Wall clock time and date at job start Sat Apr 11 2020 05:48:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36937 * 119.99837 * 2 1 4 4 H 1.07997 * 120.00372 * 201.99455 * 3 2 1 5 5 C 1.38810 * 119.99745 * 21.99543 * 3 2 1 6 6 N 1.31622 * 120.00567 * 12.71693 * 5 3 2 7 7 Si 1.86802 * 120.00164 * 192.71148 * 5 3 2 8 8 H 1.48506 * 109.46711 * 0.02562 * 7 5 3 9 9 H 1.48496 * 109.47090 * 120.00231 * 7 5 3 10 10 H 1.48500 * 109.47483 * 240.00628 * 7 5 3 11 11 C 1.46498 * 119.99948 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.49264 * 179.97438 * 11 2 1 13 13 C 1.53038 * 109.49919 * 299.99733 * 11 2 1 14 14 C 1.53042 * 109.54183 * 181.35038 * 13 11 2 15 15 C 1.53187 * 109.31230 * 298.64103 * 14 13 11 16 16 N 1.46924 * 108.78044 * 54.63040 * 15 14 13 17 17 C 1.34777 * 120.63348 * 126.37116 * 16 15 14 18 18 O 1.21281 * 119.99979 * 180.02562 * 17 16 15 19 19 C 1.50701 * 119.99508 * 359.97438 * 17 16 15 20 20 C 1.53002 * 109.46546 * 180.02562 * 19 17 16 21 21 N 1.46502 * 109.46869 * 180.02562 * 20 19 17 22 22 C 1.34774 * 120.00234 * 179.97438 * 21 20 19 23 23 O 1.21284 * 120.00026 * 0.02562 * 22 21 20 24 24 C 1.50700 * 120.00447 * 180.02562 * 22 21 20 25 25 C 1.52998 * 109.47501 * 179.97438 * 24 22 21 26 26 C 1.52993 * 109.47196 * 300.00427 * 24 22 21 27 27 C 1.53001 * 109.46664 * 59.99981 * 24 22 21 28 28 C 1.46933 * 118.73801 * 306.64675 * 16 15 14 29 29 H 1.08992 * 109.47150 * 274.31932 * 1 2 3 30 30 H 1.08997 * 109.47176 * 34.32509 * 1 2 3 31 31 H 1.09008 * 109.46686 * 154.32321 * 1 2 3 32 32 H 0.96992 * 120.00389 * 179.97438 * 6 5 3 33 33 H 1.08999 * 109.45743 * 61.33056 * 13 11 2 34 34 H 1.09008 * 109.46261 * 301.37451 * 13 11 2 35 35 H 1.08997 * 109.49769 * 178.68494 * 14 13 11 36 36 H 1.08997 * 109.49267 * 58.58923 * 14 13 11 37 37 H 1.09000 * 109.58530 * 294.84496 * 15 14 13 38 38 H 1.08994 * 109.58924 * 174.42255 * 15 14 13 39 39 H 1.08999 * 109.47504 * 300.00070 * 19 17 16 40 40 H 1.08995 * 109.46876 * 60.00502 * 19 17 16 41 41 H 1.09000 * 109.47604 * 299.99940 * 20 19 17 42 42 H 1.08995 * 109.47298 * 60.00546 * 20 19 17 43 43 H 0.97001 * 119.99912 * 0.02562 * 21 20 19 44 44 H 1.09008 * 109.46821 * 60.00209 * 25 24 22 45 45 H 1.08995 * 109.47430 * 179.97438 * 25 24 22 46 46 H 1.08999 * 109.47142 * 300.00346 * 25 24 22 47 47 H 1.08997 * 109.47479 * 59.99266 * 26 24 22 48 48 H 1.09002 * 109.47611 * 179.97438 * 26 24 22 49 49 H 1.09004 * 109.47369 * 299.99551 * 26 24 22 50 50 H 1.09000 * 109.47088 * 60.00671 * 27 24 22 51 51 H 1.08997 * 109.47052 * 179.97438 * 27 24 22 52 52 H 1.08997 * 109.47441 * 300.00238 * 27 24 22 53 53 H 1.08993 * 109.58488 * 173.14350 * 28 16 15 54 54 H 1.08997 * 109.58320 * 293.56827 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1707 1.2201 -0.3503 5 6 1.5314 2.3443 0.4502 6 7 0.3917 2.2703 1.1046 7 14 2.3167 4.0082 0.1277 8 1 3.5845 3.8201 -0.6224 9 1 1.3884 4.8468 -0.6725 10 1 2.6012 4.6804 1.4209 11 6 2.1975 -1.2687 -0.0006 12 1 3.2693 -1.0699 -0.0009 13 6 1.8283 -2.0723 1.2484 14 6 2.6183 -3.3830 1.2659 15 6 2.2512 -4.2123 0.0314 16 7 2.4668 -3.3937 -1.1695 17 6 3.2385 -3.8445 -2.1784 18 8 3.4091 -3.1590 -3.1642 19 6 3.8902 -5.1998 -2.0809 20 6 4.7047 -5.4662 -3.3483 21 7 5.3378 -6.7840 -3.2538 22 6 6.1094 -7.2349 -4.2627 23 8 6.2800 -6.5495 -5.2486 24 6 6.7602 -8.5907 -4.1658 25 6 7.5738 -8.8577 -5.4337 26 6 7.6858 -8.6262 -2.9482 27 6 5.6808 -9.6649 -4.0174 28 6 1.8302 -2.0717 -1.2471 29 1 -0.3633 0.0774 1.0247 30 1 -0.3633 0.8487 -0.5795 31 1 -0.3633 -0.9263 -0.4453 32 1 -0.0402 3.0797 1.4195 33 1 0.7608 -2.2919 1.2365 34 1 2.0693 -1.4911 2.1386 35 1 2.3722 -3.9440 2.1675 36 1 3.6860 -3.1643 1.2530 37 1 1.2037 -4.5084 0.0884 38 1 2.8821 -5.0999 -0.0133 39 1 4.5499 -5.2242 -1.2135 40 1 3.1218 -5.9655 -1.9746 41 1 4.0454 -5.4417 -4.2159 42 1 5.4731 -4.7005 -3.4541 43 1 5.2011 -7.3324 -2.4655 44 1 8.3427 -8.0924 -5.5399 45 1 8.0448 -9.8381 -5.3634 46 1 6.9139 -8.8326 -6.3009 47 1 7.1059 -8.4361 -2.0451 48 1 8.1562 -9.6070 -2.8778 49 1 8.4548 -7.8609 -3.0539 50 1 5.0214 -9.6397 -4.8849 51 1 6.1514 -10.6456 -3.9477 52 1 5.1008 -9.4749 -3.1143 53 1 2.1835 -1.5476 -2.1350 54 1 0.7478 -2.1898 -1.2963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266107622.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:34 Heat of formation + Delta-G solvation = -89.611769 kcal Electronic energy + Delta-G solvation = -30306.246957 eV Core-core repulsion = 26277.117503 eV Total energy + Delta-G solvation = -4029.129454 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.45108 -41.01585 -39.01027 -36.79905 -36.65252 -36.30463 -34.01876 -32.85987 -32.09062 -30.29118 -28.16680 -28.10011 -28.05317 -26.78543 -25.54923 -24.76292 -23.12998 -23.01989 -21.21345 -20.44681 -19.65680 -18.79954 -18.32630 -17.73336 -17.21084 -17.01985 -16.76716 -16.54174 -16.18336 -15.69493 -15.52308 -15.23192 -15.10360 -14.91113 -14.75565 -14.54086 -14.39300 -14.25579 -13.78157 -13.75074 -13.61598 -13.28314 -13.03892 -13.02318 -12.90100 -12.88011 -12.75886 -12.59179 -12.52401 -12.48128 -12.29040 -12.08633 -11.93019 -11.87831 -11.82014 -11.78773 -11.66335 -11.38340 -10.94446 -10.72230 -10.65227 -10.16822 -9.69663 -8.78510 -7.86700 -5.34076 1.40967 1.43305 1.53289 1.60705 1.62788 1.80166 2.30863 2.48674 3.26153 3.48354 3.60413 3.68461 3.77289 3.88179 3.95190 3.99295 4.06968 4.12198 4.16459 4.26308 4.30338 4.38439 4.46094 4.66302 4.73548 4.74263 4.76687 4.78733 4.82310 4.86153 4.89568 4.91353 4.93286 4.98525 4.99643 5.04938 5.05456 5.17221 5.25026 5.28205 5.36092 5.38919 5.39707 5.45106 5.51167 5.52778 5.62371 5.70876 6.29469 6.46041 6.55783 7.11541 7.17256 7.26895 7.83832 8.25394 9.15960 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020743 B = 0.002022 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.538846 B =13843.374961 C =14498.646382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.611 5.611 3 C -0.263 4.263 4 H 0.060 0.940 5 C -0.050 4.050 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.273 1.273 9 H -0.290 1.290 10 H -0.287 1.287 11 C 0.167 3.833 12 H 0.042 0.958 13 C -0.124 4.124 14 C -0.124 4.124 15 C 0.103 3.897 16 N -0.604 5.604 17 C 0.506 3.494 18 O -0.597 6.597 19 C -0.132 4.132 20 C 0.139 3.861 21 N -0.710 5.710 22 C 0.512 3.488 23 O -0.593 6.593 24 C -0.082 4.082 25 C -0.130 4.130 26 C -0.139 4.139 27 C -0.138 4.138 28 C 0.112 3.888 29 H 0.009 0.991 30 H 0.012 0.988 31 H 0.031 0.969 32 H 0.249 0.751 33 H 0.058 0.942 34 H 0.039 0.961 35 H 0.105 0.895 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.048 0.952 42 H 0.044 0.956 43 H 0.420 0.580 44 H 0.042 0.958 45 H 0.088 0.912 46 H 0.043 0.957 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.046 0.954 50 H 0.047 0.953 51 H 0.089 0.911 52 H 0.081 0.919 53 H 0.051 0.949 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.217 -31.757 -0.397 33.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.334 5.334 3 C -0.394 4.394 4 H 0.078 0.922 5 C -0.245 4.245 6 N -0.581 5.581 7 Si 0.794 3.206 8 H -0.198 1.198 9 H -0.217 1.217 10 H -0.214 1.214 11 C 0.059 3.941 12 H 0.061 0.939 13 C -0.164 4.164 14 C -0.162 4.162 15 C -0.017 4.017 16 N -0.336 5.336 17 C 0.296 3.704 18 O -0.478 6.478 19 C -0.171 4.171 20 C 0.014 3.986 21 N -0.363 5.363 22 C 0.300 3.700 23 O -0.473 6.473 24 C -0.085 4.085 25 C -0.188 4.188 26 C -0.196 4.196 27 C -0.195 4.195 28 C -0.013 4.013 29 H 0.027 0.973 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.058 0.942 35 H 0.123 0.877 36 H 0.082 0.918 37 H 0.104 0.896 38 H 0.148 0.852 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.259 0.741 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.063 0.937 47 H 0.099 0.901 48 H 0.108 0.892 49 H 0.065 0.935 50 H 0.066 0.934 51 H 0.107 0.893 52 H 0.100 0.900 53 H 0.069 0.931 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.306 -30.774 -1.525 32.187 hybrid contribution -0.062 2.027 -0.118 2.031 sum 9.244 -28.748 -1.643 30.242 Atomic orbital electron populations 1.20486 0.82513 0.95708 0.97662 1.44109 1.02188 1.01064 1.86054 1.19489 0.97633 0.86844 1.35388 0.92175 1.25689 0.98563 1.01488 0.98769 1.70214 1.19641 1.27359 1.40852 0.85233 0.77874 0.80301 0.77218 1.19817 1.21661 1.21373 1.20638 0.94714 0.85321 0.93428 0.93946 1.21947 1.00344 0.96640 0.97421 1.21908 1.00057 0.95043 0.99221 1.22165 1.03795 0.93909 0.81881 1.48270 1.48512 1.17614 1.19245 1.21230 0.78137 0.89280 0.81794 1.90736 1.63145 1.60556 1.33410 1.21799 1.01755 0.93736 0.99844 1.20765 0.95806 0.84402 0.97603 1.45771 1.49962 1.18850 1.21737 1.21413 0.77856 0.89000 0.81764 1.90713 1.62873 1.60250 1.33464 1.20877 0.97596 0.90797 0.99215 1.21697 0.99262 1.02291 0.95541 1.21900 0.98641 1.03774 0.95281 1.21897 0.96951 0.97911 1.02763 1.21783 0.97039 0.83366 0.99144 0.97315 0.96949 0.95113 0.94160 0.92362 0.94184 0.87653 0.91835 0.89632 0.85180 0.84482 0.84011 0.93382 0.93770 0.74118 0.93864 0.89323 0.93733 0.90071 0.89220 0.93501 0.93359 0.89250 0.90038 0.93051 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.99 8.03 127.77 1.03 10.02 16 2 N -0.61 -31.19 2.82 -703.15 -1.98 -33.17 16 3 C -0.26 -15.05 9.60 84.03 0.81 -14.25 16 4 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 5 C -0.05 -2.87 5.10 84.86 0.43 -2.44 16 6 N -0.93 -55.80 10.64 21.65 0.23 -55.57 16 7 Si 0.97 46.75 29.57 68.60 2.03 48.78 16 8 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 9 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 10 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 11 C 0.17 6.76 2.72 44.92 0.12 6.88 16 12 H 0.04 1.87 7.86 -2.38 -0.02 1.85 16 13 C -0.12 -3.99 5.15 30.62 0.16 -3.83 16 14 C -0.12 -2.40 6.08 30.67 0.19 -2.22 16 15 C 0.10 1.57 6.34 86.36 0.55 2.12 16 16 N -0.60 -15.71 2.98 -819.76 -2.44 -18.15 16 17 C 0.51 13.67 7.70 87.66 0.67 14.35 16 18 O -0.60 -23.46 15.40 -3.03 -0.05 -23.51 16 19 C -0.13 -1.79 4.16 29.85 0.12 -1.67 16 20 C 0.14 2.88 4.96 86.38 0.43 3.31 16 21 N -0.71 -9.93 5.34 -463.06 -2.47 -12.40 16 22 C 0.51 10.23 6.48 87.66 0.57 10.80 16 23 O -0.59 -18.94 15.98 -3.04 -0.05 -18.99 16 24 C -0.08 -0.94 0.87 -52.93 -0.05 -0.99 16 25 C -0.13 -1.85 7.76 71.98 0.56 -1.29 16 26 C -0.14 -0.91 8.37 71.98 0.60 -0.31 16 27 C -0.14 -0.84 8.37 71.98 0.60 -0.24 16 28 C 0.11 4.06 5.77 86.22 0.50 4.56 16 29 H 0.01 0.46 7.41 -2.39 -0.02 0.44 16 30 H 0.01 0.65 7.21 -2.39 -0.02 0.64 16 31 H 0.03 1.29 6.35 -2.38 -0.02 1.27 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.06 1.86 7.72 -2.39 -0.02 1.84 16 34 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 35 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.13 0.72 5.93 -2.39 -0.01 0.71 16 39 H 0.14 0.95 7.69 -2.39 -0.02 0.93 16 40 H 0.14 0.81 7.94 -2.39 -0.02 0.79 16 41 H 0.05 1.28 8.10 -2.39 -0.02 1.26 16 42 H 0.04 1.22 8.10 -2.39 -0.02 1.20 16 43 H 0.42 1.96 7.31 -92.71 -0.68 1.29 16 44 H 0.04 0.77 8.10 -2.38 -0.02 0.75 16 45 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 47 H 0.08 0.20 7.56 -2.39 -0.02 0.19 16 48 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 49 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 50 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 52 H 0.08 0.16 7.56 -2.39 -0.02 0.15 16 53 H 0.05 2.26 7.01 -2.39 -0.02 2.24 16 54 H 0.07 2.32 6.48 -2.39 -0.02 2.30 16 Total: -1.00 -86.38 417.36 2.75 -83.63 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 0.19 Total: 4.57 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 7.29 Total: 24.81 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -6.66 Total: -119.29 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -0.10 Total: -42.50 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -86.38 2.75 -83.63 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266107622.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.984 kcal (2) G-P(sol) polarization free energy of solvation -86.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds