Wall clock time and date at job start Sat Apr 11 2020 05:50:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52991 * 109.47170 * 2 1 4 4 C 1.52999 * 109.47170 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47380 * 183.40653 * 4 3 2 6 6 H 1.08996 * 109.47381 * 306.36085 * 5 4 3 7 7 C 1.50706 * 109.47213 * 186.36128 * 5 4 3 8 8 O 1.21280 * 119.99603 * 350.04683 * 7 5 4 9 9 N 1.34771 * 119.99853 * 170.04678 * 7 5 4 10 10 C 1.46503 * 119.99661 * 177.33841 * 9 7 5 11 11 C 1.53509 * 114.16804 * 155.00481 * 10 9 7 12 12 N 1.47470 * 87.93508 * 87.62066 * 11 10 9 13 13 C 1.46902 * 110.99946 * 138.70681 * 12 11 10 14 14 C 1.50707 * 109.47218 * 170.00323 * 13 12 11 15 15 O 1.21290 * 119.99912 * 359.97438 * 14 13 12 16 16 N 1.34773 * 119.99791 * 179.72155 * 14 13 12 17 17 C 1.37098 * 120.00009 * 179.97438 * 16 14 13 18 18 H 1.08001 * 119.99725 * 359.97438 * 17 16 14 19 19 C 1.38948 * 120.00304 * 180.02562 * 17 16 14 20 20 N 1.31417 * 119.99758 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00222 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.46979 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46965 * 119.99623 * 21 19 17 24 24 H 1.48496 * 109.47033 * 239.99612 * 21 19 17 25 25 C 1.47471 * 87.83820 * 27.01223 * 12 11 10 26 26 C 1.53006 * 109.46925 * 66.36062 * 5 4 3 27 27 C 1.53004 * 109.46990 * 59.74011 * 26 5 4 28 28 C 1.52998 * 109.46935 * 179.73852 * 26 5 4 29 29 H 1.09006 * 109.46710 * 60.00512 * 1 2 3 30 30 H 1.09000 * 109.47751 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47594 * 300.00551 * 1 2 3 32 32 H 1.08998 * 109.47088 * 239.99301 * 2 1 3 33 33 H 1.09006 * 109.46710 * 119.99487 * 2 1 3 34 34 H 1.08998 * 109.47686 * 59.99667 * 3 2 1 35 35 H 1.09006 * 109.46885 * 299.99380 * 3 2 1 36 36 H 1.09003 * 109.47603 * 63.40313 * 4 3 2 37 37 H 1.09008 * 109.47026 * 303.40678 * 4 3 2 38 38 H 0.97003 * 120.00052 * 357.34646 * 9 7 5 39 39 H 1.08993 * 113.38584 * 21.92173 * 10 9 7 40 40 H 1.09004 * 113.47629 * 332.85255 * 11 10 9 41 41 H 1.09004 * 113.53079 * 202.40228 * 11 10 9 42 42 H 1.09001 * 109.47763 * 49.99693 * 13 12 11 43 43 H 1.09009 * 109.46917 * 289.99355 * 13 12 11 44 44 H 0.97003 * 120.00642 * 359.97438 * 16 14 13 45 45 H 0.96999 * 119.99412 * 179.97438 * 20 19 17 46 46 H 1.08996 * 113.48006 * 87.75354 * 25 12 11 47 47 H 1.09006 * 113.47677 * 218.22234 * 25 12 11 48 48 H 1.08991 * 109.46986 * 299.74255 * 26 5 4 49 49 H 1.09000 * 109.46940 * 63.33544 * 27 26 5 50 50 H 1.08995 * 109.47114 * 183.33766 * 27 26 5 51 51 H 1.08997 * 109.47398 * 303.33794 * 27 26 5 52 52 H 1.09002 * 109.46975 * 59.29904 * 28 26 5 53 53 H 1.09000 * 109.46950 * 179.29648 * 28 26 5 54 54 H 1.09004 * 109.47031 * 299.29822 * 28 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0800 2.8824 0.0864 6 1 3.6271 3.4761 -0.7076 7 6 5.5789 2.8946 -0.0700 8 8 6.1988 1.8523 -0.0526 9 7 6.2303 4.0636 -0.2291 10 6 7.6922 4.0807 -0.3226 11 6 8.2597 5.2914 -1.0767 12 7 8.2553 6.0234 0.2035 13 6 9.4756 6.8271 0.3546 14 6 9.3303 7.7427 1.5428 15 8 8.3103 7.7276 2.1989 16 7 10.3357 8.5747 1.8794 17 6 10.2034 9.4080 2.9599 18 1 9.2932 9.3980 3.5412 19 6 11.2397 10.2661 3.3067 20 7 12.3470 10.2786 2.5990 21 14 11.0596 11.4010 4.7794 22 1 9.7279 11.1948 5.4032 23 1 12.1232 11.0983 5.7705 24 1 11.1844 12.8124 4.3349 25 6 8.3918 4.7222 0.8839 26 6 3.7041 3.4765 1.4453 27 6 4.3346 2.6392 2.5600 28 6 4.2198 4.9142 1.5336 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 1.6767 1.9563 0.8899 35 1 1.6767 1.9562 -0.8901 36 1 3.9338 0.9822 -0.9180 37 1 3.9329 0.8767 0.8588 38 1 5.7311 4.8937 -0.2816 39 1 8.1173 3.1249 -0.6287 40 1 7.5724 5.7041 -1.8152 41 1 9.2593 5.1246 -1.4782 42 1 9.6329 7.4218 -0.5453 43 1 10.3292 6.1665 0.5074 44 1 11.1531 8.5840 1.3571 45 1 13.0703 10.8779 2.8409 46 1 9.4266 4.4026 1.0063 47 1 7.8164 4.6524 1.8072 48 1 2.6199 3.4719 1.5564 49 1 5.4207 2.6921 2.4841 50 1 4.0187 3.0268 3.5285 51 1 4.0136 1.6022 2.4614 52 1 3.7802 5.5077 0.7319 53 1 3.9412 5.3417 2.4968 54 1 5.3054 4.9176 1.4349 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267672430.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:20 Heat of formation + Delta-G solvation = -81.616472 kcal Electronic energy + Delta-G solvation = -30268.078956 eV Core-core repulsion = 26239.296204 eV Total energy + Delta-G solvation = -4028.782752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.93624 -40.74206 -39.55179 -37.76433 -35.96842 -35.78609 -34.74932 -33.26999 -31.76614 -31.18052 -28.30648 -27.85648 -27.19995 -26.94534 -25.22179 -23.65041 -22.83699 -21.79051 -21.24217 -20.72644 -20.09321 -19.88168 -17.98147 -17.76285 -17.16719 -17.02797 -16.70426 -16.51513 -16.41314 -16.18884 -15.60930 -15.40481 -14.98315 -14.89380 -14.70007 -14.62696 -14.47034 -14.16265 -13.80361 -13.60938 -13.54793 -13.48728 -13.35153 -13.09903 -12.95505 -12.61015 -12.57281 -12.43791 -12.30017 -12.25040 -12.11341 -12.03119 -11.84838 -11.83801 -11.77690 -11.55611 -11.50247 -11.33102 -11.16378 -10.68095 -10.37445 -10.00426 -9.98318 -9.72115 -8.47061 -5.95392 1.35450 1.40423 1.54429 1.63485 2.07013 2.16276 2.28176 2.84868 3.19280 3.34420 3.51930 3.64701 3.72617 3.78600 3.84444 4.09745 4.14892 4.15781 4.25398 4.29827 4.31482 4.40349 4.47508 4.49970 4.53484 4.57310 4.60385 4.66509 4.73535 4.75629 4.78279 4.84138 4.89066 4.93077 4.99406 5.05079 5.11675 5.15170 5.17972 5.28557 5.30990 5.32093 5.40674 5.44467 5.46867 5.51743 5.53765 5.62488 5.86466 6.06740 6.58190 6.61165 7.13657 7.26988 7.57584 8.14244 8.70620 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.021409 B = 0.002007 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.561237 B =13946.491217 C =14840.502173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.115 4.115 4 C -0.098 4.098 5 C -0.098 4.098 6 H 0.117 0.883 7 C 0.521 3.479 8 O -0.580 6.580 9 N -0.697 5.697 10 C 0.123 3.877 11 C 0.000 4.000 12 N -0.465 5.465 13 C 0.020 3.980 14 C 0.442 3.558 15 O -0.617 6.617 16 N -0.577 5.577 17 C -0.332 4.332 18 H 0.076 0.924 19 C -0.013 4.013 20 N -0.921 5.921 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.270 1.270 25 C -0.013 4.013 26 C -0.076 4.076 27 C -0.152 4.152 28 C -0.170 4.170 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.061 0.939 38 H 0.415 0.585 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.106 0.894 49 H 0.027 0.973 50 H 0.060 0.940 51 H 0.066 0.934 52 H 0.074 0.926 53 H 0.053 0.947 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.360 -16.871 -10.285 26.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.152 4.152 4 C -0.135 4.135 5 C -0.119 4.119 6 H 0.135 0.865 7 C 0.310 3.690 8 O -0.459 6.459 9 N -0.350 5.350 10 C 0.016 3.984 11 C -0.129 4.129 12 N -0.188 5.188 13 C -0.111 4.111 14 C 0.229 3.771 15 O -0.503 6.503 16 N -0.215 5.215 17 C -0.462 4.462 18 H 0.094 0.906 19 C -0.213 4.213 20 N -0.562 5.562 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.196 1.196 24 H -0.195 1.195 25 C -0.144 4.144 26 C -0.095 4.095 27 C -0.209 4.209 28 C -0.228 4.228 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.130 0.870 40 H 0.122 0.878 41 H 0.123 0.877 42 H 0.130 0.870 43 H 0.101 0.899 44 H 0.229 0.771 45 H 0.086 0.914 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.124 0.876 49 H 0.046 0.954 50 H 0.079 0.921 51 H 0.085 0.915 52 H 0.093 0.907 53 H 0.072 0.928 54 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.956 -16.999 -9.643 26.540 hybrid contribution 1.501 0.731 0.594 1.772 sum -16.455 -16.268 -9.049 24.845 Atomic orbital electron populations 1.21767 0.95252 1.01792 1.02069 1.21524 0.96295 0.96827 1.01761 1.21649 0.93462 0.97147 1.02979 1.21425 0.96116 0.93686 1.02316 1.21508 0.89825 1.00117 1.00449 0.86483 1.21161 0.91168 0.82707 0.73955 1.90656 1.70229 1.33179 1.51859 1.45946 1.06129 1.09975 1.72918 1.21878 0.81628 0.99333 0.95606 1.24334 1.02967 0.91878 0.93744 1.68774 1.32963 1.10713 1.06323 1.22404 0.93837 0.97479 0.97401 1.20822 0.83940 0.84028 0.88267 1.90486 1.31189 1.72010 1.56592 1.41952 1.16470 1.35175 1.27888 1.19670 1.02483 1.16975 1.07027 0.90568 1.26005 0.94439 0.99292 1.01521 1.69676 1.05925 1.39613 1.40962 0.84897 0.78190 0.77850 0.77560 1.19944 1.19649 1.19504 1.24413 1.00923 0.90034 0.99021 1.21066 1.02005 0.94252 0.92129 1.21938 0.99457 1.00652 0.98854 1.22238 1.01788 0.95998 1.02761 0.92401 0.92686 0.92537 0.92370 0.92522 0.90933 0.91013 0.92490 0.92084 0.74638 0.87000 0.87781 0.87667 0.86975 0.89937 0.77054 0.91358 0.89659 0.92321 0.87578 0.95364 0.92122 0.91470 0.90725 0.92769 0.92860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.13 -1.49 5.93 30.59 0.18 -1.31 16 3 C -0.12 -1.33 5.07 30.59 0.15 -1.18 16 4 C -0.10 -1.59 3.80 30.59 0.12 -1.47 16 5 C -0.10 -1.63 2.07 -11.54 -0.02 -1.65 16 6 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 7 C 0.52 12.15 5.64 87.66 0.49 12.65 16 8 O -0.58 -17.60 15.61 -3.03 -0.05 -17.65 16 9 N -0.70 -15.34 3.93 -441.70 -1.74 -17.07 16 10 C 0.12 2.81 4.61 45.45 0.21 3.02 16 11 C 0.00 0.00 7.45 83.57 0.62 0.62 16 12 N -0.47 -14.06 5.82 -932.66 -5.43 -19.49 16 13 C 0.02 0.68 5.30 85.56 0.45 1.13 16 14 C 0.44 21.11 7.85 87.66 0.69 21.80 16 15 O -0.62 -34.68 16.01 -3.06 -0.05 -34.73 16 16 N -0.58 -29.71 5.29 -306.99 -1.62 -31.33 16 17 C -0.33 -19.03 9.68 84.04 0.81 -18.22 16 18 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 19 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 20 N -0.92 -49.77 13.05 21.66 0.28 -49.49 16 21 Si 0.99 43.28 29.55 68.60 2.03 45.30 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 C -0.01 -0.39 7.52 83.57 0.63 0.24 16 26 C -0.08 -1.26 2.53 -10.79 -0.03 -1.29 16 27 C -0.15 -3.09 8.63 71.98 0.62 -2.47 16 28 C -0.17 -3.38 7.95 71.98 0.57 -2.81 16 29 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.76 6.47 -2.39 -0.02 0.75 16 35 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.06 1.05 8.06 -2.39 -0.02 1.03 16 37 H 0.06 1.18 6.03 -2.38 -0.01 1.17 16 38 H 0.41 8.41 6.71 -92.71 -0.62 7.78 16 39 H 0.11 2.57 7.43 -2.39 -0.02 2.55 16 40 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.11 1.67 7.91 -2.38 -0.02 1.66 16 42 H 0.11 3.19 8.08 -2.39 -0.02 3.17 16 43 H 0.08 2.38 7.30 -2.38 -0.02 2.36 16 44 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 45 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 46 H 0.09 2.25 7.42 -2.39 -0.02 2.23 16 47 H 0.06 2.03 8.14 -2.38 -0.02 2.02 16 48 H 0.11 1.32 6.55 -2.39 -0.02 1.30 16 49 H 0.03 0.72 7.35 -2.39 -0.02 0.70 16 50 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 51 H 0.07 1.26 6.12 -2.39 -0.01 1.25 16 52 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 53 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 54 H 0.05 1.33 5.39 -2.38 -0.01 1.32 16 Total: -1.00 -72.72 421.90 -0.35 -73.07 By element: Atomic # 1 Polarization: 43.79 SS G_CDS: -0.46 Total: 43.34 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 6.69 Total: 8.05 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -8.51 Total: -117.38 kcal Atomic # 8 Polarization: -52.28 SS G_CDS: -0.10 Total: -52.38 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -72.72 -0.35 -73.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267672430.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.545 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds