Wall clock time and date at job start Sat Apr 11 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47261 * 2 1 4 4 C 1.53001 * 109.46803 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46842 * 180.02562 * 4 3 2 6 6 H 1.09000 * 109.46652 * 304.99937 * 5 4 3 7 7 C 1.52989 * 109.47145 * 65.00200 * 5 4 3 8 8 C 1.50701 * 109.47137 * 185.00556 * 5 4 3 9 9 O 1.21280 * 119.99611 * 263.36227 * 8 5 4 10 10 N 1.34774 * 120.00484 * 83.35920 * 8 5 4 11 11 C 1.46928 * 120.62943 * 5.03539 * 10 8 5 12 12 C 1.53193 * 108.77762 * 233.58673 * 11 10 8 13 13 C 1.53043 * 109.31063 * 305.36262 * 12 11 10 14 14 C 1.53043 * 109.53541 * 61.36510 * 13 12 11 15 15 H 1.08997 * 109.49447 * 58.61938 * 14 13 12 16 16 N 1.46903 * 109.49346 * 178.68398 * 14 13 12 17 17 C 1.46900 * 111.00111 * 274.99564 * 16 14 13 18 18 C 1.50693 * 109.47229 * 180.02562 * 17 16 14 19 19 O 1.21289 * 120.00415 * 0.02562 * 18 17 16 20 20 N 1.34779 * 120.00143 * 180.02562 * 18 17 16 21 21 C 1.37099 * 120.00282 * 180.02562 * 20 18 17 22 22 H 1.08000 * 119.99846 * 0.02562 * 21 20 18 23 23 C 1.38944 * 119.99919 * 180.02562 * 21 20 18 24 24 N 1.31410 * 120.00064 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00179 * 359.97438 * 23 21 20 26 26 H 1.48502 * 109.46892 * 90.00435 * 25 23 21 27 27 H 1.48510 * 109.47326 * 210.00040 * 25 23 21 28 28 H 1.48495 * 109.47432 * 330.00218 * 25 23 21 29 29 C 1.46925 * 120.63349 * 184.75517 * 10 8 5 30 30 H 1.09003 * 109.46818 * 300.00066 * 1 2 3 31 31 H 1.08996 * 109.46717 * 59.99587 * 1 2 3 32 32 H 1.08994 * 109.47316 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.46931 * 239.99494 * 2 1 3 34 34 H 1.09005 * 109.46549 * 120.00336 * 2 1 3 35 35 H 1.09003 * 109.47259 * 60.00203 * 3 2 1 36 36 H 1.08996 * 109.47068 * 299.99833 * 3 2 1 37 37 H 1.08998 * 109.47185 * 60.00505 * 4 3 2 38 38 H 1.08996 * 109.47363 * 299.99886 * 4 3 2 39 39 H 1.08996 * 109.47221 * 53.91317 * 7 5 4 40 40 H 1.09000 * 109.47125 * 293.91102 * 7 5 4 41 41 H 1.09005 * 109.47206 * 173.91295 * 7 5 4 42 42 H 1.08997 * 109.58669 * 353.37480 * 11 10 8 43 43 H 1.09000 * 109.58788 * 113.79173 * 11 10 8 44 44 H 1.08998 * 109.49755 * 65.31608 * 12 11 10 45 45 H 1.08999 * 109.49855 * 185.41547 * 12 11 10 46 46 H 1.08993 * 109.46089 * 181.38537 * 13 12 11 47 47 H 1.09005 * 109.45890 * 301.35070 * 13 12 11 48 48 H 1.00905 * 110.99625 * 151.05138 * 16 14 13 49 49 H 1.08998 * 109.47629 * 300.00811 * 17 16 14 50 50 H 1.09009 * 109.46439 * 60.00348 * 17 16 14 51 51 H 0.97009 * 119.99843 * 0.02562 * 20 18 17 52 52 H 0.96999 * 120.00501 * 179.97438 * 24 23 21 53 53 H 1.09005 * 109.58607 * 246.20295 * 29 10 8 54 54 H 1.09004 * 109.58231 * 6.62587 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0802 2.8849 0.0013 6 1 3.6459 3.4241 -0.8406 7 6 3.6749 3.5685 1.3086 8 6 5.5821 2.8867 -0.1220 9 8 6.2719 2.9781 0.8713 10 7 6.1588 2.7866 -1.3361 11 6 5.3399 2.7859 -2.5560 12 6 5.6943 1.5487 -3.3871 13 6 7.2030 1.5261 -3.6428 14 6 7.9471 1.4408 -2.3082 15 1 7.6359 0.5426 -1.7749 16 7 9.3941 1.3874 -2.5561 17 6 9.8331 0.0099 -2.8165 18 6 11.3193 -0.0052 -3.0651 19 8 11.9509 1.0296 -3.0286 20 7 11.9468 -1.1687 -3.3281 21 6 13.2990 -1.1825 -3.5538 22 1 13.8615 -0.2611 -3.5204 23 6 13.9457 -2.3819 -3.8255 24 7 15.2419 -2.3952 -4.0413 25 14 12.9730 -3.9756 -3.8824 26 1 12.4882 -4.2103 -5.2663 27 1 13.8450 -5.1030 -3.4655 28 1 11.8125 -3.8804 -2.9609 29 6 7.6186 2.6824 -1.4652 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6768 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9338 0.9284 -0.8891 38 1 3.9330 0.9286 0.8908 39 1 4.0175 2.9702 2.1528 40 1 2.5898 3.6641 1.3475 41 1 4.1288 4.5584 1.3569 42 1 4.2840 2.7554 -2.2873 43 1 5.5458 3.6863 -3.1348 44 1 5.4039 0.6498 -2.8433 45 1 5.1645 1.5859 -4.3389 46 1 7.4546 0.6599 -4.2548 47 1 7.4966 2.4369 -4.1647 48 1 9.9078 1.7913 -1.7873 49 1 9.6031 -0.6142 -1.9529 50 1 9.3137 -0.3773 -3.6931 51 1 11.4416 -1.9963 -3.3577 52 1 15.6935 -3.2325 -4.2306 53 1 8.0066 3.5745 -1.9569 54 1 8.0667 2.5835 -0.4764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207979669.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:25 Heat of formation + Delta-G solvation = -117.246572 kcal Electronic energy + Delta-G solvation = -30050.639038 eV Core-core repulsion = 26020.311248 eV Total energy + Delta-G solvation = -4030.327789 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.54205 -40.36618 -38.95695 -37.34807 -36.41499 -35.81635 -34.22466 -33.77240 -33.20105 -31.29316 -29.48487 -28.13529 -27.05501 -25.94256 -25.18608 -23.54680 -23.10511 -21.73009 -21.34228 -21.21385 -20.32194 -19.54507 -18.48057 -17.86018 -17.20177 -16.85378 -16.62834 -16.51778 -16.26362 -15.95028 -15.56103 -15.32475 -15.17011 -15.04970 -14.76470 -14.61272 -14.35330 -14.28205 -14.14651 -13.91422 -13.72016 -13.52353 -13.44515 -13.30512 -12.96303 -12.94789 -12.56139 -12.43791 -12.41018 -12.21641 -12.01588 -11.99749 -11.92896 -11.83274 -11.70675 -11.63941 -11.53095 -11.47698 -11.28233 -10.65140 -10.47244 -10.27074 -9.73367 -9.42252 -8.42884 -6.04183 1.28876 1.34297 1.43293 1.54505 1.88286 1.92444 2.21595 2.71193 3.12688 3.30680 3.44133 3.71325 3.81854 3.88060 3.92155 4.01248 4.08384 4.13932 4.22046 4.24950 4.25273 4.34464 4.37070 4.43743 4.48538 4.57150 4.60422 4.67420 4.77044 4.79463 4.81506 4.85582 4.95335 4.97557 5.02541 5.06368 5.09707 5.13490 5.19623 5.25902 5.29550 5.36994 5.39708 5.47850 5.49894 5.51861 5.56780 5.87455 5.99826 6.25781 6.38796 6.57209 6.85552 7.12868 7.36763 7.93064 8.74702 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014933 B = 0.002088 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.643587 B =13408.121772 C =14307.006299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.112 4.112 4 C -0.104 4.104 5 C -0.102 4.102 6 H 0.123 0.877 7 C -0.133 4.133 8 C 0.510 3.490 9 O -0.591 6.591 10 N -0.606 5.606 11 C 0.097 3.903 12 C -0.126 4.126 13 C -0.109 4.109 14 C 0.083 3.917 15 H 0.047 0.953 16 N -0.676 5.676 17 C 0.065 3.935 18 C 0.448 3.552 19 O -0.613 6.613 20 N -0.590 5.590 21 C -0.330 4.330 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.966 3.034 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.233 1.233 29 C 0.114 3.886 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.049 0.951 39 H 0.044 0.956 40 H 0.090 0.910 41 H 0.046 0.954 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.069 0.931 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.343 0.657 49 H 0.071 0.929 50 H 0.117 0.883 51 H 0.390 0.610 52 H 0.280 0.720 53 H 0.075 0.925 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.668 4.663 3.971 38.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.149 4.149 4 C -0.142 4.142 5 C -0.123 4.123 6 H 0.141 0.859 7 C -0.191 4.191 8 C 0.300 3.700 9 O -0.472 6.472 10 N -0.338 5.338 11 C -0.024 4.024 12 C -0.164 4.164 13 C -0.147 4.147 14 C -0.027 4.027 15 H 0.065 0.935 16 N -0.309 5.309 17 C -0.067 4.067 18 C 0.236 3.764 19 O -0.498 6.498 20 N -0.231 5.231 21 C -0.459 4.459 22 H 0.073 0.927 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.786 3.214 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.156 1.156 29 C -0.010 4.010 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.109 0.891 41 H 0.065 0.935 42 H 0.134 0.866 43 H 0.100 0.900 44 H 0.088 0.912 45 H 0.123 0.877 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.161 0.839 49 H 0.088 0.912 50 H 0.135 0.865 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.093 0.907 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -36.752 5.465 3.799 37.350 hybrid contribution 1.027 -1.210 0.955 1.852 sum -35.724 4.255 4.755 36.290 Atomic orbital electron populations 1.21769 0.95393 1.01711 1.02122 1.21540 0.96246 0.96907 1.01840 1.21622 0.92865 0.97095 1.03359 1.21538 0.97212 0.92965 1.02477 1.21431 0.88846 0.99956 1.02058 0.85904 1.21675 1.02409 0.99647 0.95354 1.21505 0.92144 0.74394 0.81967 1.90681 1.66439 1.51734 1.38320 1.48203 1.06512 1.72030 1.07081 1.22183 0.96306 0.99519 0.84357 1.21921 0.94936 0.98020 1.01554 1.21572 0.94837 1.03043 0.95281 1.21962 0.86973 0.96796 0.97009 0.93501 1.60153 1.04229 1.17967 1.48524 1.21651 0.90482 0.91280 1.03316 1.20920 0.90768 0.83218 0.81486 1.90547 1.68968 1.33755 1.56497 1.42021 1.07555 1.08570 1.64986 1.19006 0.83408 0.95933 1.47571 0.92710 1.26137 0.96827 1.02545 0.95925 1.69803 1.10334 1.29333 1.47894 0.85352 0.79113 0.76601 0.80362 1.17877 1.19984 1.15643 1.21600 0.81350 0.98185 0.99855 0.92748 0.92054 0.92955 0.91800 0.92980 0.91316 0.90021 0.90757 0.93188 0.93673 0.89109 0.93524 0.86629 0.90008 0.91197 0.87673 0.91482 0.91527 0.83857 0.91168 0.86497 0.77466 0.91097 0.90672 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 71.98 0.71 -0.31 16 2 C -0.13 -0.98 5.93 30.59 0.18 -0.80 16 3 C -0.11 -0.72 4.97 30.59 0.15 -0.57 16 4 C -0.10 -1.06 4.50 30.60 0.14 -0.93 16 5 C -0.10 -1.25 1.88 -11.54 -0.02 -1.27 16 6 H 0.12 0.77 6.35 -2.39 -0.02 0.75 16 7 C -0.13 -1.80 8.20 71.98 0.59 -1.21 16 8 C 0.51 10.81 6.82 87.66 0.60 11.40 16 9 O -0.59 -18.58 15.62 -3.03 -0.05 -18.63 16 10 N -0.61 -10.94 2.97 -818.06 -2.43 -13.37 16 11 C 0.10 0.94 6.12 86.36 0.53 1.47 16 12 C -0.13 -1.23 6.08 30.67 0.19 -1.04 16 13 C -0.11 -1.87 5.39 30.62 0.17 -1.71 16 14 C 0.08 1.85 2.66 45.14 0.12 1.97 16 15 H 0.05 1.05 7.80 -2.39 -0.02 1.03 16 16 N -0.68 -20.49 5.93 -494.42 -2.93 -23.42 16 17 C 0.07 2.04 5.97 85.55 0.51 2.55 16 18 C 0.45 20.64 7.82 87.65 0.69 21.33 16 19 O -0.61 -34.71 15.78 -3.06 -0.05 -34.76 16 20 N -0.59 -28.22 5.09 -307.00 -1.56 -29.79 16 21 C -0.33 -19.60 10.16 84.04 0.85 -18.75 16 22 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.02 -0.88 5.50 84.93 0.47 -0.41 16 24 N -0.93 -56.72 13.96 21.66 0.30 -56.41 16 25 Si 0.97 39.00 27.74 68.60 1.90 40.90 16 26 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 28 H -0.23 -7.95 6.52 99.48 0.65 -7.31 16 29 C 0.11 2.63 5.71 86.51 0.49 3.13 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.06 0.47 8.14 -2.39 -0.02 0.46 16 34 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 35 H 0.07 0.44 6.70 -2.39 -0.02 0.43 16 36 H 0.08 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.07 0.68 7.81 -2.39 -0.02 0.66 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.04 0.79 8.07 -2.39 -0.02 0.77 16 40 H 0.09 0.71 6.87 -2.39 -0.02 0.70 16 41 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.12 0.49 5.20 -2.39 -0.01 0.47 16 43 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.07 1.18 7.43 -2.39 -0.02 1.17 16 47 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.34 11.52 8.06 -89.69 -0.72 10.79 16 49 H 0.07 1.90 8.06 -2.39 -0.02 1.88 16 50 H 0.12 3.03 7.42 -2.38 -0.02 3.02 16 51 H 0.39 15.39 5.76 -92.70 -0.53 14.86 16 52 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 53 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 54 H 0.06 1.85 7.03 -2.39 -0.02 1.84 16 Total: -1.00 -82.82 419.55 1.12 -81.70 By element: Atomic # 1 Polarization: 39.34 SS G_CDS: -0.43 Total: 38.92 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.36 Total: 14.86 kcal Atomic # 7 Polarization: -116.37 SS G_CDS: -6.62 Total: -122.99 kcal Atomic # 8 Polarization: -53.29 SS G_CDS: -0.10 Total: -53.38 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 1.90 Total: 40.90 kcal Total: -82.82 1.12 -81.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207979669.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.549 kcal (2) G-P(sol) polarization free energy of solvation -82.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds