Wall clock time and date at job start Sat Apr 11 2020 05:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34773 * 119.99936 * 2 1 4 4 O 1.21283 * 120.00215 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.99809 * 0.02562 * 3 2 1 6 6 C 1.53002 * 109.47013 * 180.02562 * 5 3 2 7 7 N 1.46499 * 109.47157 * 179.97438 * 6 5 3 8 8 C 1.34773 * 119.99953 * 179.97438 * 7 6 5 9 9 O 1.21283 * 120.00215 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.99809 * 180.02562 * 8 7 6 11 11 C 1.53002 * 109.47013 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46985 * 299.99882 * 10 8 7 13 13 C 1.52995 * 109.47152 * 60.00334 * 10 8 7 14 14 C 1.46499 * 120.00111 * 179.97438 * 2 1 3 15 15 C 1.53035 * 109.46011 * 299.99988 * 14 2 1 16 16 C 1.53197 * 109.31441 * 181.38844 * 15 14 2 17 17 N 1.46936 * 108.88860 * 305.29327 * 16 15 14 18 18 C 1.36935 * 120.62903 * 233.67990 * 17 16 15 19 19 H 1.08004 * 119.99817 * 27.39183 * 18 17 16 20 20 C 1.38804 * 120.00238 * 207.39383 * 18 17 16 21 21 N 1.31624 * 120.00025 * 17.25587 * 20 18 17 22 22 Si 1.86801 * 120.00311 * 197.25673 * 20 18 17 23 23 H 1.48505 * 109.47002 * 90.00337 * 22 20 18 24 24 H 1.48506 * 109.47209 * 209.99842 * 22 20 18 25 25 H 1.48497 * 109.47373 * 330.00036 * 22 20 18 26 26 C 1.47199 * 118.55490 * 53.53522 * 17 16 15 27 27 C 1.53048 * 109.45920 * 60.06882 * 14 2 1 28 28 H 1.09005 * 109.47000 * 269.99743 * 1 2 3 29 29 H 1.08994 * 109.47190 * 29.99851 * 1 2 3 30 30 H 1.09001 * 109.46833 * 150.00548 * 1 2 3 31 31 H 1.09004 * 109.47175 * 299.99772 * 5 3 2 32 32 H 1.08999 * 109.47202 * 60.00186 * 5 3 2 33 33 H 1.08998 * 109.47065 * 299.99835 * 6 5 3 34 34 H 1.08999 * 109.47294 * 59.99863 * 6 5 3 35 35 H 0.96999 * 120.00211 * 0.02562 * 7 6 5 36 36 H 1.08999 * 109.47294 * 59.99863 * 11 10 8 37 37 H 1.09000 * 109.47025 * 180.02562 * 11 10 8 38 38 H 1.09004 * 109.46655 * 299.99712 * 11 10 8 39 39 H 1.09000 * 109.46483 * 60.00690 * 12 10 8 40 40 H 1.09000 * 109.46885 * 179.97438 * 12 10 8 41 41 H 1.08999 * 109.47398 * 300.00183 * 12 10 8 42 42 H 1.08998 * 109.47233 * 59.99976 * 13 10 8 43 43 H 1.09000 * 109.47240 * 179.97438 * 13 10 8 44 44 H 1.09006 * 109.46966 * 299.99542 * 13 10 8 45 45 H 1.09002 * 109.44878 * 180.02562 * 14 2 1 46 46 H 1.08994 * 109.50151 * 61.43686 * 15 14 2 47 47 H 1.09002 * 109.52726 * 301.35132 * 15 14 2 48 48 H 1.08995 * 109.58688 * 65.14877 * 16 15 14 49 49 H 1.08992 * 109.59155 * 185.43629 * 16 15 14 50 50 H 0.96996 * 120.00327 * 179.97438 * 21 20 18 51 51 H 1.09001 * 109.53355 * 186.67382 * 26 17 16 52 52 H 1.09002 * 109.67913 * 66.37170 * 26 17 16 53 53 H 1.08997 * 109.49500 * 298.56089 * 27 14 2 54 54 H 1.08993 * 109.49476 * 58.62948 * 27 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 7 1.6470 4.9040 -0.0002 8 6 2.3209 6.0711 -0.0003 9 8 3.5337 6.0712 -0.0009 10 6 1.5673 7.3763 0.0002 11 6 2.5615 8.5392 -0.0007 12 6 0.6871 7.4574 -1.2487 13 6 0.6883 7.4571 1.2498 14 6 2.1976 -1.2687 0.0006 15 6 1.8277 -2.0704 1.2505 16 6 2.6214 -3.3807 1.2654 17 7 2.3856 -4.0940 0.0026 18 6 1.9518 -5.3928 0.0056 19 1 1.3718 -5.7666 0.8365 20 6 2.2576 -6.2291 -1.0592 21 7 3.2239 -5.9067 -1.8928 22 14 1.2980 -7.8122 -1.3092 23 1 0.1230 -7.5468 -2.1778 24 1 2.1721 -8.8243 -1.9547 25 1 0.8358 -8.3238 0.0060 26 6 2.6226 -3.3810 -1.2631 27 6 1.8289 -2.0708 -1.2497 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 0.7583 2.5302 -0.8892 32 1 0.7590 2.5298 0.8908 33 1 3.0068 3.5775 0.8893 34 1 3.0055 3.5775 -0.8906 35 1 0.6770 4.9040 0.0006 36 1 3.1875 8.4814 -0.8912 37 1 2.0165 9.4832 0.0001 38 1 3.1888 8.4815 0.8888 39 1 -0.0212 6.6289 -1.2484 40 1 0.1417 8.4012 -1.2481 41 1 1.3134 7.3998 -2.1390 42 1 1.3153 7.3993 2.1395 43 1 0.1436 8.4013 1.2504 44 1 -0.0201 6.6286 1.2500 45 1 3.2692 -1.0691 0.0009 46 1 0.7605 -2.2917 1.2383 47 1 2.0685 -1.4892 2.1407 48 1 3.6843 -3.1628 1.3690 49 1 2.2919 -3.9981 2.1009 50 1 3.4379 -6.4913 -2.6367 51 1 2.2921 -3.9998 -2.0974 52 1 3.6854 -3.1633 -1.3684 53 1 0.7617 -2.2921 -1.2383 54 1 2.0706 -1.4893 -2.1393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266186294.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:42 Heat of formation + Delta-G solvation = -91.115159 kcal Electronic energy + Delta-G solvation = -30147.871488 eV Core-core repulsion = 26118.676842 eV Total energy + Delta-G solvation = -4029.194646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.43065 -41.00127 -39.08197 -36.71912 -36.56441 -36.28122 -34.33424 -32.42771 -31.66802 -31.06369 -28.17931 -28.08049 -27.88829 -27.09793 -25.60344 -23.90401 -23.71573 -22.94877 -21.06192 -20.49207 -19.78826 -18.76129 -18.20907 -17.75051 -17.22133 -17.14681 -16.79118 -16.54637 -16.23411 -15.60873 -15.39629 -15.21080 -15.14416 -14.88056 -14.71291 -14.43765 -14.42304 -14.09494 -14.03853 -13.77676 -13.35362 -13.29445 -13.17979 -13.03570 -13.01181 -12.91049 -12.70949 -12.61197 -12.60292 -12.52844 -12.48133 -12.08521 -11.97579 -11.90982 -11.88883 -11.82927 -11.47176 -11.34448 -10.92402 -10.67208 -10.58006 -10.17730 -9.57784 -8.74111 -7.88439 -5.34406 1.48357 1.48782 1.58515 1.60867 1.62004 1.80520 2.32796 2.51149 3.27210 3.48438 3.62766 3.67491 3.74877 3.87179 3.94145 3.97010 4.02223 4.07255 4.28830 4.29535 4.33042 4.44541 4.49781 4.63981 4.69952 4.72632 4.75155 4.76051 4.83133 4.84404 4.85061 4.90016 4.97439 4.98597 5.02015 5.03647 5.04808 5.05700 5.13693 5.24027 5.28605 5.34905 5.37656 5.38760 5.44454 5.60049 5.62595 5.68180 6.36759 6.44840 6.54514 7.11820 7.17244 7.25673 7.81943 8.35806 9.18919 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032947 B = 0.001798 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.634589 B =15567.798151 C =15659.094177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.605 5.605 3 C 0.505 3.495 4 O -0.596 6.596 5 C -0.131 4.131 6 C 0.139 3.861 7 N -0.710 5.710 8 C 0.512 3.488 9 O -0.592 6.592 10 C -0.082 4.082 11 C -0.130 4.130 12 C -0.138 4.138 13 C -0.138 4.138 14 C 0.152 3.848 15 C -0.118 4.118 16 C 0.141 3.859 17 N -0.608 5.608 18 C -0.260 4.260 19 H 0.073 0.927 20 C -0.054 4.054 21 N -0.939 5.939 22 Si 0.971 3.029 23 H -0.282 1.282 24 H -0.299 1.299 25 H -0.266 1.266 26 C 0.179 3.821 27 C -0.126 4.126 28 H 0.076 0.924 29 H 0.106 0.894 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.047 0.953 34 H 0.045 0.955 35 H 0.420 0.580 36 H 0.043 0.957 37 H 0.088 0.912 38 H 0.043 0.957 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.003 0.997 49 H 0.064 0.936 50 H 0.250 0.750 51 H 0.061 0.939 52 H -0.014 1.014 53 H 0.072 0.928 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.366 28.112 4.524 32.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.336 5.336 3 C 0.294 3.706 4 O -0.477 6.477 5 C -0.170 4.170 6 C 0.014 3.986 7 N -0.364 5.364 8 C 0.300 3.700 9 O -0.472 6.472 10 C -0.085 4.085 11 C -0.188 4.188 12 C -0.196 4.196 13 C -0.195 4.195 14 C 0.049 3.951 15 C -0.158 4.158 16 C 0.015 3.985 17 N -0.331 5.331 18 C -0.390 4.390 19 H 0.091 0.909 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.799 3.201 23 H -0.209 1.209 24 H -0.226 1.226 25 H -0.191 1.191 26 C 0.052 3.948 27 C -0.166 4.166 28 H 0.094 0.906 29 H 0.125 0.875 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.258 0.742 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.108 0.892 44 H 0.099 0.901 45 H 0.077 0.923 46 H 0.095 0.905 47 H 0.089 0.911 48 H 0.021 0.979 49 H 0.082 0.918 50 H 0.059 0.941 51 H 0.079 0.921 52 H 0.004 0.996 53 H 0.091 0.909 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -14.859 27.988 4.419 31.995 hybrid contribution 0.414 -1.438 -0.461 1.566 sum -14.445 26.550 3.959 30.483 Atomic orbital electron populations 1.22137 0.76859 1.04894 1.03631 1.48105 1.08705 1.04763 1.72057 1.21194 0.87594 0.86597 0.75188 1.90733 1.16706 1.88043 1.52236 1.21784 0.98656 0.88325 1.08275 1.20770 0.94104 0.82329 1.01362 1.45782 1.11168 1.04474 1.74957 1.21406 0.87626 0.86792 0.74187 1.90712 1.16800 1.88412 1.51307 1.20882 0.96868 0.90628 1.00133 1.21697 0.98206 0.97307 1.01566 1.21900 0.98789 1.04767 0.94117 1.21896 0.98796 1.04763 0.94077 1.20756 0.96054 0.82730 0.95607 1.22121 1.01306 0.95818 0.96564 1.21019 0.95689 0.92756 0.89038 1.44396 1.77968 1.10076 1.00710 1.19559 1.25846 0.87532 1.06072 0.90947 1.25864 0.97954 1.01110 0.99974 1.70210 1.30277 1.39677 1.18345 0.85211 0.77781 0.78957 0.78152 1.20885 1.22597 1.19098 1.20576 0.94047 0.90570 0.89576 1.22259 1.01240 0.96425 0.96643 0.90557 0.87533 0.91117 0.84646 0.84463 0.93433 0.93642 0.74184 0.93799 0.89330 0.93743 0.90151 0.89225 0.93432 0.93359 0.89241 0.90126 0.92277 0.90531 0.91129 0.97917 0.91797 0.94139 0.92088 0.99607 0.90906 0.92575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 9.33 127.77 1.19 2.14 16 2 N -0.61 -15.01 2.76 -822.42 -2.27 -17.28 16 3 C 0.50 13.21 7.67 87.66 0.67 13.88 16 4 O -0.60 -22.67 15.31 -3.04 -0.05 -22.72 16 5 C -0.13 -1.77 4.37 29.85 0.13 -1.64 16 6 C 0.14 2.85 4.96 86.38 0.43 3.28 16 7 N -0.71 -9.92 5.34 -463.06 -2.47 -12.40 16 8 C 0.51 10.17 6.48 87.66 0.57 10.74 16 9 O -0.59 -18.76 15.98 -3.04 -0.05 -18.81 16 10 C -0.08 -0.94 0.87 -52.93 -0.05 -0.98 16 11 C -0.13 -1.83 7.76 71.98 0.56 -1.27 16 12 C -0.14 -0.89 8.37 71.98 0.60 -0.29 16 13 C -0.14 -0.86 8.37 71.98 0.60 -0.26 16 14 C 0.15 5.20 2.48 45.02 0.11 5.31 16 15 C -0.12 -3.87 5.34 30.67 0.16 -3.71 16 16 C 0.14 5.93 6.51 86.36 0.56 6.49 16 17 N -0.61 -30.63 3.01 -698.39 -2.10 -32.73 16 18 C -0.26 -14.14 9.59 84.03 0.81 -13.33 16 19 H 0.07 3.78 7.89 -2.91 -0.02 3.75 16 20 C -0.05 -3.01 4.92 84.86 0.42 -2.59 16 21 N -0.94 -56.28 11.18 21.65 0.24 -56.04 16 22 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 26 C 0.18 8.83 5.33 86.31 0.46 9.29 16 27 C -0.13 -4.71 5.31 30.67 0.16 -4.54 16 28 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.11 0.69 6.44 -2.39 -0.02 0.68 16 30 H 0.07 1.19 6.46 -2.39 -0.02 1.17 16 31 H 0.14 0.93 7.40 -2.39 -0.02 0.91 16 32 H 0.14 0.89 8.11 -2.39 -0.02 0.87 16 33 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.05 1.23 8.10 -2.39 -0.02 1.21 16 35 H 0.42 2.05 7.31 -92.71 -0.68 1.37 16 36 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.04 0.77 8.10 -2.39 -0.02 0.75 16 39 H 0.08 0.20 7.56 -2.39 -0.02 0.18 16 40 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.09 0.24 8.14 -2.39 -0.02 0.23 16 44 H 0.08 0.18 7.56 -2.38 -0.02 0.16 16 45 H 0.06 2.48 6.90 -2.39 -0.02 2.46 16 46 H 0.08 2.30 7.72 -2.39 -0.02 2.29 16 47 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.06 2.55 7.93 -2.39 -0.02 2.54 16 50 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 51 H 0.06 3.37 6.04 -2.39 -0.01 3.35 16 52 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 53 H 0.07 2.52 6.73 -2.39 -0.02 2.50 16 54 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -83.66 418.33 2.92 -80.74 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.19 Total: 10.30 kcal Atomic # 6 Polarization: 15.13 SS G_CDS: 7.39 Total: 22.52 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -6.60 Total: -118.45 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.10 Total: -41.53 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -83.66 2.92 -80.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266186294.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.371 kcal (2) G-P(sol) polarization free energy of solvation -83.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds