Wall clock time and date at job start Sat Apr 11 2020 05:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46670 * 2 1 4 4 C 1.52992 * 109.47118 * 120.00023 * 2 1 3 5 5 C 1.50703 * 109.47181 * 174.99979 * 4 2 1 6 6 O 1.21282 * 119.99832 * 354.17375 * 5 4 2 7 7 N 1.34775 * 119.99905 * 174.17455 * 5 4 2 8 8 C 1.46958 * 120.36045 * 174.78617 * 7 5 4 9 9 C 1.52341 * 109.09661 * 291.67158 * 8 7 5 10 10 C 1.53802 * 109.15812 * 287.30852 * 9 8 7 11 11 C 1.52449 * 109.40951 * 77.84024 * 10 9 8 12 12 C 1.53951 * 110.72624 * 246.26671 * 11 10 9 13 13 C 1.52874 * 109.72772 * 44.35953 * 12 11 10 14 14 H 1.09000 * 109.48696 * 312.89682 * 13 12 11 15 15 N 1.46903 * 109.48516 * 192.86313 * 13 12 11 16 16 C 1.46905 * 110.99944 * 155.03716 * 15 13 12 17 17 C 1.50700 * 109.46920 * 179.97438 * 16 15 13 18 18 O 1.21294 * 120.00436 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99968 * 180.02562 * 17 16 15 20 20 C 1.37097 * 120.00146 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99761 * 359.97438 * 20 19 17 22 22 C 1.38950 * 120.00148 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99830 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00175 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46907 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47334 * 119.99650 * 24 22 20 27 27 H 1.48497 * 109.46735 * 239.99984 * 24 22 20 28 28 C 1.45311 * 120.38146 * 354.80906 * 7 5 4 29 29 H 1.09002 * 109.46786 * 299.99748 * 1 2 3 30 30 H 1.08997 * 109.46696 * 59.99961 * 1 2 3 31 31 H 1.09004 * 109.46804 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.46786 * 240.00252 * 2 1 3 33 33 H 1.09002 * 109.47310 * 60.00574 * 3 2 1 34 34 H 1.09008 * 109.46355 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47593 * 299.99489 * 3 2 1 36 36 H 1.09003 * 109.47180 * 55.00037 * 4 2 1 37 37 H 1.09000 * 109.47500 * 295.00370 * 4 2 1 38 38 H 1.09004 * 109.53664 * 171.78576 * 8 7 5 39 39 H 1.08996 * 109.60305 * 51.59784 * 8 7 5 40 40 H 1.09002 * 109.52473 * 167.40543 * 9 8 7 41 41 H 1.08993 * 109.52302 * 47.21432 * 9 8 7 42 42 H 1.08993 * 109.48332 * 317.85839 * 10 9 8 43 43 H 1.08999 * 109.49029 * 197.82641 * 10 9 8 44 44 H 1.09000 * 109.22358 * 125.94144 * 11 10 9 45 45 H 1.09004 * 109.22556 * 6.58434 * 11 10 9 46 46 H 1.09005 * 109.42683 * 284.28246 * 12 11 10 47 47 H 1.08995 * 109.38606 * 164.41457 * 12 11 10 48 48 H 1.00907 * 111.00185 * 31.08526 * 15 13 12 49 49 H 1.08998 * 109.46779 * 299.99746 * 16 15 13 50 50 H 1.09001 * 109.46793 * 60.00445 * 16 15 13 51 51 H 0.97001 * 119.99877 * 359.97438 * 19 17 16 52 52 H 0.96998 * 120.00045 * 180.02562 * 23 22 20 53 53 H 1.09001 * 109.66037 * 16.87274 * 28 7 5 54 54 H 1.09003 * 109.68824 * 256.34639 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5420 -0.8294 1.1888 6 8 4.1363 -0.4705 0.1944 7 7 4.2247 -1.3249 2.2399 8 6 5.6754 -1.5407 2.1483 9 6 5.9497 -2.6758 1.1699 10 6 5.5457 -4.0103 1.8189 11 6 4.0301 -4.1643 1.7593 12 6 3.4231 -4.1313 3.1737 13 6 4.0608 -3.0017 3.9827 14 1 5.1439 -3.0369 3.8653 15 7 3.7163 -3.1604 5.4019 16 6 4.7196 -2.5188 6.2621 17 6 4.3330 -2.7016 7.7072 18 8 3.3215 -3.3071 7.9925 19 7 5.1111 -2.1921 8.6826 20 6 4.7597 -2.3588 9.9972 21 1 3.8591 -2.8980 10.2512 22 6 5.5617 -1.8331 11.0028 23 7 6.6573 -1.1766 10.6937 24 14 5.0825 -2.0596 12.7940 25 1 3.8147 -2.8288 12.8738 26 1 6.1565 -2.7997 13.5040 27 1 4.8950 -0.7300 13.4281 28 6 3.5346 -1.6523 3.4761 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6054 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 6.0676 -1.8038 3.1308 39 1 6.1590 -0.6301 1.7949 40 1 7.0116 -2.6967 0.9246 41 1 5.3680 -2.5218 0.2611 42 1 5.8716 -4.0222 2.8589 43 1 6.0161 -4.8334 1.2811 44 1 3.7843 -5.1145 1.2853 45 1 3.6095 -3.3501 1.1692 46 1 3.6099 -5.0833 3.6707 47 1 2.3484 -3.9642 3.1024 48 1 3.6055 -4.1346 5.6404 49 1 5.6940 -2.9744 6.0859 50 1 4.7688 -1.4547 6.0314 51 1 5.9202 -1.7082 8.4544 52 1 7.2173 -0.8099 11.3956 53 1 2.4629 -1.7227 3.2903 54 1 3.7285 -0.8799 4.2205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264113445.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:25 Heat of formation + Delta-G solvation = -101.969480 kcal Electronic energy + Delta-G solvation = -31217.108129 eV Core-core repulsion = 27187.442804 eV Total energy + Delta-G solvation = -4029.665325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.73902 -40.17487 -39.18127 -36.76911 -36.18871 -35.71408 -35.28732 -33.31504 -32.87912 -30.09391 -28.64984 -27.95802 -27.70931 -27.12153 -25.67044 -23.79165 -22.79774 -21.43047 -21.05520 -20.78609 -19.87844 -19.52945 -18.30084 -17.77654 -17.25911 -16.99965 -16.71696 -16.31345 -16.26414 -15.85696 -15.60153 -15.30832 -15.16906 -15.03338 -14.75982 -14.65096 -14.27473 -14.04387 -13.90847 -13.70883 -13.50595 -13.26152 -13.16595 -13.01911 -12.91519 -12.84040 -12.74614 -12.55690 -12.39825 -12.27840 -12.10543 -11.99341 -11.97047 -11.72401 -11.61628 -11.54193 -11.50306 -11.46600 -11.29116 -10.61809 -10.30326 -9.99907 -9.54389 -9.24452 -8.45836 -5.94074 1.37262 1.42919 1.56637 1.68177 2.02179 2.07159 2.30147 2.93169 3.21996 3.47246 3.57008 3.75888 3.84222 3.88690 3.97759 4.01769 4.03117 4.19549 4.23345 4.30812 4.35352 4.44875 4.45781 4.50982 4.58758 4.61646 4.66070 4.71602 4.72633 4.75224 4.77502 4.85428 4.89114 4.96373 5.05003 5.06816 5.11402 5.13067 5.18944 5.28226 5.30390 5.35231 5.42651 5.44023 5.47985 5.51023 5.64447 5.90428 6.10806 6.40192 6.48929 6.61359 7.14330 7.24226 7.58296 8.13288 8.71753 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.002417 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.089813 B =11583.754154 C =12219.614644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.079 4.079 3 C -0.149 4.149 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.570 6.570 7 N -0.601 5.601 8 C 0.110 3.890 9 C -0.129 4.129 10 C -0.124 4.124 11 C -0.111 4.111 12 C -0.112 4.112 13 C 0.068 3.932 14 H 0.070 0.930 15 N -0.671 5.671 16 C 0.065 3.935 17 C 0.440 3.560 18 O -0.621 6.621 19 N -0.575 5.575 20 C -0.330 4.330 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.117 3.883 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.350 0.650 49 H 0.066 0.934 50 H 0.101 0.899 51 H 0.396 0.604 52 H 0.277 0.723 53 H 0.100 0.900 54 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.519 -0.839 -21.918 22.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.098 4.098 3 C -0.206 4.206 4 C -0.177 4.177 5 C 0.305 3.695 6 O -0.450 6.450 7 N -0.334 5.334 8 C -0.012 4.012 9 C -0.167 4.167 10 C -0.161 4.161 11 C -0.150 4.150 12 C -0.150 4.150 13 C -0.042 4.042 14 H 0.087 0.913 15 N -0.305 5.305 16 C -0.067 4.067 17 C 0.227 3.773 18 O -0.507 6.507 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.815 3.185 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.198 1.198 28 C -0.006 4.006 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.097 0.903 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.170 0.830 49 H 0.083 0.917 50 H 0.119 0.881 51 H 0.230 0.770 52 H 0.086 0.914 53 H 0.118 0.882 54 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.161 -0.423 -22.103 22.702 hybrid contribution 1.204 -0.297 0.959 1.568 sum -3.957 -0.721 -21.144 21.523 Atomic orbital electron populations 1.21828 0.93383 1.02470 1.02437 1.20838 0.96279 0.96007 0.96643 1.21880 1.01052 0.95988 1.01686 1.21902 0.90553 1.04030 1.01226 1.21028 0.90942 0.75721 0.81840 1.90644 1.71672 1.49826 1.32865 1.47835 1.08471 1.63378 1.13697 1.21559 0.80366 0.98521 1.00722 1.21954 1.01947 0.94431 0.98404 1.21810 0.96027 0.97007 1.01246 1.21645 0.95438 1.01794 0.96083 1.21868 1.00710 0.97245 0.95204 1.22262 0.99671 0.95588 0.86687 0.91279 1.59941 1.47043 1.21630 1.01891 1.21586 0.94338 1.01830 0.88967 1.20859 0.84954 0.83096 0.88377 1.90499 1.28645 1.46976 1.84604 1.41951 1.23972 1.49832 1.05444 1.19684 1.09005 1.34572 0.82721 0.90287 1.26013 0.95304 0.95890 1.04109 1.69672 1.14268 1.36708 1.35575 0.84900 0.78258 0.78259 0.77121 1.19718 1.19686 1.19754 1.21593 0.98177 0.96024 0.84838 0.92055 0.92081 0.91836 0.91902 0.92645 0.93615 0.92399 0.87248 0.88031 0.88981 0.92089 0.90316 0.92433 0.91210 0.91351 0.91473 0.92609 0.91561 0.90709 0.82977 0.91664 0.88077 0.77040 0.91373 0.88229 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.19 71.99 0.66 -1.12 16 2 C -0.08 -1.30 2.56 -10.79 -0.03 -1.33 16 3 C -0.15 -2.74 8.94 71.98 0.64 -2.09 16 4 C -0.14 -2.21 3.56 29.85 0.11 -2.10 16 5 C 0.51 10.95 5.67 87.66 0.50 11.45 16 6 O -0.57 -15.73 13.16 -3.04 -0.04 -15.77 16 7 N -0.60 -11.50 1.68 -824.01 -1.39 -12.89 16 8 C 0.11 2.07 5.17 86.07 0.45 2.51 16 9 C -0.13 -2.25 5.56 30.65 0.17 -2.08 16 10 C -0.12 -1.91 5.49 30.68 0.17 -1.75 16 11 C -0.11 -1.74 5.40 30.73 0.17 -1.58 16 12 C -0.11 -1.89 5.18 30.87 0.16 -1.73 16 13 C 0.07 1.32 2.01 45.02 0.09 1.41 16 14 H 0.07 1.30 3.01 -2.39 -0.01 1.29 16 15 N -0.67 -18.22 5.94 -495.01 -2.94 -21.16 16 16 C 0.07 2.02 5.94 85.56 0.51 2.53 16 17 C 0.44 19.85 7.82 87.66 0.69 20.54 16 18 O -0.62 -32.92 15.78 -3.07 -0.05 -32.96 16 19 N -0.57 -28.54 5.29 -306.98 -1.62 -30.16 16 20 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 21 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 23 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 24 Si 0.99 42.32 29.55 68.60 2.03 44.35 16 25 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 28 C 0.12 2.22 5.41 86.75 0.47 2.69 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 1.22 7.87 -2.39 -0.02 1.21 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.04 1.07 6.17 -2.38 -0.01 1.05 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.11 1.42 7.97 -2.39 -0.02 1.40 16 37 H 0.10 1.47 7.60 -2.39 -0.02 1.45 16 38 H 0.09 1.55 6.07 -2.38 -0.01 1.54 16 39 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.24 6.37 -2.39 -0.02 1.23 16 42 H 0.07 1.10 5.47 -2.39 -0.01 1.09 16 43 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 0.98 5.38 -2.39 -0.01 0.97 16 46 H 0.07 1.13 7.82 -2.38 -0.02 1.11 16 47 H 0.07 1.23 7.87 -2.39 -0.02 1.21 16 48 H 0.35 10.13 7.86 -89.69 -0.70 9.43 16 49 H 0.07 1.77 8.06 -2.39 -0.02 1.75 16 50 H 0.10 2.85 7.33 -2.39 -0.02 2.83 16 51 H 0.40 18.69 7.90 -92.71 -0.73 17.96 16 52 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 53 H 0.10 1.68 5.76 -2.39 -0.01 1.67 16 54 H 0.06 1.33 7.26 -2.39 -0.02 1.31 16 Total: -1.00 -67.03 403.27 1.78 -65.25 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: -0.52 Total: 42.52 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.03 Total: 9.55 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -5.67 Total: -112.93 kcal Atomic # 8 Polarization: -48.65 SS G_CDS: -0.09 Total: -48.74 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -67.03 1.78 -65.25 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264113445.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.720 kcal (2) G-P(sol) polarization free energy of solvation -67.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds