Wall clock time and date at job start Sat Apr 11 2020 05:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47062 * 2 1 4 4 C 1.52997 * 109.46813 * 175.00160 * 3 2 1 5 5 C 1.53004 * 109.47107 * 185.00058 * 4 3 2 6 6 N 1.46497 * 109.46943 * 295.00063 * 3 2 1 7 7 C 1.46768 * 124.34381 * 120.00561 * 6 3 2 8 8 C 1.54487 * 105.46844 * 197.01165 * 7 6 3 9 9 H 1.08996 * 110.96729 * 92.70209 * 8 7 6 10 10 C 1.50702 * 110.96459 * 216.42436 * 8 7 6 11 11 O 1.21274 * 120.00414 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99458 * 180.02562 * 10 8 7 13 13 C 1.46503 * 119.99994 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47244 * 179.97438 * 13 12 10 15 15 C 1.52993 * 109.46850 * 180.02562 * 14 13 12 16 16 H 1.09007 * 109.47246 * 55.00529 * 15 14 13 17 17 C 1.53007 * 109.46948 * 175.00012 * 15 14 13 18 18 N 1.46493 * 109.47639 * 295.00123 * 15 14 13 19 19 C 1.36938 * 120.00680 * 155.00068 * 18 15 14 20 20 H 1.08007 * 119.99788 * 359.97438 * 19 18 15 21 21 C 1.38812 * 120.00460 * 180.02562 * 19 18 15 22 22 N 1.31621 * 119.99779 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00015 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47047 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47072 * 120.00145 * 23 21 19 26 26 H 1.48494 * 109.47214 * 240.00262 * 23 21 19 27 27 C 1.54619 * 101.76557 * 334.58255 * 8 7 6 28 28 C 1.34413 * 124.35463 * 299.99759 * 6 3 2 29 29 O 1.21284 * 124.94145 * 359.56255 * 28 6 3 30 30 H 1.08993 * 109.46764 * 299.99488 * 1 2 3 31 31 H 1.09000 * 109.47034 * 60.00005 * 1 2 3 32 32 H 1.08998 * 109.47142 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46905 * 240.00166 * 2 1 3 34 34 H 1.08995 * 109.47225 * 120.00700 * 2 1 3 35 35 H 1.08996 * 109.46760 * 55.00438 * 3 2 1 36 36 H 1.08998 * 109.47539 * 305.00010 * 4 3 2 37 37 H 1.08996 * 109.47230 * 65.00258 * 4 3 2 38 38 H 1.08996 * 109.47207 * 180.02562 * 5 4 3 39 39 H 1.08998 * 109.46882 * 300.00354 * 5 4 3 40 40 H 1.09002 * 109.46876 * 60.00444 * 5 4 3 41 41 H 1.09000 * 110.25007 * 78.01166 * 7 6 3 42 42 H 1.09004 * 110.24485 * 316.00872 * 7 6 3 43 43 H 0.97001 * 119.99938 * 359.97438 * 12 10 8 44 44 H 1.08996 * 109.46923 * 300.00567 * 13 12 10 45 45 H 1.09005 * 109.46656 * 59.99776 * 13 12 10 46 46 H 1.09002 * 109.47122 * 300.00465 * 14 13 12 47 47 H 1.09002 * 109.46840 * 60.00345 * 14 13 12 48 48 H 1.08996 * 109.46995 * 179.97438 * 17 15 14 49 49 H 1.08994 * 109.47393 * 300.00163 * 17 15 14 50 50 H 1.08998 * 109.46928 * 60.00240 * 17 15 14 51 51 H 0.97001 * 119.99994 * 335.00308 * 18 15 14 52 52 H 0.96998 * 119.99917 * 179.97438 * 22 21 19 53 53 H 1.09007 * 110.48907 * 143.47513 * 27 8 7 54 54 H 1.09005 * 110.49113 * 266.11989 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5649 1.4443 0.1257 5 6 4.0646 2.8850 0.2511 6 7 1.6525 2.0975 -1.2518 7 6 0.8076 3.2949 -1.3327 8 6 0.3194 3.3565 -2.7971 9 1 -0.6418 2.8549 -2.9092 10 6 0.2403 4.7819 -3.2797 11 8 0.5433 5.6914 -2.5367 12 7 -0.1671 5.0461 -4.5369 13 6 -0.2446 6.4318 -5.0060 14 6 -0.7304 6.4529 -6.4566 15 6 -0.8106 7.9001 -6.9465 16 1 0.1548 8.3859 -6.8044 17 6 -1.1757 7.9160 -8.4323 18 7 -1.8353 8.6177 -6.1842 19 6 -1.7632 9.9788 -6.0526 20 1 -0.9506 10.5233 -6.5106 21 6 -2.7339 10.6587 -5.3298 22 7 -3.7233 9.9950 -4.7705 23 14 -2.6350 12.5154 -5.1498 24 1 -1.4360 13.0190 -5.8666 25 1 -3.8540 13.1344 -5.7295 26 1 -2.5369 12.8686 -3.7109 27 6 1.4366 2.5828 -3.5347 28 6 2.0249 1.6791 -2.4737 29 8 2.7305 0.7175 -2.6935 30 1 -0.3632 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6055 1.9815 0.8418 36 1 3.8571 0.8800 1.0112 37 1 4.0029 0.9836 -0.7597 38 1 5.1509 2.8863 0.3402 39 1 3.7723 3.4493 -0.6344 40 1 3.6265 3.3457 1.1366 41 1 1.3897 4.1843 -1.0915 42 1 -0.0416 3.2038 -0.6555 43 1 -0.4090 4.3186 -5.1313 44 1 -0.9423 6.9886 -4.3805 45 1 0.7423 6.8910 -4.9469 46 1 -0.0322 5.8962 -7.0817 47 1 -1.7171 5.9936 -6.5160 48 1 -1.2333 8.9470 -8.7812 49 1 -0.4134 7.3821 -8.9996 50 1 -2.1411 7.4302 -8.5744 51 1 -2.5649 8.1287 -5.7726 52 1 -4.4014 10.4700 -4.2651 53 1 1.0177 1.9921 -4.3495 54 1 2.1930 3.2715 -3.9114 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267130044.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:41 Heat of formation + Delta-G solvation = -104.195191 kcal Electronic energy + Delta-G solvation = -30238.779507 eV Core-core repulsion = 26209.017668 eV Total energy + Delta-G solvation = -4029.761839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.02534 -40.46470 -38.16262 -37.66450 -36.59914 -35.82072 -34.12802 -33.03330 -32.21483 -30.89397 -29.53476 -28.68989 -27.40019 -25.88958 -24.80965 -23.25882 -22.95722 -22.91453 -21.69441 -20.84565 -19.88126 -19.27150 -18.58266 -17.75817 -17.06497 -16.99308 -16.79542 -16.35542 -16.06744 -15.66805 -15.45806 -15.36328 -15.30739 -14.97569 -14.69475 -14.63262 -14.18338 -14.09715 -13.93169 -13.82004 -13.79496 -13.52297 -13.42051 -13.21899 -12.84770 -12.63764 -12.56218 -12.55420 -12.44912 -12.23747 -12.18567 -12.07748 -12.07149 -11.89056 -11.79868 -11.75378 -11.61168 -11.57260 -11.02290 -10.91846 -10.57194 -10.05983 -9.65012 -8.95306 -7.91398 -5.17401 1.46823 1.47897 1.53406 1.56788 1.60193 1.88462 2.24899 2.58174 3.19929 3.33609 3.43162 3.71356 3.75998 3.90984 3.95353 4.01009 4.05142 4.11719 4.17623 4.29208 4.32250 4.42091 4.43087 4.52378 4.54338 4.57735 4.63271 4.70105 4.76098 4.82028 4.87805 4.89125 4.92811 4.96734 5.02620 5.06365 5.08734 5.13993 5.15690 5.19967 5.27536 5.31823 5.38211 5.43280 5.49445 5.56691 5.64339 5.69506 6.14289 6.32347 6.58517 7.16041 7.27964 7.38443 8.16770 8.37820 9.32289 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.002088 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.861949 B =13404.784493 C =14025.654841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C 0.154 3.846 4 C -0.137 4.137 5 C -0.146 4.146 6 N -0.602 5.602 7 C 0.116 3.884 8 C -0.108 4.108 9 H 0.149 0.851 10 C 0.519 3.481 11 O -0.581 6.581 12 N -0.708 5.708 13 C 0.133 3.867 14 C -0.116 4.116 15 C 0.163 3.837 16 H 0.041 0.959 17 C -0.154 4.154 18 N -0.734 5.734 19 C -0.230 4.230 20 H 0.073 0.927 21 C -0.078 4.078 22 N -0.969 5.969 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.295 1.295 26 H -0.298 1.298 27 C -0.138 4.138 28 C 0.516 3.484 29 O -0.565 6.565 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.073 0.927 42 H 0.102 0.898 43 H 0.418 0.582 44 H 0.038 0.962 45 H 0.050 0.950 46 H 0.105 0.895 47 H 0.073 0.927 48 H 0.030 0.970 49 H 0.075 0.925 50 H 0.045 0.955 51 H 0.372 0.628 52 H 0.248 0.752 53 H 0.136 0.864 54 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.573 -23.282 6.269 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.174 4.174 3 C 0.052 3.948 4 C -0.175 4.175 5 C -0.204 4.204 6 N -0.335 5.335 7 C -0.008 4.008 8 C -0.129 4.129 9 H 0.166 0.834 10 C 0.305 3.695 11 O -0.461 6.461 12 N -0.360 5.360 13 C 0.008 3.992 14 C -0.154 4.154 15 C 0.054 3.946 16 H 0.059 0.941 17 C -0.214 4.214 18 N -0.375 5.375 19 C -0.362 4.362 20 H 0.091 0.909 21 C -0.270 4.270 22 N -0.620 5.620 23 Si 0.794 3.206 24 H -0.192 1.192 25 H -0.222 1.222 26 H -0.226 1.226 27 C -0.178 4.178 28 C 0.304 3.696 29 O -0.445 6.445 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.256 0.744 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.123 0.877 47 H 0.092 0.908 48 H 0.050 0.950 49 H 0.093 0.907 50 H 0.064 0.936 51 H 0.204 0.796 52 H 0.057 0.943 53 H 0.154 0.846 54 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 11.262 -22.979 6.724 26.459 hybrid contribution -0.578 1.108 0.084 1.253 sum 10.684 -21.871 6.808 25.275 Atomic orbital electron populations 1.21707 0.94699 1.01942 1.01977 1.21888 0.97011 0.95544 1.02929 1.21270 0.94744 0.93645 0.85129 1.21906 0.94984 0.97799 1.02825 1.21703 1.01115 0.96171 1.01394 1.48419 1.50360 1.28435 1.06282 1.22029 0.95372 0.87432 0.95924 1.22175 1.02775 0.92062 0.95894 0.83364 1.20622 0.76058 0.91062 0.81709 1.90747 1.50466 1.48749 1.56105 1.45857 1.67145 1.09284 1.13700 1.21098 1.00149 0.82088 0.95814 1.21907 1.02671 0.96941 0.93909 1.20466 0.91638 0.91391 0.91065 0.94075 1.22271 1.01190 1.00533 0.97387 1.42647 1.28959 1.03760 1.62119 1.19617 1.06364 0.85158 1.25045 0.90940 1.25449 0.98047 1.01730 1.01760 1.69801 1.15670 1.35523 1.41020 0.85205 0.77282 0.81346 0.76795 1.19177 1.22194 1.22557 1.22361 0.98292 0.98700 0.98453 1.21019 0.79471 0.84046 0.85021 1.90684 1.39620 1.29742 1.84406 0.91716 0.93343 0.92449 0.92752 0.89527 0.87635 0.89208 0.92800 0.92496 0.94537 0.91723 0.90894 0.88006 0.74421 0.94383 0.93126 0.87690 0.90828 0.95042 0.90653 0.93595 0.79561 0.94300 0.84612 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.80 71.98 0.71 -1.03 16 2 C -0.14 -1.88 5.36 30.60 0.16 -1.72 16 3 C 0.15 2.23 2.26 44.99 0.10 2.33 16 4 C -0.14 -2.17 5.36 30.59 0.16 -2.01 16 5 C -0.15 -2.39 9.80 71.98 0.71 -1.69 16 6 N -0.60 -9.91 1.74 -794.03 -1.38 -11.29 16 7 C 0.12 1.84 6.66 86.83 0.58 2.42 16 8 C -0.11 -1.54 3.54 -10.48 -0.04 -1.57 16 9 H 0.15 1.26 8.14 -2.39 -0.02 1.24 16 10 C 0.52 12.12 7.06 87.66 0.62 12.74 16 11 O -0.58 -19.88 15.50 -3.01 -0.05 -19.93 16 12 N -0.71 -14.82 5.56 -463.05 -2.57 -17.39 16 13 C 0.13 3.94 5.56 86.38 0.48 4.42 16 14 C -0.12 -2.99 4.87 30.59 0.15 -2.84 16 15 C 0.16 5.77 2.89 44.99 0.13 5.90 16 16 H 0.04 1.52 8.08 -2.38 -0.02 1.51 16 17 C -0.15 -4.84 9.49 71.98 0.68 -4.15 16 18 N -0.73 -35.12 4.57 -322.94 -1.48 -36.60 16 19 C -0.23 -12.53 9.93 84.03 0.83 -11.70 16 20 H 0.07 3.84 7.83 -2.91 -0.02 3.82 16 21 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 22 N -0.97 -59.17 13.06 21.65 0.28 -58.89 16 23 Si 0.96 46.62 29.55 68.60 2.03 48.65 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 26 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 27 C -0.14 -1.91 6.41 30.58 0.20 -1.71 16 28 C 0.52 10.17 7.37 87.90 0.65 10.82 16 29 O -0.56 -15.11 15.02 -3.04 -0.05 -15.15 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.05 0.63 7.75 -2.39 -0.02 0.61 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 1.06 6.65 -2.39 -0.02 1.04 16 34 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.11 1.20 8.07 -2.39 -0.02 1.18 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.15 6.62 -2.39 -0.02 1.14 16 38 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.04 0.72 7.75 -2.39 -0.02 0.70 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.53 6.96 -2.39 -0.02 1.51 16 42 H 0.10 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.42 5.29 8.47 -92.71 -0.79 4.50 16 44 H 0.04 1.52 7.75 -2.39 -0.02 1.50 16 45 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.10 1.90 8.14 -2.39 -0.02 1.89 16 47 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 48 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.37 19.23 7.80 -92.71 -0.72 18.51 16 52 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 53 H 0.14 1.18 8.14 -2.38 -0.02 1.16 16 54 H 0.10 1.58 7.89 -2.38 -0.02 1.56 16 Total: -1.00 -76.09 430.25 2.74 -73.35 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: -0.63 Total: 31.02 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 6.59 Total: 6.22 kcal Atomic # 7 Polarization: -119.02 SS G_CDS: -5.15 Total: -124.16 kcal Atomic # 8 Polarization: -34.99 SS G_CDS: -0.09 Total: -35.08 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -76.09 2.74 -73.35 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267130044.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.845 kcal (2) G-P(sol) polarization free energy of solvation -76.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds