Wall clock time and date at job start Sat Apr 11 2020 05:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47575 * 2 1 4 4 C 1.52997 * 109.47575 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47111 * 179.97438 * 4 3 2 6 6 H 1.08999 * 109.46809 * 304.99879 * 5 4 3 7 7 C 1.52994 * 109.46911 * 64.99894 * 5 4 3 8 8 C 1.50699 * 109.47083 * 184.99947 * 5 4 3 9 9 O 1.21281 * 120.00022 * 263.41028 * 8 5 4 10 10 N 1.34781 * 119.99800 * 83.41048 * 8 5 4 11 11 C 1.46925 * 120.63182 * 4.76233 * 10 8 5 12 12 C 1.52761 * 109.00987 * 233.58584 * 11 10 8 13 13 C 1.53041 * 109.38316 * 305.58758 * 12 11 10 14 14 N 1.46898 * 109.46106 * 181.25779 * 13 12 11 15 15 C 1.46907 * 110.99650 * 84.93702 * 14 13 12 16 16 C 1.50699 * 109.47042 * 180.02562 * 15 14 13 17 17 O 1.21297 * 119.99826 * 359.97438 * 16 15 14 18 18 N 1.34771 * 119.99962 * 179.97438 * 16 15 14 19 19 C 1.37099 * 120.00017 * 179.97438 * 18 16 15 20 20 H 1.07999 * 120.00199 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00091 * 179.97438 * 19 18 16 22 22 N 1.31420 * 120.00015 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00197 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47106 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47175 * 120.00144 * 23 21 19 26 26 H 1.48500 * 109.47088 * 240.00007 * 23 21 19 27 27 C 1.53041 * 109.53580 * 61.24003 * 13 12 11 28 28 C 1.46928 * 120.62712 * 185.04706 * 10 8 5 29 29 H 1.08998 * 109.46872 * 60.00336 * 1 2 3 30 30 H 1.09001 * 109.47083 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47226 * 300.00196 * 1 2 3 32 32 H 1.09004 * 109.47036 * 240.00006 * 2 1 3 33 33 H 1.09000 * 109.47341 * 120.00487 * 2 1 3 34 34 H 1.08996 * 109.47003 * 59.99668 * 3 2 1 35 35 H 1.09007 * 109.46953 * 300.00308 * 3 2 1 36 36 H 1.09004 * 109.47036 * 60.00006 * 4 3 2 37 37 H 1.08991 * 109.46982 * 300.00013 * 4 3 2 38 38 H 1.08996 * 109.47540 * 293.91364 * 7 5 4 39 39 H 1.09009 * 109.47047 * 173.91551 * 7 5 4 40 40 H 1.08996 * 109.47242 * 53.91944 * 7 5 4 41 41 H 1.08999 * 109.58467 * 353.42111 * 11 10 8 42 42 H 1.09000 * 109.58217 * 113.84709 * 11 10 8 43 43 H 1.08996 * 109.56183 * 185.55608 * 12 11 10 44 44 H 1.08995 * 109.35982 * 65.49875 * 12 11 10 45 45 H 1.09004 * 109.46354 * 301.22201 * 13 12 11 46 46 H 1.00899 * 111.00232 * 320.98508 * 14 13 12 47 47 H 1.09004 * 109.46488 * 299.99754 * 15 14 13 48 48 H 1.08994 * 109.47088 * 60.00071 * 15 14 13 49 49 H 0.97003 * 120.00326 * 359.97438 * 18 16 15 50 50 H 0.96995 * 119.99776 * 179.97438 * 22 21 19 51 51 H 1.09004 * 109.49692 * 178.68050 * 27 13 12 52 52 H 1.08997 * 109.52723 * 58.60552 * 27 13 12 53 53 H 1.09002 * 109.58619 * 246.15248 * 28 10 8 54 54 H 1.08996 * 109.58873 * 6.43997 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6458 3.4234 -0.8423 7 6 3.6747 3.5697 1.3067 8 6 5.5820 2.8867 -0.1232 9 8 6.2718 2.9782 0.8701 10 7 6.1587 2.7866 -1.3373 11 6 5.3394 2.7798 -2.5569 12 6 5.6936 1.5476 -3.3875 13 6 7.2023 1.5240 -3.6432 14 7 7.5409 0.3560 -4.4672 15 6 7.3655 0.6508 -5.8956 16 6 7.7207 -0.5681 -6.7074 17 8 8.0847 -1.5825 -6.1508 18 7 7.6340 -0.5311 -8.0519 19 6 7.9577 -1.6398 -8.7905 20 1 8.2818 -2.5431 -8.2949 21 6 7.8678 -1.6018 -10.1765 22 7 7.4730 -0.5029 -10.7795 23 14 8.3081 -3.1127 -11.1829 24 1 8.7205 -4.2110 -10.2724 25 1 7.1270 -3.5421 -11.9739 26 1 9.4275 -2.7860 -12.1024 27 6 7.9464 1.4392 -2.3085 28 6 7.6181 2.6758 -1.4659 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9337 0.9284 -0.8891 37 1 3.9329 0.9288 0.8908 38 1 2.5896 3.6653 1.3455 39 1 4.1285 4.5597 1.3541 40 1 4.0173 2.9722 2.1515 41 1 4.2837 2.7462 -2.2877 42 1 5.5421 3.6794 -3.1381 43 1 5.1639 1.5845 -4.3393 44 1 5.4028 0.6492 -2.8432 45 1 7.4965 2.4343 -4.1657 46 1 6.9967 -0.4488 -4.1946 47 1 6.3273 0.9235 -6.0854 48 1 8.0161 1.4783 -6.1783 49 1 7.3426 0.2800 -8.4970 50 1 7.4106 -0.4763 -11.7471 51 1 9.0200 1.3988 -2.4924 52 1 7.6349 0.5418 -1.7741 53 1 8.0103 3.5667 -1.9564 54 1 8.0656 2.5761 -0.4771 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200382351.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:45 Heat of formation + Delta-G solvation = -122.656043 kcal Electronic energy + Delta-G solvation = -30005.485464 eV Core-core repulsion = 25974.923103 eV Total energy + Delta-G solvation = -4030.562362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.51495 -40.20803 -38.99352 -37.37143 -36.33085 -35.74473 -34.32341 -33.28331 -32.36305 -31.90012 -29.50361 -28.41262 -26.72221 -25.88853 -24.47001 -24.31936 -22.96851 -21.81180 -21.54322 -21.01181 -19.94902 -19.61538 -18.51643 -17.69803 -16.91191 -16.84656 -16.50943 -16.42091 -16.17951 -16.07662 -15.47808 -15.41633 -15.20135 -15.17809 -14.82533 -14.44184 -14.33484 -14.09688 -13.95081 -13.61112 -13.52579 -13.50617 -13.36461 -13.15839 -12.98070 -12.85429 -12.62677 -12.53245 -12.40242 -12.23130 -12.20423 -12.11829 -12.00129 -11.89664 -11.78242 -11.57713 -11.52317 -11.48992 -11.31864 -10.62047 -10.33933 -10.00859 -9.71472 -9.24858 -8.46740 -5.95069 1.36521 1.42170 1.55929 1.57285 2.00214 2.06156 2.29298 2.91266 3.20828 3.43303 3.50916 3.73543 3.80216 3.84555 3.96556 4.05140 4.11831 4.19270 4.24677 4.32353 4.33594 4.35895 4.42376 4.48094 4.49585 4.58298 4.61324 4.67069 4.73802 4.78474 4.79520 4.83976 4.90000 4.95066 4.97113 5.02654 5.05117 5.10375 5.16133 5.21721 5.26976 5.30173 5.36271 5.41683 5.45790 5.52718 5.56516 5.92395 6.14745 6.38154 6.42316 6.60908 7.13479 7.15264 7.57278 8.12950 8.70776 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013240 B = 0.002086 C = 0.001884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.297399 B =13418.380461 C =14856.452576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C -0.112 4.112 4 C -0.104 4.104 5 C -0.106 4.106 6 H 0.119 0.881 7 C -0.131 4.131 8 C 0.513 3.487 9 O -0.588 6.588 10 N -0.609 5.609 11 C 0.109 3.891 12 C -0.161 4.161 13 C 0.091 3.909 14 N -0.680 5.680 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.626 6.626 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.077 0.923 21 C -0.013 4.013 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 C -0.112 4.112 28 C 0.115 3.885 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.052 0.948 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.109 0.891 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.062 0.938 45 H 0.091 0.909 46 H 0.343 0.657 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.077 0.923 52 H 0.051 0.949 53 H 0.083 0.917 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.987 12.214 18.673 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.127 4.127 6 H 0.137 0.863 7 C -0.189 4.189 8 C 0.302 3.698 9 O -0.468 6.468 10 N -0.342 5.342 11 C -0.013 4.013 12 C -0.201 4.201 13 C -0.018 4.018 14 N -0.311 5.311 15 C -0.065 4.065 16 C 0.224 3.776 17 O -0.513 6.513 18 N -0.211 5.211 19 C -0.462 4.462 20 H 0.095 0.905 21 C -0.212 4.212 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.197 1.197 27 C -0.151 4.151 28 C -0.008 4.008 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.106 0.894 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.127 0.873 42 H 0.108 0.892 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.109 0.891 46 H 0.161 0.839 47 H 0.090 0.910 48 H 0.122 0.878 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.096 0.904 52 H 0.069 0.931 53 H 0.101 0.899 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -12.718 11.766 19.325 25.955 hybrid contribution -0.404 -0.657 -0.928 1.207 sum -13.122 11.109 18.397 25.180 Atomic orbital electron populations 1.21764 0.95281 1.01727 1.02178 1.21545 0.96379 0.97051 1.01680 1.21615 0.93019 0.96931 1.03332 1.21519 0.97137 0.93362 1.02205 1.21428 0.89596 0.99507 1.02128 0.86332 1.21656 1.02302 0.99737 0.95177 1.21322 0.91853 0.74463 0.82121 1.90658 1.66299 1.51838 1.38039 1.48285 1.07513 1.71838 1.06515 1.21863 0.96368 0.98532 0.84532 1.22571 0.97153 0.99160 1.01220 1.21639 0.93379 0.93436 0.93396 1.60149 1.62632 1.06862 1.01427 1.21556 1.01472 0.95006 0.88431 1.20981 0.82999 0.90877 0.82759 1.90500 1.53357 1.35861 1.71548 1.41937 1.59491 1.14446 1.05181 1.19672 1.43763 0.93413 0.89346 0.90530 1.26011 0.96697 1.01165 0.97367 1.69670 1.47259 1.28112 1.10980 0.84898 0.78288 0.77557 0.77765 1.19959 1.19488 1.19671 1.21782 1.01265 0.97376 0.94708 1.21559 0.80278 0.98231 1.00701 0.92304 0.93006 0.92310 0.92490 0.92665 0.90852 0.90443 0.91617 0.92896 0.89404 0.93170 0.93480 0.87305 0.89192 0.89435 0.91888 0.89076 0.83856 0.91035 0.87814 0.76881 0.91296 0.90418 0.93056 0.89860 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.91 71.98 0.71 -0.82 16 2 C -0.13 -1.48 5.93 30.59 0.18 -1.29 16 3 C -0.11 -1.06 4.97 30.59 0.15 -0.91 16 4 C -0.10 -1.36 4.49 30.59 0.14 -1.22 16 5 C -0.11 -1.43 1.87 -11.54 -0.02 -1.45 16 6 H 0.12 0.99 6.36 -2.39 -0.02 0.97 16 7 C -0.13 -1.80 8.20 71.98 0.59 -1.21 16 8 C 0.51 10.71 6.82 87.66 0.60 11.30 16 9 O -0.59 -17.42 15.63 -3.03 -0.05 -17.47 16 10 N -0.61 -10.75 2.98 -819.73 -2.44 -13.19 16 11 C 0.11 1.30 6.08 86.22 0.52 1.83 16 12 C -0.16 -2.52 5.32 30.53 0.16 -2.35 16 13 C 0.09 1.86 2.43 44.94 0.11 1.97 16 14 N -0.68 -20.05 5.87 -495.42 -2.91 -22.96 16 15 C 0.07 2.15 5.96 85.56 0.51 2.66 16 16 C 0.44 20.25 7.82 87.66 0.69 20.94 16 17 O -0.63 -34.51 15.78 -3.08 -0.05 -34.56 16 18 N -0.57 -28.81 5.29 -306.99 -1.62 -30.43 16 19 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 20 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 21 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 22 N -0.92 -48.80 13.05 21.66 0.28 -48.52 16 23 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 27 C -0.11 -2.38 5.69 30.67 0.17 -2.21 16 28 C 0.12 2.23 6.42 86.36 0.55 2.78 16 29 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.07 0.63 6.70 -2.39 -0.02 0.61 16 35 H 0.08 0.57 8.14 -2.38 -0.02 0.55 16 36 H 0.07 0.90 7.79 -2.38 -0.02 0.88 16 37 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.09 0.76 6.87 -2.39 -0.02 0.75 16 39 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.05 0.82 8.07 -2.39 -0.02 0.80 16 41 H 0.11 0.86 5.19 -2.39 -0.01 0.85 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.09 1.26 7.42 -2.39 -0.02 1.24 16 44 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.09 1.68 7.80 -2.39 -0.02 1.66 16 46 H 0.34 10.93 8.18 -89.69 -0.73 10.19 16 47 H 0.07 1.89 7.41 -2.38 -0.02 1.88 16 48 H 0.10 2.96 8.05 -2.39 -0.02 2.94 16 49 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 50 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 51 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 52 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 53 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 54 H 0.07 1.74 7.03 -2.39 -0.02 1.72 16 Total: -1.00 -72.35 422.66 1.02 -71.34 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: -0.58 Total: 39.26 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: 6.35 Total: 11.90 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -6.69 Total: -115.10 kcal Atomic # 8 Polarization: -51.93 SS G_CDS: -0.10 Total: -52.03 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -72.35 1.02 -71.34 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200382351.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.319 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds