Wall clock time and date at job start Sat Apr 11 2020 05:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47063 * 2 1 4 4 C 1.53003 * 109.47605 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47339 * 180.02562 * 4 3 2 6 6 H 1.08999 * 109.47130 * 304.99394 * 5 4 3 7 7 C 1.52999 * 109.47287 * 65.00351 * 5 4 3 8 8 C 1.50703 * 109.46745 * 185.00174 * 5 4 3 9 9 O 1.21279 * 120.00058 * 354.45482 * 8 5 4 10 10 N 1.34777 * 119.99688 * 174.45425 * 8 5 4 11 11 C 1.46499 * 120.00469 * 355.19321 * 10 8 5 12 12 C 1.46505 * 119.99829 * 175.19180 * 10 8 5 13 13 C 1.53008 * 109.46937 * 90.00243 * 12 10 8 14 14 H 1.08992 * 112.78585 * 75.80926 * 13 12 10 15 15 C 1.53513 * 113.47168 * 206.62153 * 13 12 10 16 16 C 1.53509 * 83.57323 * 140.78974 * 15 13 12 17 17 N 1.47474 * 87.93396 * 333.97158 * 16 15 13 18 18 C 1.46897 * 111.00311 * 138.70565 * 17 16 15 19 19 C 1.50700 * 109.47453 * 74.02567 * 18 17 16 20 20 O 1.21294 * 119.99572 * 0.02562 * 19 18 17 21 21 N 1.34772 * 120.00193 * 180.02562 * 19 18 17 22 22 C 1.37106 * 119.99704 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00237 * 0.02562 * 22 21 19 24 24 C 1.38945 * 119.99849 * 180.02562 * 22 21 19 25 25 N 1.31413 * 120.00247 * 359.97438 * 24 22 21 26 26 Si 1.86802 * 120.00300 * 180.27497 * 24 22 21 27 27 H 1.48500 * 109.47155 * 269.72483 * 26 24 22 28 28 H 1.48510 * 109.46827 * 29.72237 * 26 24 22 29 29 H 1.48490 * 109.47431 * 149.72215 * 26 24 22 30 30 H 1.09002 * 109.47037 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47230 * 300.00038 * 1 2 3 32 32 H 1.09005 * 109.47048 * 59.99751 * 1 2 3 33 33 H 1.08994 * 109.47117 * 240.00428 * 2 1 3 34 34 H 1.08997 * 109.47471 * 119.99776 * 2 1 3 35 35 H 1.08999 * 109.47129 * 59.99899 * 3 2 1 36 36 H 1.09005 * 109.47392 * 300.00038 * 3 2 1 37 37 H 1.09007 * 109.46485 * 60.00045 * 4 3 2 38 38 H 1.08997 * 109.46881 * 300.00861 * 4 3 2 39 39 H 1.08998 * 109.46885 * 289.82345 * 7 5 4 40 40 H 1.09003 * 109.46867 * 49.82263 * 7 5 4 41 41 H 1.08999 * 109.46700 * 169.82298 * 7 5 4 42 42 H 1.09006 * 109.46735 * 264.15739 * 11 10 8 43 43 H 1.08999 * 109.46809 * 24.15349 * 11 10 8 44 44 H 1.08992 * 109.47703 * 144.15252 * 11 10 8 45 45 H 1.08996 * 109.46922 * 330.00236 * 12 10 8 46 46 H 1.08998 * 109.47037 * 209.99715 * 12 10 8 47 47 H 1.09008 * 114.16707 * 254.43479 * 15 13 12 48 48 H 1.09000 * 114.17559 * 26.95064 * 15 13 12 49 49 H 1.09008 * 113.47430 * 219.20441 * 16 15 13 50 50 H 1.09000 * 113.47766 * 88.74229 * 16 15 13 51 51 H 1.09000 * 109.46717 * 314.03088 * 18 17 16 52 52 H 1.08999 * 109.47705 * 194.03265 * 18 17 16 53 53 H 0.96997 * 120.00317 * 0.02562 * 21 19 18 54 54 H 0.96998 * 120.00282 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 1 3.6457 3.4244 -0.8406 7 6 3.6746 3.5688 1.3087 8 6 5.5818 2.8869 -0.1220 9 8 6.1933 1.8398 -0.1011 10 7 6.2456 4.0524 -0.2553 11 6 5.5022 5.3079 -0.3864 12 6 7.7105 4.0636 -0.2692 13 6 8.2081 3.9105 -1.7080 14 1 8.1040 4.8259 -2.2903 15 6 9.6027 3.2768 -1.8086 16 6 8.9982 2.5549 -3.0210 17 7 7.6750 2.7164 -2.3901 18 6 6.6594 3.0875 -3.3843 19 6 6.3174 1.8852 -4.2261 20 8 6.8656 0.8235 -4.0178 21 7 5.4026 1.9898 -5.2102 22 6 5.0912 0.8957 -5.9757 23 1 5.5786 -0.0499 -5.7897 24 6 4.1485 1.0036 -6.9906 25 7 3.5549 2.1541 -7.2167 26 14 3.7184 -0.4888 -8.0286 27 1 4.6134 -0.5430 -9.2124 28 1 3.8931 -1.7216 -7.2191 29 1 2.3071 -0.3884 -8.4792 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9564 -0.8900 37 1 3.9336 0.9287 -0.8892 38 1 3.9329 0.9289 0.8908 39 1 2.5966 3.7298 1.3155 40 1 3.9528 2.9355 2.1512 41 1 4.1858 4.5279 1.3907 42 1 5.3993 5.5607 -1.4417 43 1 4.5136 5.1928 0.0578 44 1 6.0407 6.1043 0.1271 45 1 8.0859 3.2376 0.3349 46 1 8.0705 5.0069 0.1412 47 1 10.3960 3.9814 -2.0585 48 1 9.8562 2.6211 -0.9756 49 1 9.3134 1.5151 -3.1088 50 1 9.1050 3.1086 -3.9538 51 1 7.0493 3.8796 -4.0237 52 1 5.7633 3.4406 -2.8741 53 1 4.9646 2.8390 -5.3771 54 1 2.8965 2.2293 -7.9250 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234040646.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:15 Heat of formation + Delta-G solvation = -67.445175 kcal Electronic energy + Delta-G solvation = -31860.975733 eV Core-core repulsion = 27832.807494 eV Total energy + Delta-G solvation = -4028.168239 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.72650 -40.62829 -39.54478 -37.28833 -36.37710 -35.97472 -34.31503 -33.36866 -32.06113 -30.30903 -29.03955 -27.59188 -27.46284 -25.93640 -25.36492 -24.57428 -22.70595 -21.67566 -21.15725 -20.56743 -19.96726 -19.75765 -17.92729 -17.82548 -17.12323 -17.01393 -16.83445 -16.56874 -16.48284 -15.88619 -15.63885 -15.43087 -15.24253 -14.93450 -14.64343 -14.28024 -14.13700 -14.02296 -13.81764 -13.73697 -13.57842 -13.47633 -13.29485 -13.00486 -12.86550 -12.79127 -12.53351 -12.48403 -12.45617 -12.30901 -12.17441 -12.03863 -11.93344 -11.89478 -11.83427 -11.57902 -11.52683 -11.45446 -11.39442 -10.40852 -10.38871 -10.05118 -9.74816 -9.30720 -8.50384 -5.99081 1.33094 1.36377 1.49572 1.89478 2.00319 2.17854 2.25922 2.89040 3.14996 3.31167 3.57902 3.64700 3.74162 3.85586 3.93515 4.13951 4.17631 4.20847 4.23465 4.27046 4.27530 4.32571 4.40448 4.43805 4.46523 4.50235 4.57588 4.67742 4.75431 4.77615 4.82705 4.83908 4.85461 4.92227 4.95945 4.98486 5.05089 5.07000 5.08760 5.20045 5.25431 5.32086 5.34467 5.36067 5.44428 5.45971 5.49932 5.81676 5.91209 6.17446 6.56654 6.59449 7.09171 7.48355 7.50467 8.08464 8.67259 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.006900 B = 0.004777 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4057.066424 B = 5860.114990 C = 8908.744216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.131 4.131 3 C -0.109 4.109 4 C -0.094 4.094 5 C -0.108 4.108 6 H 0.095 0.905 7 C -0.140 4.140 8 C 0.506 3.494 9 O -0.559 6.559 10 N -0.615 5.615 11 C 0.058 3.942 12 C 0.137 3.863 13 C 0.008 3.992 14 H 0.095 0.905 15 C -0.112 4.112 16 C -0.002 4.002 17 N -0.449 5.449 18 C 0.035 3.965 19 C 0.440 3.560 20 O -0.618 6.618 21 N -0.573 5.573 22 C -0.333 4.333 23 H 0.071 0.929 24 C -0.009 4.009 25 N -0.918 5.918 26 Si 0.990 3.010 27 H -0.268 1.268 28 H -0.278 1.278 29 H -0.265 1.265 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.120 0.880 47 H 0.109 0.891 48 H 0.088 0.912 49 H 0.049 0.951 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.088 0.912 53 H 0.395 0.605 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 13.882 17.661 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.169 4.169 3 C -0.146 4.146 4 C -0.132 4.132 5 C -0.129 4.129 6 H 0.114 0.886 7 C -0.197 4.197 8 C 0.294 3.706 9 O -0.436 6.436 10 N -0.348 5.348 11 C -0.084 4.084 12 C 0.014 3.986 13 C -0.102 4.102 14 H 0.113 0.887 15 C -0.150 4.150 16 C -0.132 4.132 17 N -0.172 5.172 18 C -0.097 4.097 19 C 0.227 3.773 20 O -0.503 6.503 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.559 5.559 26 Si 0.813 3.187 27 H -0.193 1.193 28 H -0.203 1.203 29 H -0.190 1.190 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.106 0.894 40 H 0.073 0.927 41 H 0.105 0.895 42 H 0.070 0.930 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.080 0.920 46 H 0.138 0.862 47 H 0.127 0.873 48 H 0.106 0.894 49 H 0.068 0.932 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.106 0.894 53 H 0.228 0.772 54 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.241 12.139 18.044 21.749 hybrid contribution -0.110 -0.253 -1.879 1.900 sum -0.351 11.886 16.165 20.068 Atomic orbital electron populations 1.21737 0.94382 1.01976 1.02302 1.21554 0.97070 0.97116 1.01119 1.21603 0.93228 0.96944 1.02870 1.21305 0.96350 0.94994 1.00589 1.21331 0.91006 0.98417 1.02176 0.88647 1.21979 1.03493 1.00762 0.93480 1.21045 0.90662 0.83362 0.75488 1.90746 1.70503 1.32685 1.49628 1.47776 1.06667 1.07312 1.73076 1.22352 0.98652 0.84974 1.02374 1.21495 0.79443 1.03438 0.94212 1.24035 0.94821 0.93664 0.97685 0.88691 1.23067 0.95809 0.99114 0.97051 1.23619 0.91288 1.00710 0.97533 1.68996 1.02999 1.27252 1.17925 1.22215 0.99042 0.94000 0.94410 1.20768 0.82588 0.90905 0.83021 1.90500 1.56152 1.31816 1.71874 1.41893 1.36874 1.12438 1.29851 1.19575 1.22426 0.91434 1.12840 0.91090 1.25978 0.95620 1.00965 0.98302 1.69659 1.27782 1.25396 1.33023 0.84985 0.78169 0.77459 0.78058 1.19337 1.20334 1.18982 0.92580 0.91075 0.93084 0.94621 0.91763 0.89094 0.92412 0.96160 0.92441 0.89384 0.92682 0.89519 0.93047 0.88570 0.88306 0.92038 0.86200 0.87299 0.89389 0.93245 0.91791 0.91190 0.89412 0.77168 0.91186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 9.91 71.98 0.71 -2.23 16 2 C -0.13 -3.26 5.93 30.59 0.18 -3.08 16 3 C -0.11 -2.59 4.98 30.60 0.15 -2.43 16 4 C -0.09 -2.85 3.98 30.59 0.12 -2.73 16 5 C -0.11 -2.69 1.89 -11.54 -0.02 -2.71 16 6 H 0.10 2.27 7.74 -2.39 -0.02 2.25 16 7 C -0.14 -2.19 8.16 71.98 0.59 -1.60 16 8 C 0.51 15.61 6.15 87.66 0.54 16.15 16 9 O -0.56 -23.75 14.77 -3.03 -0.04 -23.79 16 10 N -0.62 -13.79 2.74 -846.74 -2.32 -16.11 16 11 C 0.06 0.76 9.76 127.77 1.25 2.01 16 12 C 0.14 2.91 5.60 86.38 0.48 3.39 16 13 C 0.01 0.20 3.37 42.18 0.14 0.34 16 14 H 0.10 1.91 7.77 -2.39 -0.02 1.90 16 15 C -0.11 -2.64 8.00 30.94 0.25 -2.39 16 16 C 0.00 -0.08 6.71 83.57 0.56 0.48 16 17 N -0.45 -16.69 4.45 -906.82 -4.04 -20.72 16 18 C 0.04 1.39 5.31 85.56 0.45 1.85 16 19 C 0.44 23.39 7.62 87.66 0.67 24.06 16 20 O -0.62 -38.56 15.34 -3.07 -0.05 -38.61 16 21 N -0.57 -31.64 5.29 -306.99 -1.62 -33.26 16 22 C -0.33 -20.11 9.68 84.04 0.81 -19.30 16 23 H 0.07 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.49 5.50 84.93 0.47 -0.02 16 25 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 26 Si 0.99 44.81 29.55 68.60 2.03 46.84 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 29 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 33 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.61 6.80 -2.39 -0.02 1.59 16 36 H 0.06 1.42 8.14 -2.38 -0.02 1.41 16 37 H 0.02 0.80 8.04 -2.38 -0.02 0.78 16 38 H 0.06 1.78 8.11 -2.39 -0.02 1.76 16 39 H 0.09 1.03 7.09 -2.39 -0.02 1.01 16 40 H 0.05 0.95 8.09 -2.39 -0.02 0.93 16 41 H 0.09 1.00 5.41 -2.39 -0.01 0.99 16 42 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.10 1.04 4.11 -2.39 -0.01 1.03 16 44 H 0.10 0.69 7.98 -2.39 -0.02 0.67 16 45 H 0.06 1.64 7.23 -2.39 -0.02 1.62 16 46 H 0.12 1.44 7.95 -2.39 -0.02 1.42 16 47 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.09 2.17 7.93 -2.39 -0.02 2.15 16 49 H 0.05 2.05 8.13 -2.38 -0.02 2.03 16 50 H 0.06 2.11 7.70 -2.39 -0.02 2.09 16 51 H 0.07 2.40 7.56 -2.39 -0.02 2.39 16 52 H 0.09 3.29 7.68 -2.39 -0.02 3.27 16 53 H 0.39 20.51 7.90 -92.71 -0.73 19.78 16 54 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -84.24 422.90 1.74 -82.50 By element: Atomic # 1 Polarization: 41.63 SS G_CDS: 0.14 Total: 41.78 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 7.36 Total: 11.79 kcal Atomic # 7 Polarization: -112.81 SS G_CDS: -7.69 Total: -120.50 kcal Atomic # 8 Polarization: -62.31 SS G_CDS: -0.09 Total: -62.40 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -84.24 1.74 -82.50 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234040646.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.052 kcal (2) G-P(sol) polarization free energy of solvation -84.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds