Wall clock time and date at job start Sat Apr 11 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47376 * 2 1 4 4 C 1.52998 * 109.47205 * 175.00186 * 3 2 1 5 5 C 1.53000 * 109.46864 * 185.00163 * 4 3 2 6 6 N 1.46501 * 109.47120 * 295.00100 * 3 2 1 7 7 C 1.46765 * 124.34643 * 119.99404 * 6 3 2 8 8 C 1.54485 * 105.47026 * 162.96443 * 7 6 3 9 9 H 1.08999 * 110.96810 * 143.57550 * 8 7 6 10 10 C 1.50696 * 110.96839 * 267.29803 * 8 7 6 11 11 O 1.21282 * 120.00743 * 359.97438 * 10 8 7 12 12 N 1.34784 * 119.99852 * 179.97438 * 10 8 7 13 13 C 1.46503 * 119.99755 * 179.97438 * 12 10 8 14 14 C 1.53007 * 109.46656 * 180.02562 * 13 12 10 15 15 C 1.53004 * 109.46847 * 180.02562 * 14 13 12 16 16 H 1.09002 * 109.47194 * 305.00379 * 15 14 13 17 17 C 1.52995 * 109.46864 * 184.99976 * 15 14 13 18 18 N 1.46499 * 109.46824 * 65.00150 * 15 14 13 19 19 C 1.36935 * 119.99926 * 204.99960 * 18 15 14 20 20 H 1.08005 * 119.99877 * 359.97438 * 19 18 15 21 21 C 1.38811 * 120.00369 * 179.73019 * 19 18 15 22 22 N 1.31614 * 120.00468 * 180.02562 * 21 19 18 23 23 Si 1.86801 * 119.99699 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47209 * 90.00536 * 23 21 19 25 25 H 1.48506 * 109.47294 * 210.00384 * 23 21 19 26 26 H 1.48501 * 109.47275 * 330.00287 * 23 21 19 27 27 C 1.54624 * 101.76516 * 25.41756 * 8 7 6 28 28 C 1.34418 * 124.35228 * 299.97568 * 6 3 2 29 29 O 1.21284 * 124.93754 * 0.46380 * 28 6 3 30 30 H 1.08994 * 109.47511 * 59.99719 * 1 2 3 31 31 H 1.09003 * 109.47302 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47078 * 299.99774 * 1 2 3 33 33 H 1.09004 * 109.47078 * 240.00226 * 2 1 3 34 34 H 1.09001 * 109.47177 * 120.00123 * 2 1 3 35 35 H 1.08998 * 109.46723 * 55.00034 * 3 2 1 36 36 H 1.09001 * 109.47278 * 304.99780 * 4 3 2 37 37 H 1.08998 * 109.47460 * 65.00223 * 4 3 2 38 38 H 1.09001 * 109.47423 * 60.00141 * 5 4 3 39 39 H 1.09001 * 109.47568 * 179.97438 * 5 4 3 40 40 H 1.08999 * 109.47345 * 299.99706 * 5 4 3 41 41 H 1.09003 * 110.24424 * 43.97140 * 7 6 3 42 42 H 1.08995 * 110.32485 * 282.00575 * 7 6 3 43 43 H 0.96993 * 119.99733 * 0.02562 * 12 10 8 44 44 H 1.09007 * 109.46861 * 60.00714 * 13 12 10 45 45 H 1.08991 * 109.47469 * 300.00287 * 13 12 10 46 46 H 1.08998 * 109.46979 * 60.00409 * 14 13 12 47 47 H 1.08998 * 109.47071 * 300.00033 * 14 13 12 48 48 H 1.09007 * 109.47281 * 60.00379 * 17 15 14 49 49 H 1.09003 * 109.47025 * 179.97438 * 17 15 14 50 50 H 1.09002 * 109.47544 * 300.00188 * 17 15 14 51 51 H 0.97005 * 120.00261 * 25.00085 * 18 15 14 52 52 H 0.97000 * 120.00663 * 179.97438 * 22 21 19 53 53 H 1.09002 * 110.48553 * 93.88067 * 27 8 7 54 54 H 1.08994 * 110.49010 * 216.52463 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5648 1.4442 0.1257 5 6 4.0644 2.8849 0.2511 6 7 1.6524 2.0974 -1.2518 7 6 0.8075 3.2948 -1.3328 8 6 1.0294 3.8604 -2.7531 9 1 0.1060 4.2766 -3.1559 10 6 2.1291 4.8908 -2.7575 11 8 2.7035 5.1692 -1.7263 12 7 2.4743 5.5030 -3.9076 13 6 3.5429 6.5051 -3.9118 14 6 3.7336 7.0414 -5.3321 15 6 4.8501 8.0875 -5.3366 16 1 4.6237 8.8637 -4.6056 17 6 4.9570 8.7132 -6.7286 18 7 6.1212 7.4466 -4.9903 19 6 7.1322 8.1857 -4.4366 20 1 6.9927 9.2413 -4.2556 21 6 8.3346 7.5773 -4.1034 22 7 9.3062 8.2877 -3.5707 23 14 8.5731 5.7501 -4.4096 24 1 9.1323 5.5450 -5.7700 25 1 9.5117 5.1974 -3.4002 26 1 7.2652 5.0552 -4.3021 27 6 1.4537 2.5949 -3.5337 28 6 2.0252 1.6793 -2.4737 29 8 2.7184 0.7088 -2.6942 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6054 1.9814 0.8418 36 1 3.8571 0.8799 1.0113 37 1 4.0029 0.9835 -0.7597 38 1 3.6264 3.3456 1.1365 39 1 5.1507 2.8863 0.3411 40 1 3.7722 3.4492 -0.6344 41 1 1.1149 4.0247 -0.5839 42 1 -0.2401 3.0290 -1.1920 43 1 2.0147 5.2806 -4.7323 44 1 4.4709 6.0481 -3.5679 45 1 3.2740 7.3259 -3.2470 46 1 2.8056 7.4984 -5.6755 47 1 4.0024 6.2207 -5.9972 48 1 4.0113 9.1901 -6.9862 49 1 5.7521 9.4588 -6.7317 50 1 5.1834 7.9370 -7.4596 51 1 6.2466 6.4986 -5.1533 52 1 10.1462 7.8625 -3.3375 53 1 0.5892 2.1332 -4.0108 54 1 2.2137 2.8409 -4.2753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267130046.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:48 Heat of formation + Delta-G solvation = -102.518587 kcal Electronic energy + Delta-G solvation = -31231.446826 eV Core-core repulsion = 27201.757690 eV Total energy + Delta-G solvation = -4029.689136 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.07130 -40.32942 -38.31252 -37.65941 -36.59858 -35.85773 -34.21150 -33.06059 -32.24928 -31.43536 -29.65204 -28.64605 -27.39098 -25.72570 -24.74839 -23.26943 -22.97196 -22.91589 -21.77186 -21.00357 -19.89804 -19.65823 -18.55706 -17.85548 -17.11806 -16.96608 -16.80817 -16.33181 -16.06600 -15.81248 -15.51233 -15.40919 -15.20205 -14.96989 -14.73912 -14.64528 -14.37426 -14.02470 -13.96058 -13.90249 -13.69624 -13.56529 -13.47991 -13.27230 -12.94768 -12.84691 -12.62277 -12.55705 -12.52624 -12.31184 -12.21439 -12.10821 -11.99613 -11.92291 -11.82491 -11.80249 -11.78924 -11.60030 -11.03147 -10.79040 -10.61488 -10.05556 -9.61294 -9.30822 -8.04368 -5.34868 1.31058 1.34553 1.40026 1.57713 1.63047 2.05307 2.20160 2.43987 3.28392 3.29005 3.35744 3.62356 3.68835 3.73444 3.92597 3.98256 3.98962 4.09081 4.19152 4.28979 4.30048 4.38950 4.43333 4.51039 4.56083 4.59961 4.65513 4.70575 4.75340 4.77545 4.84602 4.86573 4.89052 4.95382 4.97052 5.02272 5.08579 5.08814 5.12786 5.19109 5.20479 5.32671 5.37270 5.37672 5.50578 5.59723 5.72318 5.78880 6.21113 6.22146 6.60935 7.08303 7.20100 7.32379 7.86621 8.02401 9.17864 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012939 B = 0.003025 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.484809 B = 9254.326331 C =10447.231603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C 0.160 3.840 4 C -0.135 4.135 5 C -0.149 4.149 6 N -0.602 5.602 7 C 0.111 3.889 8 C -0.108 4.108 9 H 0.177 0.823 10 C 0.503 3.497 11 O -0.573 6.573 12 N -0.712 5.712 13 C 0.130 3.870 14 C -0.118 4.118 15 C 0.167 3.833 16 H 0.043 0.957 17 C -0.155 4.155 18 N -0.752 5.752 19 C -0.217 4.217 20 H 0.059 0.941 21 C -0.064 4.064 22 N -0.985 5.985 23 Si 0.946 3.054 24 H -0.274 1.274 25 H -0.303 1.303 26 H -0.262 1.262 27 C -0.139 4.139 28 C 0.500 3.500 29 O -0.579 6.579 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.034 0.966 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.419 0.581 44 H 0.030 0.970 45 H 0.053 0.947 46 H 0.113 0.887 47 H 0.077 0.923 48 H 0.079 0.921 49 H 0.027 0.973 50 H 0.053 0.947 51 H 0.362 0.638 52 H 0.255 0.745 53 H 0.154 0.846 54 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.907 -14.109 1.370 33.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C 0.058 3.942 4 C -0.173 4.173 5 C -0.206 4.206 6 N -0.335 5.335 7 C -0.011 4.011 8 C -0.129 4.129 9 H 0.194 0.806 10 C 0.290 3.710 11 O -0.452 6.452 12 N -0.365 5.365 13 C 0.005 3.995 14 C -0.157 4.157 15 C 0.059 3.941 16 H 0.061 0.939 17 C -0.214 4.214 18 N -0.395 5.395 19 C -0.348 4.348 20 H 0.077 0.923 21 C -0.256 4.256 22 N -0.637 5.637 23 Si 0.775 3.225 24 H -0.200 1.200 25 H -0.231 1.231 26 H -0.187 1.187 27 C -0.179 4.179 28 C 0.289 3.711 29 O -0.459 6.459 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.099 0.901 42 H 0.138 0.862 43 H 0.256 0.744 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.131 0.869 47 H 0.096 0.904 48 H 0.098 0.902 49 H 0.046 0.954 50 H 0.072 0.928 51 H 0.195 0.805 52 H 0.064 0.936 53 H 0.172 0.828 54 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -29.042 -14.232 2.152 32.414 hybrid contribution 1.517 -0.768 -0.176 1.710 sum -27.525 -15.000 1.976 31.409 Atomic orbital electron populations 1.21667 0.93798 1.02011 1.02271 1.21881 0.97735 0.95278 1.02538 1.21133 0.93530 0.93884 0.85656 1.21890 0.96333 0.97007 1.02111 1.21725 0.99822 0.96788 1.02267 1.48371 1.50196 1.29122 1.05770 1.22272 0.96285 0.86019 0.96535 1.22408 0.99656 0.93132 0.97744 0.80569 1.21102 0.84508 0.82145 0.83224 1.90732 1.55424 1.65301 1.33752 1.45857 1.37903 1.41379 1.11342 1.21100 0.89269 0.90712 0.98403 1.21961 0.99841 0.99207 0.94646 1.20459 0.84152 0.94198 0.95297 0.93929 1.22249 1.01247 1.00388 0.97553 1.42888 1.13103 1.07861 1.75689 1.19042 0.92237 0.93206 1.30345 0.92271 1.25378 0.96453 1.01584 1.02149 1.69858 1.05885 1.36829 1.51124 0.85537 0.77672 0.81856 0.77406 1.20047 1.23060 1.18700 1.22433 1.04874 0.93663 0.96912 1.21446 0.79152 0.84794 0.85691 1.90679 1.40131 1.30480 1.84636 0.92821 0.92486 0.91354 0.93219 0.90019 0.87472 0.89634 0.93779 0.91875 0.94630 0.93308 0.90108 0.86229 0.74369 0.95175 0.92847 0.86900 0.90396 0.90196 0.95369 0.92829 0.80510 0.93568 0.82836 0.88315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.80 71.98 0.71 -0.94 16 2 C -0.14 -2.29 5.36 30.59 0.16 -2.13 16 3 C 0.16 2.99 2.25 44.99 0.10 3.09 16 4 C -0.14 -3.29 5.36 30.59 0.16 -3.13 16 5 C -0.15 -4.24 9.80 71.98 0.71 -3.53 16 6 N -0.60 -11.18 1.74 -794.04 -1.38 -12.56 16 7 C 0.11 1.36 6.63 86.83 0.58 1.94 16 8 C -0.11 -1.14 3.54 -10.48 -0.04 -1.18 16 9 H 0.18 0.07 8.14 -2.39 -0.02 0.05 16 10 C 0.50 10.85 7.08 87.65 0.62 11.47 16 11 O -0.57 -18.52 13.81 -3.04 -0.04 -18.56 16 12 N -0.71 -13.61 5.48 -463.04 -2.54 -16.14 16 13 C 0.13 3.64 5.56 86.38 0.48 4.12 16 14 C -0.12 -2.78 4.87 30.60 0.15 -2.63 16 15 C 0.17 5.70 2.89 44.99 0.13 5.83 16 16 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 17 C -0.15 -4.66 9.49 71.98 0.68 -3.98 16 18 N -0.75 -34.32 4.38 -322.94 -1.41 -35.73 16 19 C -0.22 -12.46 10.41 84.03 0.87 -11.58 16 20 H 0.06 3.71 8.06 -2.91 -0.02 3.69 16 21 C -0.06 -3.93 5.50 84.86 0.47 -3.46 16 22 N -0.99 -65.21 13.97 21.65 0.30 -64.91 16 23 Si 0.95 48.27 27.73 68.60 1.90 50.18 16 24 H -0.27 -13.42 7.11 99.48 0.71 -12.72 16 25 H -0.30 -15.98 7.11 99.48 0.71 -15.27 16 26 H -0.26 -12.46 6.52 99.48 0.65 -11.81 16 27 C -0.14 -1.75 6.40 30.59 0.20 -1.55 16 28 C 0.50 11.45 7.37 87.90 0.65 12.10 16 29 O -0.58 -18.70 15.02 -3.04 -0.05 -18.75 16 30 H 0.05 0.63 7.75 -2.39 -0.02 0.61 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.05 1.16 6.62 -2.38 -0.02 1.14 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.11 1.57 8.07 -2.39 -0.02 1.56 16 36 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.04 1.37 6.65 -2.39 -0.02 1.35 16 38 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.05 1.64 5.95 -2.39 -0.01 1.62 16 41 H 0.08 1.34 7.02 -2.39 -0.02 1.32 16 42 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.42 4.30 8.47 -92.71 -0.79 3.52 16 44 H 0.03 1.15 7.75 -2.38 -0.02 1.13 16 45 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 48 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 49 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 51 H 0.36 16.25 5.66 -92.70 -0.52 15.73 16 52 H 0.26 16.22 8.31 -92.71 -0.77 15.45 16 53 H 0.15 0.75 8.14 -2.39 -0.02 0.74 16 54 H 0.10 1.43 7.84 -2.39 -0.02 1.41 16 Total: -1.00 -87.38 423.55 2.92 -84.45 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: -0.49 Total: 27.58 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: 6.63 Total: 4.44 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -5.03 Total: -129.34 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.09 Total: -37.31 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 1.90 Total: 50.18 kcal Total: -87.38 2.92 -84.45 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267130046.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.065 kcal (2) G-P(sol) polarization free energy of solvation -87.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds