Wall clock time and date at job start Sat Apr 11 2020 05:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47310 * 2 1 4 4 C 1.52999 * 109.47310 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47140 * 180.02562 * 4 3 2 6 6 O 1.21273 * 120.00495 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99974 * 180.02562 * 5 4 3 8 8 C 1.46928 * 120.63186 * 180.02562 * 7 5 4 9 9 C 1.53193 * 108.88994 * 233.67357 * 8 7 5 10 10 C 1.53037 * 109.31389 * 305.29180 * 9 8 7 11 11 C 1.53003 * 109.45668 * 181.37152 * 10 9 8 12 12 N 1.46901 * 109.47133 * 65.43563 * 11 10 9 13 13 C 1.46909 * 110.99908 * 75.82738 * 12 11 10 14 14 C 1.46894 * 111.00075 * 199.78093 * 12 11 10 15 15 C 1.50697 * 109.47197 * 169.99962 * 14 12 11 16 16 O 1.21301 * 119.99898 * 0.02562 * 15 14 12 17 17 N 1.34777 * 120.00383 * 180.02562 * 15 14 12 18 18 C 1.37103 * 120.00128 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99856 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99394 * 179.97438 * 18 17 15 21 21 N 1.31419 * 119.99483 * 179.97438 * 20 18 17 22 22 Si 1.86794 * 120.00510 * 0.02562 * 20 18 17 23 23 H 1.48494 * 109.47136 * 89.99880 * 22 20 18 24 24 H 1.48510 * 109.46799 * 210.00011 * 22 20 18 25 25 H 1.48504 * 109.46990 * 329.99488 * 22 20 18 26 26 C 1.53041 * 109.53603 * 61.37077 * 10 9 8 27 27 C 1.47213 * 120.81166 * 0.13840 * 7 5 4 28 28 H 1.08994 * 109.47265 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.46826 * 299.99919 * 1 2 3 30 30 H 1.09000 * 109.46872 * 59.99435 * 1 2 3 31 31 H 1.08995 * 109.47062 * 240.00136 * 2 1 3 32 32 H 1.08996 * 109.47293 * 120.00364 * 2 1 3 33 33 H 1.09008 * 109.47110 * 60.00255 * 3 2 1 34 34 H 1.08996 * 109.47239 * 300.00397 * 3 2 1 35 35 H 1.09003 * 109.47232 * 59.99874 * 4 3 2 36 36 H 1.09000 * 109.46872 * 300.00565 * 4 3 2 37 37 H 1.08993 * 109.58318 * 113.81839 * 8 7 5 38 38 H 1.09002 * 109.58177 * 353.53426 * 8 7 5 39 39 H 1.08997 * 109.49709 * 65.25057 * 9 8 7 40 40 H 1.09003 * 109.49619 * 185.30838 * 9 8 7 41 41 H 1.08995 * 109.46461 * 301.34382 * 10 9 8 42 42 H 1.09004 * 109.46968 * 185.43191 * 11 10 9 43 43 H 1.08996 * 109.47467 * 305.43655 * 11 10 9 44 44 H 1.08994 * 109.47167 * 65.78348 * 13 12 11 45 45 H 1.09005 * 109.46987 * 185.78748 * 13 12 11 46 46 H 1.09001 * 109.46742 * 305.78880 * 13 12 11 47 47 H 1.08997 * 109.47321 * 289.99632 * 14 12 11 48 48 H 1.08998 * 109.47165 * 49.99965 * 14 12 11 49 49 H 0.97001 * 119.99597 * 359.97438 * 17 15 14 50 50 H 0.96993 * 120.00027 * 180.02562 * 21 20 18 51 51 H 1.08997 * 109.49922 * 58.58293 * 26 10 9 52 52 H 1.09005 * 109.49368 * 178.68267 * 26 10 9 53 53 H 1.09004 * 109.53264 * 6.53872 * 27 7 5 54 54 H 1.08997 * 109.67633 * 246.23333 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0724 2.8633 0.0013 6 8 3.2844 3.7851 0.0017 7 7 5.3975 3.1096 0.0014 8 6 5.9025 4.4893 0.0026 9 6 6.8792 4.6610 -1.1651 10 6 7.9727 3.5945 -1.0713 11 6 8.9692 3.7842 -2.2167 12 7 9.6711 5.0636 -2.0483 13 6 10.6871 4.9715 -0.9911 14 6 10.2681 5.5073 -3.3150 15 6 10.7625 6.9233 -3.1685 16 8 10.6308 7.5055 -2.1126 17 7 11.3509 7.5429 -4.2108 18 6 11.8011 8.8310 -4.0774 19 1 11.6838 9.3493 -3.1372 20 6 12.4081 9.4695 -5.1519 21 7 12.8392 10.7044 -5.0242 22 14 12.6103 8.5732 -6.7782 23 1 11.4172 8.8154 -7.6285 24 1 13.8232 9.0752 -7.4726 25 1 12.7513 7.1165 -6.5264 26 6 7.3412 2.2039 -1.1703 27 6 6.3699 2.0043 -0.0022 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6767 1.9564 0.8901 34 1 1.6767 1.9564 -0.8899 35 1 3.9338 0.9285 -0.8891 36 1 3.9330 0.9287 0.8908 37 1 6.4176 4.6890 0.9421 38 1 5.0698 5.1832 -0.1124 39 1 6.3427 4.5502 -2.1074 40 1 7.3315 5.6516 -1.1184 41 1 8.4926 3.6902 -0.1181 42 1 9.6927 2.9689 -2.2076 43 1 8.4350 3.7852 -3.1667 44 1 11.4709 4.2799 -1.2997 45 1 11.1198 5.9566 -0.8163 46 1 10.2242 4.6099 -0.0729 47 1 11.1035 4.8555 -3.5709 48 1 9.5183 5.4641 -4.1049 49 1 11.4565 7.0772 -5.0551 50 1 13.2626 11.1503 -5.7742 51 1 6.8004 2.1162 -2.1126 52 1 8.1230 1.4455 -1.1269 53 1 5.8443 1.0568 -0.1216 54 1 6.9232 1.9993 0.9369 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267719194.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:27 Heat of formation + Delta-G solvation = -106.813438 kcal Electronic energy + Delta-G solvation = -29718.780633 eV Core-core repulsion = 25688.905258 eV Total energy + Delta-G solvation = -4029.875375 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.26906 -40.48293 -39.10064 -37.40721 -36.23545 -35.90883 -34.11710 -33.73174 -32.38445 -31.06574 -29.72298 -28.56519 -26.80991 -25.89300 -24.90102 -23.87057 -22.70664 -21.95868 -21.23521 -21.05296 -20.17982 -19.76810 -18.05924 -17.76256 -17.00311 -16.85057 -16.81557 -16.55578 -16.22458 -15.79537 -15.65428 -15.39500 -14.97246 -14.96848 -14.84034 -14.52826 -14.44332 -14.34436 -14.16896 -13.86521 -13.63748 -13.57046 -13.28343 -13.14370 -13.04719 -12.67268 -12.59821 -12.40922 -12.36552 -12.22882 -12.16718 -11.99089 -11.97668 -11.83277 -11.74635 -11.46925 -11.44225 -11.42903 -11.26227 -10.73145 -10.33402 -10.22121 -9.62727 -9.10887 -8.40587 -6.01085 1.29403 1.35640 1.44027 1.65537 1.98446 2.05095 2.23235 2.66614 3.15521 3.29113 3.55809 3.80115 3.88435 3.94701 4.01372 4.07251 4.14093 4.20939 4.32020 4.36168 4.36971 4.44240 4.47168 4.48525 4.53400 4.60284 4.63720 4.64707 4.75959 4.80042 4.82648 4.89458 4.91279 4.94601 5.00998 5.02605 5.07305 5.12563 5.19902 5.27538 5.28077 5.32060 5.40510 5.51542 5.51690 5.55090 5.65145 5.93131 6.07262 6.29554 6.47231 6.61538 6.90303 7.20791 7.41850 8.00140 8.77263 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.022539 B = 0.001771 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.017151 B =15808.863479 C =16029.145378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.105 4.105 4 C -0.130 4.130 5 C 0.502 3.498 6 O -0.598 6.598 7 N -0.611 5.611 8 C 0.111 3.889 9 C -0.111 4.111 10 C -0.075 4.075 11 C 0.062 3.938 12 N -0.540 5.540 13 C 0.028 3.972 14 C 0.056 3.944 15 C 0.451 3.549 16 O -0.605 6.605 17 N -0.594 5.594 18 C -0.327 4.327 19 H 0.054 0.946 20 C -0.016 4.016 21 N -0.936 5.936 22 Si 0.965 3.035 23 H -0.259 1.259 24 H -0.275 1.275 25 H -0.231 1.231 26 C -0.122 4.122 27 C 0.104 3.896 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.047 0.953 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.031 0.969 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.115 0.885 49 H 0.389 0.611 50 H 0.278 0.722 51 H 0.069 0.931 52 H 0.102 0.898 53 H 0.116 0.884 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -32.176 5.857 36.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.143 4.143 4 C -0.169 4.169 5 C 0.293 3.707 6 O -0.479 6.479 7 N -0.344 5.344 8 C -0.012 4.012 9 C -0.150 4.150 10 C -0.094 4.094 11 C -0.066 4.066 12 N -0.265 5.265 13 C -0.120 4.120 14 C -0.076 4.076 15 C 0.239 3.761 16 O -0.489 6.489 17 N -0.236 5.236 18 C -0.456 4.456 19 H 0.072 0.928 20 C -0.214 4.214 21 N -0.577 5.577 22 Si 0.785 3.215 23 H -0.183 1.183 24 H -0.200 1.200 25 H -0.154 1.154 26 C -0.161 4.161 27 C -0.018 4.018 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.050 0.950 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.133 0.867 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.088 0.912 52 H 0.120 0.880 53 H 0.134 0.866 54 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.242 -30.785 6.643 35.435 hybrid contribution 0.994 0.614 -1.035 1.560 sum -15.249 -30.172 5.608 34.268 Atomic orbital electron populations 1.21799 0.96137 1.02040 1.01460 1.21510 0.95807 0.95051 1.03168 1.21353 0.93607 0.97657 1.01694 1.21770 0.97187 0.91435 1.06539 1.21562 0.81592 0.92985 0.74592 1.90677 1.56198 1.48588 1.52453 1.48403 1.05879 1.07725 1.72366 1.21487 0.97203 0.83468 0.99009 1.21710 0.95837 1.00237 0.97178 1.21088 0.94668 0.94867 0.98806 1.22273 0.96173 0.88582 0.99522 1.61434 1.29219 1.30501 1.05307 1.22414 0.93439 1.01022 0.95091 1.21841 1.00354 0.91363 0.93999 1.20983 0.81313 0.89999 0.83850 1.90518 1.60328 1.68680 1.29356 1.42055 1.55136 1.13095 1.13354 1.18996 1.37023 0.89588 0.99989 0.92779 1.26108 0.95807 0.96536 1.02964 1.69811 1.40357 1.13485 1.34055 0.85363 0.79090 0.80001 0.77043 1.18306 1.20045 1.15382 1.21936 0.99154 0.96155 0.98843 1.22107 0.90570 0.89489 0.99598 0.91646 0.93289 0.93367 0.90718 0.90642 0.93256 0.93368 0.86336 0.86274 0.91314 0.92046 0.92900 0.91958 0.91005 0.92523 0.90311 0.95030 0.93373 0.90239 0.90504 0.86667 0.77598 0.91224 0.91245 0.87958 0.86610 0.90024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.91 71.98 0.71 -0.83 16 2 C -0.12 -1.00 5.93 30.59 0.18 -0.82 16 3 C -0.10 -1.45 4.50 30.59 0.14 -1.31 16 4 C -0.13 -1.38 4.05 29.85 0.12 -1.26 16 5 C 0.50 10.26 7.70 87.65 0.68 10.94 16 6 O -0.60 -18.54 15.39 -3.01 -0.05 -18.58 16 7 N -0.61 -10.59 2.98 -818.09 -2.44 -13.03 16 8 C 0.11 2.49 6.42 86.36 0.55 3.04 16 9 C -0.11 -2.49 5.27 30.67 0.16 -2.32 16 10 C -0.08 -1.23 2.21 -10.77 -0.02 -1.25 16 11 C 0.06 1.13 4.39 86.30 0.38 1.51 16 12 N -0.54 -15.25 3.88 -927.05 -3.60 -18.84 16 13 C 0.03 0.81 9.03 127.69 1.15 1.97 16 14 C 0.06 1.68 5.43 85.56 0.46 2.14 16 15 C 0.45 20.34 7.52 87.66 0.66 21.00 16 16 O -0.61 -33.43 13.88 -3.10 -0.04 -33.48 16 17 N -0.59 -28.15 5.09 -306.98 -1.56 -29.72 16 18 C -0.33 -19.30 10.16 84.04 0.85 -18.45 16 19 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 20 C -0.02 -0.89 5.50 84.92 0.47 -0.42 16 21 N -0.94 -56.98 13.96 21.66 0.30 -56.68 16 22 Si 0.97 38.98 27.74 68.60 1.90 40.89 16 23 H -0.26 -9.96 7.11 99.48 0.71 -9.25 16 24 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 25 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 26 C -0.12 -1.11 5.36 30.69 0.16 -0.95 16 27 C 0.10 0.88 6.36 86.32 0.55 1.42 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.05 0.87 8.10 -2.38 -0.02 0.85 16 34 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 35 H 0.12 0.67 7.70 -2.39 -0.02 0.65 16 36 H 0.12 0.64 7.96 -2.39 -0.02 0.62 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.06 1.72 7.00 -2.39 -0.02 1.71 16 39 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 1.81 7.73 -2.39 -0.02 1.79 16 41 H 0.07 1.24 6.69 -2.39 -0.02 1.22 16 42 H 0.06 0.83 8.00 -2.39 -0.02 0.81 16 43 H 0.08 1.34 7.73 -2.39 -0.02 1.33 16 44 H 0.03 0.78 8.13 -2.39 -0.02 0.76 16 45 H 0.05 1.87 5.91 -2.38 -0.01 1.85 16 46 H 0.08 1.92 6.65 -2.39 -0.02 1.90 16 47 H 0.08 1.91 8.11 -2.39 -0.02 1.89 16 48 H 0.12 2.89 7.83 -2.39 -0.02 2.87 16 49 H 0.39 15.20 5.76 -92.71 -0.53 14.67 16 50 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 51 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 52 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 53 H 0.12 0.29 5.97 -2.39 -0.01 0.28 16 54 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 Total: -1.00 -84.47 417.88 2.00 -82.47 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: 0.28 Total: 32.55 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 7.21 Total: 14.43 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -7.30 Total: -118.27 kcal Atomic # 8 Polarization: -51.97 SS G_CDS: -0.09 Total: -52.06 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 1.90 Total: 40.89 kcal Total: -84.47 2.00 -82.47 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267719194.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.347 kcal (2) G-P(sol) polarization free energy of solvation -84.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds