Wall clock time and date at job start Sat Apr 11 2020 05:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47055 * 2 1 4 4 C 1.53004 * 109.46861 * 240.00072 * 2 1 3 5 5 C 1.50703 * 109.46985 * 120.00220 * 2 1 3 6 6 O 1.21273 * 120.00011 * 359.97438 * 5 2 1 7 7 N 1.34776 * 119.99745 * 180.02562 * 5 2 1 8 8 C 1.46498 * 119.99936 * 179.97438 * 7 5 2 9 9 C 1.52999 * 109.47176 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.47169 * 179.97438 * 9 8 7 11 11 O 1.21273 * 119.99827 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99929 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99936 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47176 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46947 * 180.02562 * 14 13 12 16 16 H 1.08996 * 110.64188 * 303.30672 * 15 14 13 17 17 C 1.55167 * 110.86767 * 180.02562 * 15 14 13 18 18 C 1.55140 * 101.48205 * 205.89724 * 17 15 14 19 19 N 1.47426 * 104.71884 * 37.29810 * 18 17 15 20 20 C 1.36939 * 125.64553 * 155.81775 * 19 18 17 21 21 H 1.07997 * 119.99728 * 179.41197 * 20 19 18 22 22 C 1.38815 * 119.99845 * 359.69111 * 20 19 18 23 23 N 1.31619 * 119.99884 * 359.72042 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.72678 * 22 20 19 25 25 H 1.48493 * 109.47326 * 89.99909 * 24 22 20 26 26 H 1.48506 * 109.46545 * 209.99659 * 24 22 20 27 27 H 1.48498 * 109.47210 * 329.99370 * 24 22 20 28 28 C 1.47017 * 108.70306 * 335.54918 * 19 18 17 29 29 H 1.08993 * 109.47398 * 299.99763 * 1 2 3 30 30 H 1.09006 * 109.47379 * 59.99976 * 1 2 3 31 31 H 1.09000 * 109.47077 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47047 * 300.00227 * 3 2 1 34 34 H 1.08997 * 109.47301 * 59.99950 * 3 2 1 35 35 H 1.09000 * 109.46827 * 299.99851 * 4 2 1 36 36 H 1.08998 * 109.47398 * 60.00069 * 4 2 1 37 37 H 1.09000 * 109.46977 * 179.97438 * 4 2 1 38 38 H 0.97003 * 119.99852 * 0.02562 * 7 5 2 39 39 H 1.09000 * 109.46959 * 60.00164 * 8 7 5 40 40 H 1.08997 * 109.46994 * 299.99977 * 8 7 5 41 41 H 1.09000 * 109.47077 * 60.00194 * 9 8 7 42 42 H 1.08993 * 109.47398 * 300.00273 * 9 8 7 43 43 H 0.97003 * 119.99852 * 0.02562 * 12 10 9 44 44 H 1.09000 * 109.46959 * 60.00164 * 13 12 10 45 45 H 1.08997 * 109.46994 * 299.99977 * 13 12 10 46 46 H 1.09000 * 109.47077 * 60.00194 * 14 13 12 47 47 H 1.08997 * 109.47106 * 299.99867 * 14 13 12 48 48 H 1.08997 * 111.00435 * 324.13709 * 17 15 14 49 49 H 1.08997 * 111.00229 * 87.95375 * 17 15 14 50 50 H 1.08994 * 110.49646 * 278.45386 * 18 17 15 51 51 H 1.09000 * 110.33762 * 156.05529 * 18 17 15 52 52 H 0.97000 * 119.99517 * 180.02562 * 23 22 20 53 53 H 1.09004 * 109.87978 * 120.71058 * 28 19 18 54 54 H 1.09007 * 109.88391 * 241.86814 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 8 1.2442 -1.1710 2.0289 7 7 3.3574 -0.8332 1.4440 8 6 3.8457 -1.5233 2.6404 9 6 5.3757 -1.5223 2.6410 10 6 5.8781 -2.2317 3.8720 11 8 5.0900 -2.6931 4.6700 12 7 7.2031 -2.3543 4.0856 13 6 7.6915 -3.0444 5.2820 14 6 9.2215 -3.0433 5.2826 15 6 9.7314 -3.7646 6.5319 16 1 9.3307 -3.3014 7.4335 17 6 11.2826 -3.7818 6.5656 18 6 11.5588 -5.0444 7.4238 19 7 10.5196 -6.0080 7.0177 20 6 10.6080 -7.3702 7.1267 21 1 9.7845 -7.9919 6.8080 22 6 11.7538 -7.9515 7.6521 23 7 12.7575 -7.1937 8.0404 24 14 11.8713 -9.8093 7.8078 25 1 12.4545 -10.3744 6.5646 26 1 12.7381 -10.1553 8.9630 27 1 10.5148 -10.3750 8.0199 28 6 9.3702 -5.2640 6.4823 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2074 -2.1393 37 1 3.1299 -0.7209 -1.2496 38 1 3.9877 -0.4638 0.8058 39 1 3.4827 -2.5511 2.6405 40 1 3.4821 -1.0094 3.5301 41 1 5.7384 -0.4944 2.6410 42 1 5.7397 -2.0359 1.7512 43 1 7.8334 -1.9856 3.4471 44 1 7.3285 -4.0722 5.2822 45 1 7.3278 -2.5305 6.1717 46 1 9.5840 -2.0153 5.2827 47 1 9.5855 -3.5569 4.3929 48 1 11.6941 -3.8897 5.5621 49 1 11.6728 -2.8876 7.0516 50 1 11.4672 -4.8122 8.4848 51 1 12.5503 -5.4413 7.2056 52 1 13.5583 -7.6000 8.4073 53 1 9.1805 -5.5658 5.4522 54 1 8.4883 -5.4533 7.0945 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267551136.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:58 Heat of formation + Delta-G solvation = -104.513683 kcal Electronic energy + Delta-G solvation = -28768.489092 eV Core-core repulsion = 24738.713442 eV Total energy + Delta-G solvation = -4029.775650 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.30671 -40.71085 -39.41292 -36.76346 -36.54284 -36.18039 -34.76345 -32.74435 -31.77669 -30.60055 -28.28447 -28.18569 -27.97569 -26.71428 -25.43131 -23.65505 -23.04378 -21.96426 -21.64137 -20.79644 -20.25831 -18.90169 -18.17460 -17.74756 -17.24478 -16.99015 -16.80891 -16.70404 -16.51827 -16.16726 -15.57720 -15.37928 -15.18264 -14.79937 -14.69443 -14.40236 -14.27988 -14.10544 -13.77189 -13.51634 -13.34493 -13.30078 -13.11657 -13.04061 -13.00173 -12.84119 -12.80762 -12.71097 -12.60957 -12.47433 -12.20568 -12.01963 -11.89438 -11.83620 -11.77817 -11.56953 -11.43040 -11.25401 -10.98828 -10.75647 -10.69134 -10.19333 -10.06537 -8.88214 -7.78182 -5.22839 1.44446 1.46390 1.55216 1.61117 1.63353 1.88181 2.46863 2.48537 3.30262 3.55528 3.68184 3.74337 3.76450 3.86745 3.93849 3.95531 3.99049 4.07381 4.19051 4.28763 4.34260 4.37607 4.52495 4.64413 4.71906 4.73023 4.74790 4.75625 4.83319 4.84447 4.89208 4.90656 4.96863 4.98321 5.03075 5.04448 5.13202 5.20105 5.23736 5.27606 5.34553 5.37000 5.39040 5.43289 5.46756 5.52190 5.69423 5.83542 6.32453 6.51416 6.59716 7.11192 7.24061 7.29746 7.79198 8.42737 9.22908 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024328 B = 0.001454 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.657387 B =19255.212684 C =19850.029276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.139 4.139 5 C 0.512 3.488 6 O -0.592 6.592 7 N -0.711 5.711 8 C 0.137 3.863 9 C -0.134 4.134 10 C 0.507 3.493 11 O -0.595 6.595 12 N -0.712 5.712 13 C 0.121 3.879 14 C -0.098 4.098 15 C -0.086 4.086 16 H 0.076 0.924 17 C -0.120 4.120 18 C 0.147 3.853 19 N -0.629 5.629 20 C -0.243 4.243 21 H 0.075 0.925 22 C -0.067 4.067 23 N -0.947 5.947 24 Si 0.980 3.020 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.275 1.275 28 C 0.134 3.866 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.420 0.580 39 H 0.045 0.955 40 H 0.048 0.952 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.421 0.579 44 H 0.044 0.956 45 H 0.058 0.942 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.086 0.914 50 H -0.018 1.018 51 H 0.073 0.927 52 H 0.247 0.753 53 H 0.027 0.973 54 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.830 23.545 -23.667 36.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.085 4.085 3 C -0.195 4.195 4 C -0.196 4.196 5 C 0.300 3.700 6 O -0.472 6.472 7 N -0.364 5.364 8 C 0.012 3.988 9 C -0.174 4.174 10 C 0.294 3.706 11 O -0.475 6.475 12 N -0.364 5.364 13 C -0.003 4.003 14 C -0.136 4.136 15 C -0.106 4.106 16 H 0.094 0.906 17 C -0.158 4.158 18 C 0.022 3.978 19 N -0.355 5.355 20 C -0.372 4.372 21 H 0.093 0.907 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.808 3.192 25 H -0.209 1.209 26 H -0.218 1.218 27 H -0.200 1.200 28 C 0.009 3.991 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.107 0.893 37 H 0.099 0.901 38 H 0.258 0.742 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.158 0.842 42 H 0.154 0.846 43 H 0.259 0.741 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.119 0.881 47 H 0.095 0.905 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.000 1.000 51 H 0.091 0.909 52 H 0.057 0.943 53 H 0.044 0.956 54 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges -15.788 22.729 -22.463 35.643 hybrid contribution 0.456 -1.370 0.617 1.570 sum -15.332 21.359 -21.846 34.184 Atomic orbital electron populations 1.21698 0.92880 1.01828 1.02424 1.20872 0.97475 0.97620 0.92540 1.21894 1.02419 0.91870 1.03343 1.21900 1.02408 0.99801 0.95487 1.21375 0.82184 0.78717 0.87740 1.90710 1.56834 1.50566 1.49098 1.45787 1.07112 1.58341 1.25198 1.20801 0.93649 0.96757 0.87621 1.21748 0.94100 1.04768 0.96761 1.21102 0.82318 0.79297 0.87877 1.90763 1.56673 1.50742 1.49356 1.45857 1.06924 1.58103 1.25561 1.21262 0.94804 0.96438 0.87808 1.21612 0.92415 1.02259 0.97269 1.22030 0.96083 0.93480 0.98958 0.90579 1.22906 0.94737 0.97832 1.00366 1.21846 0.94853 0.87877 0.93249 1.44871 1.15664 1.01886 1.73090 1.19454 1.00512 0.82383 1.34853 0.90697 1.25621 0.96381 1.02524 1.01382 1.70054 1.06578 1.34032 1.49030 0.85062 0.77446 0.79613 0.77113 1.20863 1.21785 1.19987 1.21567 0.89488 0.92257 0.95817 0.93698 0.89428 0.93818 0.90071 0.89363 0.93311 0.93456 0.89336 0.90106 0.74166 0.93665 0.93326 0.84227 0.84649 0.74113 0.93757 0.92374 0.88065 0.90486 0.91159 0.89548 1.00028 0.90905 0.94301 0.95551 0.97525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 7.76 71.98 0.56 -1.13 16 2 C -0.08 -0.83 0.87 -52.93 -0.05 -0.87 16 3 C -0.14 -0.67 8.37 71.98 0.60 -0.07 16 4 C -0.14 -0.74 8.37 71.98 0.60 -0.13 16 5 C 0.51 9.24 6.48 87.66 0.57 9.80 16 6 O -0.59 -17.65 15.98 -3.01 -0.05 -17.70 16 7 N -0.71 -8.27 5.34 -463.08 -2.47 -10.74 16 8 C 0.14 2.35 4.96 86.38 0.43 2.78 16 9 C -0.13 -1.19 5.81 29.85 0.17 -1.02 16 10 C 0.51 10.00 7.83 87.66 0.69 10.69 16 11 O -0.59 -19.14 15.98 -3.01 -0.05 -19.19 16 12 N -0.71 -11.29 5.56 -463.08 -2.57 -13.86 16 13 C 0.12 2.76 5.52 86.38 0.48 3.24 16 14 C -0.10 -2.03 4.73 30.59 0.14 -1.89 16 15 C -0.09 -2.69 2.97 -9.60 -0.03 -2.71 16 16 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 17 C -0.12 -4.14 6.55 32.07 0.21 -3.93 16 18 C 0.15 7.28 5.91 86.94 0.51 7.80 16 19 N -0.63 -33.42 3.39 -691.54 -2.35 -35.76 16 20 C -0.24 -14.14 10.27 84.03 0.86 -13.28 16 21 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 22 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 23 N -0.95 -57.23 10.08 21.65 0.22 -57.02 16 24 Si 0.98 46.69 29.55 68.60 2.03 48.72 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 27 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 28 C 0.13 5.62 5.98 86.73 0.52 6.14 16 29 H 0.04 0.73 8.10 -2.39 -0.02 0.71 16 30 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 32 H 0.08 0.06 7.56 -2.39 -0.02 0.04 16 33 H 0.09 0.15 8.14 -2.38 -0.02 0.13 16 34 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 35 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.08 0.10 7.57 -2.39 -0.02 0.08 16 38 H 0.42 1.12 7.31 -92.71 -0.68 0.45 16 39 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 40 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 41 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 42 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 43 H 0.42 3.10 8.47 -92.71 -0.79 2.32 16 44 H 0.04 1.28 7.49 -2.39 -0.02 1.26 16 45 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.08 1.56 8.06 -2.39 -0.02 1.55 16 48 H 0.07 2.30 8.05 -2.39 -0.02 2.28 16 49 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 50 H -0.02 -0.99 8.14 -2.39 -0.02 -1.00 16 51 H 0.07 4.11 5.85 -2.39 -0.01 4.10 16 52 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 53 H 0.03 1.09 7.76 -2.39 -0.02 1.07 16 54 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 Total: -1.00 -88.02 427.60 0.91 -87.12 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -0.59 Total: 6.42 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.74 Total: 12.01 kcal Atomic # 7 Polarization: -110.21 SS G_CDS: -7.17 Total: -117.38 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -0.10 Total: -36.89 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -88.02 0.91 -87.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267551136.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.397 kcal (2) G-P(sol) polarization free energy of solvation -88.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds