C -0.13 -1.83 5.77 30.27 0.17 -1.65 16 13 C 0.07 1.26 5.32 85.84 0.46 1.72 16 14 N -0.55 -16.33 3.60 -916.39 -3.30 -19.63 16 15 C 0.06 1.92 5.44 85.56 0.47 2.38 16 16 C 0.45 20.41 7.37 87.66 0.65 21.05 16 17 O -0.60 -33.43 13.97 -3.08 -0.04 -33.47 16 18 N -0.59 -28.23 5.09 -306.98 -1.56 -29.79 16 19 C -0.33 -19.31 10.16 84.04 0.85 -18.46 16 20 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 21 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 22 N -0.94 -57.09 13.96 21.66 0.30 -56.79 16 23 Si 0.96 39.15 27.74 68.60 1.90 41.06 16 24 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.23 -7.72 6.52 99.48 0.65 -7.07 16 27 C 0.08 2.60 5.01 87.90 0.44 3.05 16 28 C 0.13 3.99 5.56 87.29 0.49 4.48 16 29 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.08 0.64 6.70 -2.39 -0.02 0.62 16 35 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 36 H 0.05 0.98 8.13 -2.39 -0.02 0.96 16 37 H 0.05 1.01 8.10 -2.39 -0.02 0.99 16 38 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.70 4.76 -2.38 -0.01 0.69 16 40 H 0.10 0.56 6.86 -2.39 -0.02 0.54 16 41 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.12 0.83 4.38 -2.38 -0.01 0.82 16 43 H 0.06 1.26 7.98 -2.39 -0.02 1.24 16 44 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 45 H 0.04 0.81 5.70 -2.39 -0.01 0.80 16 46 H 0.10 1.36 7.36 -2.38 -0.02 1.34 16 47 H 0.13 3.00 7.57 -2.39 -0.02 2.99 16 48 H 0.07 1.86 8.11 -2.39 -0.02 1.84 16 49 H 0.39 15.30 5.76 -92.71 -0.53 14.76 16 50 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 51 H 0.00 0.17 8.12 -2.38 -0.02 0.15 16 52 H 0.06 2.80 5.62 -2.39 -0.01 2.79 16 53 H 0.06 2.20 7.20 -2.39 -0.02 2.18 16 54 H 0.08 2.54 8.11 -2.39 -0.02 2.52 16 Total: -1.00 -83.98 406.60 2.57 -81.41 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.29 Total: 33.71 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 6.81 Total: 19.95 kcal Atomic # 7 Polarization: -115.40 SS G_CDS: -6.35 Total: -121.75 kcal Atomic # 8 Polarization: -54.29 SS G_CDS: -0.09 Total: -54.38 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.90 Total: 41.06 kcal Total: -83.98 2.57 -81.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195718148.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.047 kcal (2) G-P(sol) polarization free energy of solvation -83.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds