Wall clock time and date at job start Sat Apr 11 2020 05:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46978 * 2 1 4 4 C 1.52993 * 109.47211 * 120.00029 * 2 1 3 5 5 C 1.50697 * 109.47257 * 175.00084 * 4 2 1 6 6 O 1.21290 * 120.00102 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00197 * 179.97438 * 5 4 2 8 8 C 1.46925 * 120.62853 * 179.97438 * 7 5 4 9 9 C 1.53199 * 108.89167 * 126.34750 * 8 7 5 10 10 C 1.53344 * 109.15012 * 54.57381 * 9 8 7 11 11 C 1.53000 * 109.41085 * 178.68492 * 10 9 8 12 12 N 1.46901 * 109.47265 * 185.55541 * 11 10 9 13 13 C 1.46900 * 110.99796 * 75.83028 * 12 11 10 14 14 C 1.46903 * 110.99595 * 199.78544 * 12 11 10 15 15 C 1.50700 * 109.46756 * 170.00050 * 14 12 11 16 16 O 1.21288 * 120.00274 * 0.02562 * 15 14 12 17 17 N 1.34785 * 119.99708 * 179.97438 * 15 14 12 18 18 C 1.37100 * 119.99624 * 179.97438 * 17 15 14 19 19 H 1.08001 * 120.00018 * 359.97438 * 18 17 15 20 20 C 1.38951 * 119.99741 * 179.97438 * 18 17 15 21 21 N 1.31410 * 119.99882 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99810 * 179.97438 * 20 18 17 23 23 H 1.48490 * 109.47130 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46656 * 120.00778 * 22 20 18 25 25 H 1.48503 * 109.46800 * 240.00330 * 22 20 18 26 26 C 1.53045 * 109.61087 * 298.71842 * 10 9 8 27 27 C 1.46918 * 120.62848 * 0.02562 * 7 5 4 28 28 H 1.08998 * 109.46910 * 300.00106 * 1 2 3 29 29 H 1.08997 * 109.46978 * 59.99766 * 1 2 3 30 30 H 1.08994 * 109.46881 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46927 * 240.00680 * 2 1 3 32 32 H 1.08992 * 109.47095 * 60.00494 * 3 2 1 33 33 H 1.08998 * 109.46852 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47047 * 300.00106 * 3 2 1 35 35 H 1.08997 * 109.47208 * 55.00096 * 4 2 1 36 36 H 1.08996 * 109.47071 * 294.99878 * 4 2 1 37 37 H 1.09005 * 109.59019 * 246.19743 * 8 7 5 38 38 H 1.09003 * 109.59014 * 6.48616 * 8 7 5 39 39 H 1.09001 * 109.49815 * 174.65946 * 9 8 7 40 40 H 1.09005 * 109.49329 * 294.75518 * 9 8 7 41 41 H 1.09006 * 109.43482 * 58.75706 * 10 9 8 42 42 H 1.09001 * 109.46828 * 305.55414 * 11 10 9 43 43 H 1.08998 * 109.47126 * 65.55256 * 11 10 9 44 44 H 1.09007 * 109.47080 * 65.78533 * 13 12 11 45 45 H 1.09002 * 109.46564 * 185.78288 * 13 12 11 46 46 H 1.08996 * 109.47064 * 305.78022 * 13 12 11 47 47 H 1.08998 * 109.47171 * 289.99779 * 14 12 11 48 48 H 1.08994 * 109.47530 * 49.99893 * 14 12 11 49 49 H 0.96994 * 119.99747 * 359.97438 * 17 15 14 50 50 H 0.97005 * 119.99994 * 179.97438 * 21 20 18 51 51 H 1.09005 * 109.49588 * 301.42077 * 26 10 9 52 52 H 1.08996 * 109.52536 * 181.34239 * 26 10 9 53 53 H 1.08997 * 109.59049 * 353.37116 * 27 7 5 54 54 H 1.08998 * 109.58754 * 113.65868 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.8293 1.1888 6 8 4.1450 -0.3747 0.2398 7 7 4.2150 -1.4312 2.1894 8 6 5.6791 -1.5448 2.1445 9 6 6.2615 -0.9651 3.4375 10 6 5.6106 -1.6614 4.6388 11 6 6.2118 -1.1100 5.9332 12 7 5.6878 -1.8669 7.0779 13 6 6.3286 -3.1852 7.1751 14 6 5.8477 -1.1104 8.3269 15 6 5.0874 -1.7980 9.4315 16 8 4.4732 -2.8182 9.2011 17 7 5.0908 -1.2798 10.6758 18 6 4.3987 -1.9051 11.6805 19 1 3.8504 -2.8126 11.4750 20 6 4.4026 -1.3713 12.9634 21 7 5.0693 -0.2668 13.2134 22 14 3.4590 -2.2228 14.3323 23 1 2.7966 -3.4384 13.7950 24 1 4.3989 -2.6093 15.4150 25 1 2.4319 -1.2978 14.8751 26 6 4.1022 -1.4032 4.6268 27 6 3.4984 -1.9872 3.3452 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6054 -1.7198 1.2951 36 1 1.7517 -0.1583 2.1369 37 1 5.9618 -2.5937 2.0546 38 1 6.0628 -0.9883 1.2893 39 1 7.3389 -1.1297 3.4571 40 1 6.0555 0.1043 3.4819 41 1 5.7958 -2.7340 4.5804 42 1 7.2970 -1.2067 5.8998 43 1 5.9438 -0.0588 6.0393 44 1 7.3866 -3.0588 7.4051 45 1 5.8514 -3.7637 7.9661 46 1 6.2233 -3.7112 6.2263 47 1 6.9045 -1.0613 8.5892 48 1 5.4595 -0.1008 8.1925 49 1 5.5829 -0.4646 10.8602 50 1 5.0717 0.1062 14.1089 51 1 3.9165 -0.3296 4.6602 52 1 3.6443 -1.8787 5.4941 53 1 2.4433 -1.7207 3.2839 54 1 3.6014 -3.0723 3.3516 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267597218.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:13 Heat of formation + Delta-G solvation = -105.709171 kcal Electronic energy + Delta-G solvation = -30125.596824 eV Core-core repulsion = 26095.769334 eV Total energy + Delta-G solvation = -4029.827490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.34042 -40.36469 -39.13567 -37.44443 -36.41089 -35.84488 -34.12447 -33.23893 -32.13144 -29.83461 -29.23835 -28.17293 -27.94135 -26.76743 -25.09255 -24.19954 -22.88818 -21.60215 -20.96706 -20.77512 -19.85503 -19.73824 -18.12239 -17.75108 -17.05517 -16.63469 -16.57364 -16.51302 -16.22128 -15.69590 -15.64785 -15.35234 -15.20976 -15.05561 -14.78642 -14.62832 -14.31343 -14.05717 -13.87154 -13.67424 -13.42800 -13.32674 -13.18047 -13.03265 -12.96450 -12.76376 -12.68007 -12.57486 -12.39330 -12.36036 -12.20050 -12.10177 -12.00599 -11.73743 -11.72451 -11.56841 -11.44189 -11.34600 -11.30022 -10.61993 -10.23115 -9.97103 -9.59473 -9.12381 -8.44408 -5.92508 1.37660 1.42794 1.56756 1.66366 2.07130 2.09307 2.29891 2.80861 3.22770 3.46434 3.56998 3.78346 3.84608 3.92441 4.01902 4.03473 4.18669 4.27570 4.32797 4.37135 4.38571 4.45914 4.53488 4.54702 4.57581 4.64148 4.69597 4.70672 4.74617 4.79370 4.81089 4.85314 4.88146 4.92160 5.00602 5.04694 5.07098 5.10329 5.14971 5.26488 5.29512 5.37744 5.43570 5.46506 5.51385 5.51775 5.67511 5.93395 6.12121 6.28558 6.45664 6.63828 7.16199 7.22225 7.60369 8.16210 8.73266 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016233 B = 0.001982 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.476456 B =14123.345431 C =15108.754170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.151 4.151 4 C -0.134 4.134 5 C 0.509 3.491 6 O -0.581 6.581 7 N -0.611 5.611 8 C 0.111 3.889 9 C -0.118 4.118 10 C -0.073 4.073 11 C 0.060 3.940 12 N -0.529 5.529 13 C 0.028 3.972 14 C 0.057 3.943 15 C 0.444 3.556 16 O -0.611 6.611 17 N -0.578 5.578 18 C -0.328 4.328 19 H 0.080 0.920 20 C -0.016 4.016 21 N -0.922 5.922 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.272 1.272 26 C -0.117 4.117 27 C 0.107 3.893 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.112 0.888 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.023 0.977 45 H 0.054 0.946 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.395 0.605 50 H 0.276 0.724 51 H 0.058 0.942 52 H 0.075 0.925 53 H 0.102 0.898 54 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.811 1.048 -23.292 23.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.099 4.099 3 C -0.208 4.208 4 C -0.174 4.174 5 C 0.299 3.701 6 O -0.462 6.462 7 N -0.344 5.344 8 C -0.011 4.011 9 C -0.156 4.156 10 C -0.092 4.092 11 C -0.067 4.067 12 N -0.253 5.253 13 C -0.120 4.120 14 C -0.074 4.074 15 C 0.231 3.769 16 O -0.497 6.497 17 N -0.215 5.215 18 C -0.457 4.457 19 H 0.098 0.902 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.197 1.197 26 C -0.156 4.156 27 C -0.015 4.015 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.130 0.870 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.094 0.906 44 H 0.041 0.959 45 H 0.073 0.927 46 H 0.100 0.900 47 H 0.080 0.920 48 H 0.124 0.876 49 H 0.228 0.772 50 H 0.086 0.914 51 H 0.076 0.924 52 H 0.093 0.907 53 H 0.120 0.880 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.381 0.631 -23.834 23.961 hybrid contribution 0.938 0.268 1.287 1.615 sum -1.443 0.899 -22.547 22.611 Atomic orbital electron populations 1.21824 0.93291 1.02520 1.02454 1.20851 0.96334 0.96067 0.96680 1.21915 1.01362 0.95952 1.01573 1.21864 0.90065 1.04213 1.01221 1.21250 0.91390 0.76205 0.81262 1.90631 1.71338 1.49458 1.34738 1.48307 1.07599 1.57358 1.21127 1.21570 0.79508 1.01537 0.98518 1.21908 1.00711 0.99962 0.93055 1.21099 0.95167 1.00318 0.92612 1.22254 0.97196 0.97655 0.89604 1.61495 1.58514 1.03465 1.01789 1.22433 0.95538 0.91154 1.02873 1.21764 0.98587 0.97937 0.89114 1.20778 0.85383 0.86798 0.83925 1.90455 1.48717 1.27529 1.82980 1.41968 1.46168 1.25783 1.07631 1.19679 1.28143 1.08951 0.88956 0.90242 1.26028 0.98371 0.96868 1.00261 1.69682 1.42565 1.20846 1.23287 0.84882 0.77975 0.78107 0.77458 1.19701 1.19813 1.19711 1.21788 0.95545 1.01053 0.97189 1.21929 0.97153 0.98619 0.83758 0.91929 0.92232 0.91723 0.92167 0.92626 0.93323 0.92618 0.86984 0.87507 0.90656 0.90522 0.89392 0.92138 0.90810 0.93676 0.90634 0.95891 0.92690 0.90029 0.91957 0.87577 0.77170 0.91437 0.92350 0.90675 0.88015 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 2 C -0.08 -1.23 2.57 -10.79 -0.03 -1.26 16 3 C -0.15 -2.65 8.93 71.98 0.64 -2.00 16 4 C -0.13 -1.88 3.52 29.84 0.11 -1.78 16 5 C 0.51 10.36 7.41 87.66 0.65 11.01 16 6 O -0.58 -16.00 13.38 -3.06 -0.04 -16.04 16 7 N -0.61 -10.83 2.97 -818.82 -2.43 -13.26 16 8 C 0.11 1.90 6.42 86.37 0.55 2.46 16 9 C -0.12 -1.83 5.39 30.78 0.17 -1.66 16 10 C -0.07 -1.31 2.21 -10.66 -0.02 -1.33 16 11 C 0.06 1.28 4.39 86.30 0.38 1.66 16 12 N -0.53 -15.52 3.88 -927.04 -3.60 -19.12 16 13 C 0.03 0.83 9.03 127.69 1.15 1.98 16 14 C 0.06 1.90 5.43 85.56 0.46 2.37 16 15 C 0.44 20.50 7.52 87.66 0.66 21.16 16 16 O -0.61 -32.48 13.88 -3.05 -0.04 -32.53 16 17 N -0.58 -29.20 5.29 -306.97 -1.62 -30.82 16 18 C -0.33 -18.36 9.68 84.04 0.81 -17.55 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.02 -0.85 5.50 84.93 0.47 -0.38 16 21 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 22 Si 0.99 42.60 29.55 68.60 2.03 44.63 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 26 C -0.12 -2.20 5.27 30.69 0.16 -2.03 16 27 C 0.11 1.60 6.34 86.38 0.55 2.15 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 1.11 7.95 -2.39 -0.02 1.09 16 32 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 1.11 5.95 -2.39 -0.01 1.10 16 34 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.11 1.13 7.94 -2.39 -0.02 1.12 16 36 H 0.11 1.25 7.69 -2.39 -0.02 1.23 16 37 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.08 1.55 7.00 -2.39 -0.02 1.54 16 39 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.07 1.35 6.69 -2.38 -0.02 1.34 16 42 H 0.05 0.87 8.00 -2.39 -0.02 0.85 16 43 H 0.08 1.54 7.73 -2.39 -0.02 1.53 16 44 H 0.02 0.62 8.13 -2.38 -0.02 0.60 16 45 H 0.05 2.11 5.91 -2.39 -0.01 2.09 16 46 H 0.08 1.99 6.65 -2.39 -0.02 1.98 16 47 H 0.06 1.89 8.11 -2.39 -0.02 1.87 16 48 H 0.11 3.13 7.83 -2.39 -0.02 3.11 16 49 H 0.39 19.05 7.90 -92.71 -0.73 18.32 16 50 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 51 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 52 H 0.07 1.78 7.73 -2.39 -0.02 1.77 16 53 H 0.10 1.16 5.93 -2.39 -0.01 1.15 16 54 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -69.26 416.18 2.09 -67.17 By element: Atomic # 1 Polarization: 35.20 SS G_CDS: 0.14 Total: 35.34 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 7.37 Total: 13.88 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -7.37 Total: -112.46 kcal Atomic # 8 Polarization: -48.49 SS G_CDS: -0.08 Total: -48.57 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -69.26 2.09 -67.17 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267597218.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.538 kcal (2) G-P(sol) polarization free energy of solvation -69.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds